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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017112 ID=TCONS_00017112|Name=TCONS_00017112|organism=Clytia hemisphaerica|type=transcript|length=3586bpRun BLAST on NCBI protein sequence of TCONS_00017112-protein >TCONS_00017112-protein ID=TCONS_00017112-protein|Name=TCONS_00017112-protein|organism=Clytia hemisphaerica|type=polypeptide|length=629bp MTGYVVHNEGYQPDDDSASAAYNRSFDPEGGQSNGSVAKETKDGGEEEVRRun BLAST on NCBI transcript from alignment at sc0000259:32493..43724- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017112 ID=TCONS_00017112|Name=TCONS_00017112|organism=Clytia hemisphaerica|type=transcript|length=11232bp|location=Sequence derived from alignment at sc0000259:32493..43724- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000259:32493..43724- >TCONS_00017112 ID=TCONS_00017112|Name=TCONS_00017112|organism=Clytia hemisphaerica|type=CDS|length=17010bp|location=Sequence derived from alignment at sc0000259:32493..43724- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017112 vs. Swiss-Prot (Human)
Match: S6A20 (Sodium- and chloride-dependent transporter XTRP3 OS=Homo sapiens GN=SLC6A20 PE=1 SV=1) HSP 1 Score: 437.573 bits (1124), Expect = 8.912e-139 Identity = 261/581 (44.92%), Postives = 360/581 (61.96%), Query Frame = 2
Query: 551 EEVRQGWGNKFEFVLAIVGYAVGLGNVWRFPYLAQKNGGGAFLIPYILSLAFMGIPVFYMELAIGQRLRRGPLHVWNKLSPYXXXXXXXXXXXXXXXXCYYNMIVAWCFYYLFISFQAEVPYAKCPCEEGFSSCNETYGMVEECALSSPTTYFWYRGALDTTSGIDDSGVFNWKXXXXXXXXXXXXFGITCKGTESMGKAVYFTAIFPYVVLIIFFVRAMMLEGASDGIKHMFTPDFEALTKAEVWLDASTQIFYSLGLAFGGLISMASYNEINNNIVRDALLVSVVNCGTSIFGGVTIFGILGYKATVNYKHCLTKQPL--------------------------------------DNRTCDLKTFLDDVAQGPGLTFIAFTEAMSTMDVTQLWSVMFFXXXXXXXXXXXXXXYEAVRTTVIDLKIIP--LRKELVSLILCLVSFLFGLLFCQGSGQYWLDMFNSFAANIGLLTISLFEVIIIMYIYGIKKFEKDIEFMLGKKPNWYWKSMWLFVTPGLTV--LIIFASFYSLAANGIKYIRWDPVTATTFLDDYPNWAKGLCILLIAASVIFIPITAL 2167
E+ R W N +FV A + YAVGLGNVWRFPYL Q GGG+FL+PYI+ L G+P+ Y+ELA+GQR+R+G + W +SPYL+GVG++SVVVSF + YYN+I AW F+YLF SFQ +P++ CP N T G EEC +S T YFWYR L+ + + ++G W+ ALCLLLAW++++ +GTES GK VYFTA PY VLII+ +R + L GA++G+ +MFTP E L + W++A+TQIF+SLGL FG LI+ ASYNE +NN + A++VS++N TSIF + F I G+KAT NY++CL K L + C L++ LD QG GL FI +TEA+ M+V+QLWSV++F M L LGIG+MLG A+ T + D KII L KE +S ++CLV+ G++F +G YW D+FN +AA + LL I L E I + Y+YG+++FE D++ M G+ +WYWK MW V+P L V + + S Y L +KY WD DYP +A + LL+A+S + IP+ AL
Sbjct: 2 EKARPLWANSLQFVFACISYAVGLGNVWRFPYLCQMYGGGSFLVPYIIMLIVEGMPLLYLELAVGQRMRQGSIGAWRTISPYLSGVGVASVVVSFFLSMYYNVINAWAFWYLFHSFQDPLPWSVCPLNG-----NHT-GYDEECEKASSTQYFWYRKTLNISPSLQENGGVQWEPALCLLLAWLVVYLCILRGTESTGKVVYFTASLPYCVLIIYLIRGLTLHGATNGLMYMFTPKIEQLANPKAWINAATQIFFSLGLGFGSLIAFASYNEPSNNCQKHAIIVSLINSFTSIFASIVTFSIYGFKATFNYENCLKKVSLLLTNTFDLEDGFLTASNLEQVKGYLASAYPSKYSEMFPQIKNCSLESELDTAVQGTGLAFIVYTEAIKNMEVSQLWSVLYFFMLLMLGIGSMLGNTAAILTPLTDSKIISSHLPKEAISGLVCLVNCAIGMVFTMEAGNYWFDIFNDYAATLSLLLIVLVETIAVCYVYGLRRFESDLKAMTGRAVSWYWKVMWAGVSPLLIVSLFVFYLSDYILTGT-LKYQAWDASQGQLVTKDYPAYALAVIGLLVASSTMCIPLAAL 575 The following BLAST results are available for this feature:
BLAST of TCONS_00017112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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