TCONS_00017103 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017103
Unique NameTCONS_00017103
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2530

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017103 ID=TCONS_00017103|Name=TCONS_00017103|organism=Clytia hemisphaerica|type=transcript|length=2530bp
gttcaattaaaaatgatttttgattgtTCACATCCAGTAAGATTTTTTGT
GAAACCAGTTGCTTGACTATAAAATACTTTTTCCTAAaccaaaacatttt
ctttaCCCTTCttctcaaaacattttttcatttgagttaaAATAGTCTCT
AGCCTTCTATCAATTGCTAGCAAGTGATCTTTAGTCAATACGGGATAAAT
AGGGTCTGATGCTAATTTCTTTTCAAGAGTTTGGCTCAAGGAAATCTCAG
TTTGCTCGTCAGTGATGTATGAACTTATTACTAGATATGTTTGATGTCTT
AGTGTACAACATTGCATCAATGGGGCTAGGATACTAAGCTCGTCATGATT
AGGGTTCCCAAAACTTTTGCCATTATCTAAATGTATGACCATACTTGTAT
CTTTGTTTCTCGTAAATTCATAATGATGTCTATCTGCATTaccaatcaaa
aaatcaaatattgATGTGTCCATTAAGTCTAGCAATCTTGGTCCTTGATC
ATAAGGAGGCTTTGTAATAACATTATCGCAATAATTTGAATCAATCTCCC
ATTTTGCTTTTCTATTTTTACGATAGGTTCTTTGCCACGGGTGTCtcatt
ttataaagtttgacATGTTTTGGGAGCCATAGAGTGAGTGAAGCTTCCAT
TATTTCCCCTTTACCACAGGCAGATTCTTCCCTTTTGCAATACatacatt
ttccaaaaaaacaaatattgTTTGAATTGTCTCTCCAAAAAGTATCCAGC
AGTGAGGTTTGAGCAACATTTATTACTTCTTCTCTCAAATTAACTAATCT
ACCGACAACTGGAGGAGCTCTATTGAATCCTAGGATTCTATCTAAATGAA
ATGCAGCTATTTCGCCATTGTGTCTATCATAGCCTTCATATGGGGTTCCG
CCAAGAATTTTGTCTCTTGAGTAACGCTTTGGTTTAAAAACCACCTCTTG
TTTCTTAAGTGGTGGTCCATCAAGAACaaactgtgcttttaattgtgTTC
CCTTAACTCCAACTTTTGCttgtaatatttttgttttagccATTGCATTC
AGTATCATGTCTACTTGAAGATCAGAGATACTAGTTATGGCTCGAGCTTC
TGGCATTTCTTTCCAGATAATCCATGGATGTATTTTCTCCTCAGTTGCAA
CAGAATCTGTTGATCTTTTAGTGTTTTGCCaagtgttttgttttgaatta
aagTGAAGAAGACACAAGACAAAAACACTGACAACAATCAGGGAAAATCT
TTGTTTCCACTTCATtgcaaaaatgtgaaaaagaaatCCACAAACAGTCA
AACCCACCAAATGCCAAACAAAAAATGATCAGCACACATCCAAGTAGAAA
GAGTTTTTAGCATTCAGAGAGCAGCAGAGAgcgataaaatttgaaaaaaa
aaatcttacaacGTGTCGTATAATACCATAAAAGATTACAACATAGTTTT
CTACTTTNAACatacattttccaaaaaaacaaatattgTTTGAATCGTCT
CTCCAAAAAGTATCCAGCAGTGAGGTTTGAGCAACATTTATTACTTCTTC
TCTCAAATTAACTAATCTACCAACAACTGGAGGAGCTCTATTGAATCCTA
GGATTCGATCTAAATGAAATGCAGCTATTTCGCCATTGTGTCTATCATAG
CCTTCATACGGGGTTCCGTCAAGAATTTTGTCTCTTGGGTAACGCTTTGG
TTTAAAAACCACCTCTTGTTTCTTAAGTGGTGGTCCATCAAGAACaaact
gtgcttttaattgtgTTCCCTTAACTCCAACTTTTGCttgtaatattttt
gttttagccATTGCATTCAGTATCATGTCTACTTGAAGATCAGAGATACT
AGTTATGGCTCGAGCTTCTGGCATTTCTTTCCAGATAATCCATGGATGTA
TTTTCTCCTCAGTTGCAACAGAATCTGTTGATCTTTTAGTGTTTTGCCaa
gtgttttgttttgaattaaagTGAAGAAGACACAAGACAAAAACACTGAC
AACAATCAGGGAAAATCTTTGTTTCCACTTCATtgcaaaaatgtgaaaaa
gaaatCCACAAACAGTCAAACCCACCAAATGCCAAACAAAAAATGATCAG
CACACATCCAAGTAGAAAGAGTTTTTAGCATTCAGAGAGCAGCAGAGAgc
gataaaatttgaaaaaaaaaatcttacaacGTGTCGTATAATACCATAAA
AGATTACAACATAGTTTTCTACTTTTTGAATTGCACAAGCAACCCCACCA
GTCTTctatttgttgaaaaaaaacttgttaagaaagttttttaaaatctC
CATTTACTTCTTGGTTTGACAGAAAGTGAAAGTGGATTGTTACGCATGTG
GGAAATCTTGACAACTCATATTTTTGAGCTCCACCGTGGTGGCTTTCGGC
ACAAATTCATCCAATAATCTGGTTGTTCACATTTGAAATCATCTACGAAG
AAGCTTATACTTTTATTCTTTTGATTGGTTCTTGTAATTTTGTCTTGATT
AGCTCTGCTACTTGCTATAAATAGATCTAT
Run BLAST on NCBI

transcript from alignment at sc0000259:262525..265054+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017103 ID=TCONS_00017103|Name=TCONS_00017103|organism=Clytia hemisphaerica|type=transcript|length=2530bp|location=Sequence derived from alignment at sc0000259:262525..265054+ (Clytia hemisphaerica)
gttcaattaaaaatgatttttgattgtTCACATCCAGTAAGATTTTTTGT
GAAACCAGTTGCTTGACTATAAAATACTTTTTCCTAAaccaaaacatttt
ctttaCCCTTCttctcaaaacattttttcatttgagttaaAATAGTCTCT
AGCCTTCTATCAATTGCTAGCAAGTGATCTTTAGTCAATACGGGATAAAT
AGGGTCTGATGCTAATTTCTTTTCAAGAGTTTGGCTCAAGGAAATCTCAG
TTTGCTCGTCAGTGATGTATGAACTTATTACTAGATATGTTTGATGTCTT
AGTGTACAACATTGCATCAATGGGGCTAGGATACTAAGCTCGTCATGATT
AGGGTTCCCAAAACTTTTGCCATTATCTAAATGTATGACCATACTTGTAT
CTTTGTTTCTCGTAAATTCATAATGATGTCTATCTGCATTaccaatcaaa
aaatcaaatattgATGTGTCCATTAAGTCTAGCAATCTTGGTCCTTGATC
ATAAGGAGGCTTTGTAATAACATTATCGCAATAATTTGAATCAATCTCCC
ATTTTGCTTTTCTATTTTTACGATAGGTTCTTTGCCACGGGTGTCtcatt
ttataaagtttgacATGTTTTGGGAGCCATAGAGTGAGTGAAGCTTCCAT
TATTTCCCCTTTACCACAGGCAGATTCTTCCCTTTTGCAATACatacatt
ttccaaaaaaacaaatattgTTTGAATTGTCTCTCCAAAAAGTATCCAGC
AGTGAGGTTTGAGCAACATTTATTACTTCTTCTCTCAAATTAACTAATCT
ACCGACAACTGGAGGAGCTCTATTGAATCCTAGGATTCTATCTAAATGAA
ATGCAGCTATTTCGCCATTGTGTCTATCATAGCCTTCATATGGGGTTCCG
CCAAGAATTTTGTCTCTTGAGTAACGCTTTGGTTTAAAAACCACCTCTTG
TTTCTTAAGTGGTGGTCCATCAAGAACaaactgtgcttttaattgtgTTC
CCTTAACTCCAACTTTTGCttgtaatatttttgttttagccATTGCATTC
AGTATCATGTCTACTTGAAGATCAGAGATACTAGTTATGGCTCGAGCTTC
TGGCATTTCTTTCCAGATAATCCATGGATGTATTTTCTCCTCAGTTGCAA
CAGAATCTGTTGATCTTTTAGTGTTTTGCCaagtgttttgttttgaatta
aagTGAAGAAGACACAAGACAAAAACACTGACAACAATCAGGGAAAATCT
TTGTTTCCACTTCATtgcaaaaatgtgaaaaagaaatCCACAAACAGTCA
AACCCACCAAATGCCAAACAAAAAATGATCAGCACACATCCAAGTAGAAA
GAGTTTTTAGCATTCAGAGAGCAGCAGAGAgcgataaaatttgaaaaaaa
aaatcttacaacGTGTCGTATAATACCATAAAAGATTACAACATAGTTTT
CTACTTTNAACatacattttccaaaaaaacaaatattgTTTGAATCGTCT
CTCCAAAAAGTATCCAGCAGTGAGGTTTGAGCAACATTTATTACTTCTTC
TCTCAAATTAACTAATCTACCAACAACTGGAGGAGCTCTATTGAATCCTA
GGATTCGATCTAAATGAAATGCAGCTATTTCGCCATTGTGTCTATCATAG
CCTTCATACGGGGTTCCGTCAAGAATTTTGTCTCTTGGGTAACGCTTTGG
TTTAAAAACCACCTCTTGTTTCTTAAGTGGTGGTCCATCAAGAACaaact
gtgcttttaattgtgTTCCCTTAACTCCAACTTTTGCttgtaatattttt
gttttagccATTGCATTCAGTATCATGTCTACTTGAAGATCAGAGATACT
AGTTATGGCTCGAGCTTCTGGCATTTCTTTCCAGATAATCCATGGATGTA
TTTTCTCCTCAGTTGCAACAGAATCTGTTGATCTTTTAGTGTTTTGCCaa
gtgttttgttttgaattaaagTGAAGAAGACACAAGACAAAAACACTGAC
AACAATCAGGGAAAATCTTTGTTTCCACTTCATtgcaaaaatgtgaaaaa
gaaatCCACAAACAGTCAAACCCACCAAATGCCAAACAAAAAATGATCAG
CACACATCCAAGTAGAAAGAGTTTTTAGCATTCAGAGAGCAGCAGAGAgc
gataaaatttgaaaaaaaaaatcttacaacGTGTCGTATAATACCATAAA
AGATTACAACATAGTTTTCTACTTTTTGAATTGCACAAGCAACCCCACCA
GTCTTctatttgttgaaaaaaaacttgttaagaaagttttttaaaatctC
CATTTACTTCTTGGTTTGACAGAAAGTGAAAGTGGATTGTTACGCATGTG
GGAAATCTTGACAACTCATATTTTTGAGCTCCACCGTGGTGGCTTTCGGC
ACAAATTCATCCAATAATCTGGTTGTTCACATTTGAAATCATCTACGAAG
AAGCTTATACTTTTATTCTTTTGATTGGTTCTTGTAATTTTGTCTTGATT
AGCTCTGCTACTTGCTATAAATAGATCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009563XLOC_009563Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017103-exon-sc0000259-1491911889:262525..265054TCONS_00017103-exon-sc0000259-1491911889:262525..265054Clytia hemisphaericaexon
TCONS_00017103-exon-sc0000259-1510915933:262525..265054TCONS_00017103-exon-sc0000259-1510915933:262525..265054Clytia hemisphaericaexon
TCONS_00017103-exon-sc0000259-1575043694:262525..265054TCONS_00017103-exon-sc0000259-1575043694:262525..265054Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000259supercontigsc0000259:262525..265054 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.743546	0.569701	0.300672	0.117664	0.358112	0.848954	1.16079	1.02279	0.223776	0.332619	0.161424	0.530568	0.494509	0.696964	0.904735	1.42402	0.757526	0.735574	0.0564575	0.295394	0.359451	0.375702	1.21791	1.05189	0.114045	0.050891	0.582599	0.233162	1.00212	1.14112
Blast
[Close]
BLAST of TCONS_00017103 vs. Swiss-Prot (Human)
Match: XYLK (Glycosaminoglycan xylosylkinase OS=Homo sapiens GN=FAM20B PE=1 SV=1)

HSP 1 Score: 370.933 bits (951), Expect = 3.304e-119
Identity = 186/356 (52.25%), Postives = 241/356 (67.70%), Query Frame = -3 
Query:   63 PWIIWKEMPEARAITSISDLQVDMILNAMAKTKILQAKVGVKGTQLKAQFVLDGPPLKKQEVVFKPKRYSRDKILGGTPYEGYDRHNGEIAAFHLDRILGFNRAPPVVGRLVNLREEVINVAQTSLLDTFWRDNSNNICFFGKCMYCKREESACGKGEIMEASLTLWLPKHVKLYKMRHPWQRTYRKNRKAKWEIDSNYCDNVITKPPYDQGPRLLDLMDTSIFDFLIGNADRHHYE-FTRNKDTSMVIHLDNGKSFGNPNHDELSILAPLMQCCTLRHQTYLVISSYITDEQTEISLSQTLEKKLASDPIYPVLTKDHLLAIDRRLETILTQMKKCFEKKGKENVLV*EKVFYSQ 1127
            PW I  +    R +      ++  +++AMA  KI++A VG KGTQLKA  +L+G     Q+VVFKPKRYSRD ++ G PY GYDRHN E+AAFHLDRILGF+RAP VVGR VNLR E+  VA   LL TF     NN CF+GKC YC+  E AC  G+IME S+TLWLP    L K RHPW RTYR+ + A+WE D +YCD V    PYD GPRLLD++DT++FD+LIGNADRHHYE F  ++  SM+I LDN KSFGNP+ DE SILAPL QCC +R  T+  + +Y+ +      L   L+  +A DPI PVL+  HL A+D+RL ++L  +K+C ++ G + VLV +++  S 
Sbjct:   63 PWEIAAQWVVPREVYPEETPELGAVMHAMATKKIIKADVGYKGTQLKALLILEG----GQKVVFKPKRYSRDHVVEGEPYAGYDRHNAEVAAFHLDRILGFHRAPLVVGRFVNLRTEIKPVATEQLLSTFLT-VGNNTCFYGKCYYCRETEPACADGDIMEGSVTLWLPDVWPLQKHRHPWGRTYREGKLARWEYDESYCDAVKKTSPYDSGPRLLDIIDTAVFDYLIGNADRHHYESFQDDEGASMLILLDNAKSFGNPSLDERSILAPLYQCCIIRVSTWNRL-NYLKNG----VLKSALKSAMAHDPISPVLSDPHLDAVDQRLLSVLATVKQCTDQFGMDTVLVEDRMPLSH 408

HSP 2 Score: 155.221 bits (391), Expect = 1.844e-40
Identity = 78/144 (54.17%), Postives = 97/144 (67.36%), Query Frame = -3 
Query: 1464 PWIIWKEMPEARAITSISDLQVDMILNAMAKTKILQAKVGVKGTQLKAQFVLDGPPLKKQEVVFKPKRYPRDKILDGTPYEGYDRHNGEIAAFHLDRILGFNRAPPVVGRLVNLREEVINVAQTSLLDTFWRDDSNNICFFGKC 1895
            PW I  +    R +      ++  +++AMA  KI++A VG KGTQLKA  +L+G     Q+VVFKPKRY RD +++G PY GYDRHN E+AAFHLDRILGF+RAP VVGR VNLR E+  VA   LL TF     NN CF+GKC
Sbjct:   63 PWEIAAQWVVPREVYPEETPELGAVMHAMATKKIIKADVGYKGTQLKALLILEG----GQKVVFKPKRYSRDHVVEGEPYAGYDRHNAEVAAFHLDRILGFHRAPLVVGRFVNLRTEIKPVATEQLLSTFLT-VGNNTCFYGKC 201
The following BLAST results are available for this feature:
BLAST of TCONS_00017103 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XYLK3.304e-11952.25Glycosaminoglycan xylosylkinase OS=Homo sapiens GN... [more]
back to top