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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017121 ID=TCONS_00017121|Name=TCONS_00017121|organism=Clytia hemisphaerica|type=transcript|length=1937bp
CGTTTATACAAATTAATCACTCCTTAGAAAGaactagaaaaaaaatatga
cctatagacaatagatcACCCTACGCACATCATAAAAACTTCCAACTTTA
CCTTTATGAAAACAAGAATTTAAGAAAATCGACAGCTTTGCTTTGAGAAG
attttaataacaaaaaattcatGAATAAATATCGAcgaatttaaaaatca
aattgaaacaCCAAAAAGCTtgaattatcaaaaataaataaaatgcaTAT
ATTATTCCAAAATATATAATCTTAGAAGACAAAGGCTTAAAAAAGGCAAG
tcccaaaatataaaaaacaaagcTAAATCTTTCTTCCTCACAAAATAAAA
TCGTAAACTGACTTAAAACTGGAATGATTCCATCAAAAGCTCAATTTTCG
AAACCAACCTAAGAGGAGTCATAgcttcaaatttattgagtgtTTTTTAA
TTATATAGCTGAAAATATCTAATTCAAAATCCAGACTACAGCTTGATACA
AATTTTCACCTTTGTGAGCCAGTTAGAGTTAGAGAGAATGTTAAAGAAGc
tgaattttcctaaaaatgattttaaaaatagaaCCTAACTGACttgaact
tttttaagttttcggTTTTGAATTTCAACAGCAGAAACCTTCAACGGCCA
GCCATTGCCCATAATTCCTGCTTGAGCTGCAACCCCAATACCAACAGCGA
TATCTGGGTCAATAGCAGTATTTGGTACTTTACCGAAATATTCAGCAATA
AGTTCACGAACACGTGGTATTCTTGTTGAGCCTCCAACTAGAACAATTTC
ATCTACATCTTGTCTTCTGGTTTCAGATTCTTCTAGAACAGTTTCAACAG
GCTTTAATACTTTTTCAAATAGTTCTTTATTAATCGTATTAAATTCCAAT
CTAGTCATTTCGTAGGCAAAGTCAATGGGTATATTGTCTACTTTTGATAA
GGCAttcaaaaatacatgaaataCAGCTTTATCGTTATCAGTTAAACTTT
TCTTAAGGATTTCCACATGGTCTCTAATCACTTGTAAATCGTTAGCATCA
ATCAAAACATCACCATGTTTATCTGCAATCTTTTGGCGAAAAAAATCAAT
CAAGTTGTTATTGACATCTTGTCCACCCAATCGGTTATTGCCTGCCATTG
CCATAGTAACAAACATACCACCCTGCACGTACAAGAGTGATACATCTAAC
GTACCACCACCAAAATCAATTACAATAACTACATTGGTACCTGCTTTCTT
ATGAAGACCATAAGCCAAAGCAGCTGCAGTTGGTTCATTAATAACCCTCA
CAACTTTCAATCCTGCCCTACGTCCAGCTTCAATGGTAGCGTTGCGCTGT
ATCTCATCAAAATCTGCAGGGACACTTATGACAGCCAGTTTGATCGTTCT
ATCAATCTCTGACTCAACCATACGTTTCAGCTTTCGTAGAATAATAGCAC
CAATATCTTCGGGTGAGAAAACTTTAGTTCCATTTTTCAATTTAACTTTG
AAAAGAGCATTTCCCTTCTCATCTGTGTCAACATCAAATGCATAATTTGT
AATTAAAGGATTCATTTcctcttttgtgaatgttttgccGATAAACCGTT
TTGCATCAAAAATTGTATTCATACTATTGACCTCAATTTGATCAACAGCT
TTATAACCGACAAGTGTATCATTTTCTAAAATAGCCACAACACTTGGTAT
AATATTTTTCCCATTCTCATCTTTGTAGACAGTTACATTTCCAGATTTGA
ATTCATATGTACTAACACAGGAAAATGTTGTTCCAAGATCAATACCTACA
ATGGTAGGTTTGGGTGGTGGTAATTTGCTCTGCATGAAATAGCCAGTTGC
AAAAACAGCAAATATCACAATTGCAATAGGCCCTATTGCAGAACTCATGT
TTTATTtatctataaaaaagaaaaaacagttAGAAAA Run BLAST on NCBI transcript from alignment at sc0000259:268915..270928- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017121 ID=TCONS_00017121|Name=TCONS_00017121|organism=Clytia hemisphaerica|type=transcript|length=2014bp|location=Sequence derived from alignment at sc0000259:268915..270928- (Clytia hemisphaerica)
CGTTTATACAAATTAATCACTCCTTAGAAAGAACTAGAAAAAAAATATGA
CCTATAGACAATAGATCACCCTACGCACATCATAAAAACTTCCAACTTTA
CCTTTATGAAAACAAGAATTTAAGAAAATCGACAGCTTTGCTTTGAGAAG
ATTTTAATAACAAAAAATTCATGAATAAATATCGACGAATTTAAAAATCA
AATTGAAACACCAAAAAGCTTGAATTATCAAAAATAAATAAAATGCATAT
ATTATTCCAAAATATATAATCTTAGAAGACAAAGGCTTAAAAAAGGCAAG
TCCCAAAATATAAAAAACAAAGCTAAATCTTTCTTCCTCACAAAATAAAA
TCGTAAACTGACTTAAAACTGGAATGATTCCATCAAAAGCTCAATTTTCG
AAACCAACCTAAGAGGAGTCATAGCTTCAAATTTATTGAGTGTTTTTTAA
TTATATAGCTGAAAATATCTAATTCAAAATCCAGACTACAGCTTGATACA
AATTTTCACCTTTGTGAGCCAGTTAGAGTTAGAGAGAATGTTAAAGAAGC
TGAATTTTCCTAAAAATGATTTTAAAAATAGAACCTAACTGACTTGAACT
TTTTTAAGTTTTCGGTTTTGAATTTCAACAGCAGAAACCTTCAACGGCCA
GCCATTGCCCATAATTCCTGCTTGAGCTGCAACCCCAATACCAACAGCGA
TATCTGGGTCAATAGCAGTATTTGGTACTTTACCGAAATATTCAGCAATA
AGTTCACGAACACGTGGTATTCTTGTTGAGCCTCCAACTAGAACAATTTC
ATCTACATCTTGTCTTCTGGTTTCAGATTCTTCTAGAACAGTTTCAACAG
GCTTTAATACTTTTTCAAATAGTTCTTTATTAATCGTATTAAATTCCAAT
CTAGTCATTTCGTAGGCAAAGTCAATGGGTATATTGTCTACTTTTGATAA
GGCATTCAAAAATACATGAAATACAGCTTTATCGTTATCAGTTAAACTTT
TCTTAAGGATTTCCACATGGTCTCTAATCACTTGTAAATCGTTAGCATCA
ATCAAAACATCACCATGTTTATCTGCAATCTTTTGGCGAAAAAAATCAAT
CAAGTTGTTATTGACATCTTGTCCACCCAATCGGTTATTGCCTGCCATTG
CCATAGTAACAAACATACCACCCTGCACGTACAAGAGTGATACATCTAAC
GTACCACCACCAAAATCAATTACAATAACTACGTTGGTACCTGCTTTCNC
TGCACGTACAAGAGTGATACATCTAACGTACCACCACCAAAATCAATTAC
AATAACTACATTGGTACCTGCTTTCTTATGAAGACCATAAGCCAAAGCAG
CTGCAGTTGGTTCATTAATAACCCTCACAACTTTCAATCCTGCCCTACGT
CCAGCTTCAATGGTAGCGTTGCGCTGTATCTCATCAAAATCTGCAGGGAC
ACTTATGACAGCCAGTTTGATCGTTCTATCAATCTCTGACTCAACCATAC
GTTTCAGCTTTCGTAGAATAATAGCACCAATATCTTCGGGTGAGAAAACT
TTAGTTCCATTTTTCAATTTAACTTTGAAAAGAGCATTTCCCTTCTCATC
TGTGTCAACATCAAATGCATAATTTGTAATTAAAGGATTCATTTCCTCTT
TTGTGAATGTTTTGCCGATAAACCGTTTTGCATCAAAAATTGTATTCATA
CTATTGACCTCAATTTGATCAACAGCTTTATAACCGACAAGTGTATCATT
TTCTAAAATAGCCACAACACTTGGTATAATATTTTTCCCATTCTCATCTT
TGTAGACAGTTACATTTCCAGATTTGAATTCATATGTACTAACACAGGAA
AATGTTGTTCCAAGATCAATACCTACAATGGTAGGTTTGGGTGGTGGTAA
TTTGCTCTGCATGAAATAGCCAGTTGCAAAAACAGCAAATATCACAATTG
CAATAGGCCCTATTGCAGAACTCATGTTTTATTTATCTATAAAAAAGAAA
AAACAGTTAGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017121-exon-sc0000259-1575043694:269736..270928 | TCONS_00017121-exon-sc0000259-1575043694:269736..270928 | Clytia hemisphaerica | exon |
| TCONS_00017121-exon-sc0000259-1575043694:268915..269658 | TCONS_00017121-exon-sc0000259-1575043694:268915..269658 | Clytia hemisphaerica | exon |
| TCONS_00017121-exon-sc0000259-1510915933:269736..270928 | TCONS_00017121-exon-sc0000259-1510915933:269736..270928 | Clytia hemisphaerica | exon |
| TCONS_00017121-exon-sc0000259-1510915933:268915..269658 | TCONS_00017121-exon-sc0000259-1510915933:268915..269658 | Clytia hemisphaerica | exon |
| TCONS_00017121-exon-sc0000259-1491911889:269736..270928 | TCONS_00017121-exon-sc0000259-1491911889:269736..270928 | Clytia hemisphaerica | exon |
| TCONS_00017121-exon-sc0000259-1491911889:268915..269658 | TCONS_00017121-exon-sc0000259-1491911889:268915..269658 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000259 | supercontig | sc0000259:268915..270928 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00017121 vs. Swiss-Prot (Human)
Match: HSP13 (Heat shock 70 kDa protein 13 OS=Homo sapiens GN=HSPA13 PE=1 SV=1) HSP 1 Score: 358.992 bits (920), Expect = 5.048e-116 Identity = 210/466 (45.06%), Postives = 287/466 (61.59%), Query Frame = -1
Query: 612 MSSAIGPIAIVIFAVFATGYFMQSKLPPPKPTIVGIDLGTTFSCVSTYEFKSGNVTVYKDENGKNIIPSVVAILENDTLVGYKAVDQIEVNSMNTIFDAKRFIGKTFTKEEMNPLITNYAFDVDTDEKGNALFKVKLKNGTKVFSPEDIGAIILRKLKRMVESEIDRTIKLAVISVPADFDEIQRNATIEAGRRAGLKVVRVINEPTAAALAYGLHKKAGTNVVIVIDFGGGTLDVSLLYVQGGMFVTMAMAGNNRLGGQDVNNNLIDFFRQKIADKHGDVLIDANDLQVIRDHVEILKKSLTDNDKAVFHVFL-------------------NALSKVDNIPID------------------FAYEMTRLEFNTINKELFEKVLKPVETVLEESETRRQDVDEIVLVGGSTRIPRVRELIAEYFGKVPNTAIDPDXXXXXXXXXXXXXXGNGWPLKVSAVEIQNR 1898
M+ + + + + GY Q LP P P ++GIDLGTT+ V + +G V V DENG IPS+V+ +ND VGY++V+ + N NTI+DAKRFIGK FT EE+ I Y F V ++ G F V N T SPE +G+ +L KLK M E+ + + AVISVPA+FD QRN+TIEA AGLK++RVINEPTAAA+AYGLH KA V+VID GGGTLDVSLL QGGMF+T AM+GNN+LGGQD N L+ + ++I +G V ++ +R VE++K +LT + A V L + LS D+ ++ F E++R F+T+N++LF+K+L P++ VL+E + ++DE+VLVGGSTRIPR+R++I E+FGK PNT++DPD+AV GVA QAGI G WPL+VSA+EI N+
Sbjct: 1 MAREMTILGSAVLTLLLAGYLAQQYLPLPTPKVIGIDLGTTYCSVGVFFPGTGKVKVIPDENGHISIPSMVSFTDNDVYVGYESVELADSNPQNTIYDAKRFIGKIFTAEELEAEIGRYPFKV-LNKNGMVEFSVT-SNETITVSPEYVGSRLLLKLKEMAEAYLGMPVANAVISVPAEFDLKQRNSTIEAANLAGLKILRVINEPTAAAMAYGLH-KADVFHVLVIDLGGGTLDVSLLNKQGGMFLTRAMSGNNKLGGQDFNQRLLQYLYKQIYQTYGFVPSRKEEIHRLRQAVEMVKLNLTLHQSAQLSVLLTVEEQDRKEPHSSDTELPKDKLSSADDHRVNSGFGRGLSDKKSGESQVLFETEISRKLFDTLNEDLFQKILVPIQQVLKEGHLEKTEIDEVVLVGGSTRIPRIRQVIQEFFGKDPNTSVDPDLAVVTGVAIQAGIDGGSWPLQVSALEIPNK 463
The following BLAST results are available for this feature:
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