TCONS_00017124 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017124
Unique NameTCONS_00017124
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1664

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017124 ID=TCONS_00017124|Name=TCONS_00017124|organism=Clytia hemisphaerica|type=transcript|length=1664bp
CCCCTTAGTTTTGTTATTAAGTTCACAGTTTCTGTACGCCAATAGTTATC
ACACAAATTTGAATCAATTTTCACACAGGTACTAATTCTCAAATAATATG
TCAATAACCAAATATCAAGGATGTTTGTTAGGAGCCTTGATAGGTGATTG
CATGGGGGCACCTTTTGAAATGAGCTATTTTGGTCGAAatggaataaaaa
gagaaatcaTATTGAATAAGCTGTCAAAGACCCTTGAGAAGAAAGAAAGC
ACTTTTGGATATACAGATGATAGTGCAATGACAAAATCTGTTGCTCATTC
ACTCCTAAAAAACAATGGGTTCAGTCGTACAGATATGGCAAGAAGATTTA
GAGACGACTACATCAAAGAGCCCTTTCGTGGATATGGTGGAGGTGTTGTT
AGTATTTTTCAACAATGGAATACACAAGAAATAACAGATGACAATGTTTA
TTTACCTTCTAAACACCAGTTTGATGGCTCTGGCTCATTTGGAAATGGAG
CAGCAATGAGGGTTGCACCAATACCTTTATTTGCAAAATCACCAGATCAA
TGTATTGAGATTGCACAACGGGCAGCACAGTTAACACATTATAACAAACA
TGGTATCAACGGAGCTATTCTTCAAGCACTTGCCATTTTCCACGCTCTTC
AATCAAAAAAGGATAACTTCAAAGTTGATGAATTTCTTACATACCTGAAA
AAACATATGATGACAATTGAAGAAGCTTCAAAAGTAAAAATAGGACATCA
CAAAAATGAaaatgaaaatattgaagaatATGCCAAGTCAGAAAACTTTT
CATACAGCAGTCAACTTGAAGTTATTGAAAAACTTATCtcaaatgaaaac
attgatTTAAAAACTGTTATAGAAAAAATTGGACATGATATTTCAGCCAT
GACGGCTGTACCTGCTGCAATaatatcatttttgaaaaatattgataatg
GTTTTGAAGAGGTTTTATATTATGCAATATCACTTGGAGGTGATACTGAT
ACTATTGCCAGTATGGCGTGTGCAATTGCTGGAGCTTTTTATGGTGCACA
AGATATTCCTAAACTATGGATTGAAAAATGTGAAGATTCAGATATTTTAG
TTGACATGGGTGAGAAATTGTACCAAGTACATTCTTAAATGCGATAattg
attatgaaaatgtttcataACCCATAAAATCCATAAGTATGCACGTTTAT
TAAATATCACCTTTATCTTTAAGTTATATTCCCATtatgattgaaaaaat
tgaattcaaaataGTTCTTTTTTCTAATCCTTGAAAAAACAACTTCATAA
GGTGTCCATGTGGAGTTGAAAATGTTGGCACCTGCGGCGGGTATTTTACC
AACAACAACAGTTACTCTGAAAGCCAAAACTCAATTTCCAAGTCAAAAAA
CGGCCAGTGACTAGAGTCtttggaatttttattgttgataagaaattata
tttttaaattaaattgataCTATTTAATTGGGCTCTTTATGAATTTACta
aatatagaaaatatttaTGATATTCTGAGGGTAAGGAAATTGTGCCTATA
GAATCACACAGTTTTCATACATTTTAGATTTTGTACCATAAATAGATTGT
ATTATTTTGGAAAGTCATCACAAAatagttttgtatttttattactttta
tcaCGAGTAAAATC
Run BLAST on NCBI

transcript from alignment at sc0000259:330920..334092-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017124 ID=TCONS_00017124|Name=TCONS_00017124|organism=Clytia hemisphaerica|type=transcript|length=3173bp|location=Sequence derived from alignment at sc0000259:330920..334092- (Clytia hemisphaerica)
CCCCTTAGTTTTGTTATTAAGTTCACAGTTTCTGTACGCCAATAGTTATC
ACACAAATTTGAATCAATTTTCACACAGGTACTAATTCTCAAATAATATG
TCAATAACCAAATATCAAGGATGTTTGTTAGGAGCCTTGATAGGTGATTG
CATGGGGGCACCTTTTGAAATGAGCTATTTTGGTCGAAATGGAATAAAAA
GAGAAATCATATTGAATAAGCTGTCAAAGACCCTTGAGAAGAAAGAAAGC
ACTTTTGGATATACAGGTTATCTTAAAAGTTGTTGTTTTTCCTTATTTTC
TAGGTTTTTGTATATATATACCAAGTTGTATGGATTTTTTTTATAACCAA
TTTTCAATGAAATTGCTTTTTTCTTGTTAGTATATTTATCAAATCTTTTA
AAATCTCTTGACTAAAATGTTTGTAATTCACTACTAAGCAGAATATACTA
ATAAGTTCTTATTGTTGTTTTGATTTCTAGATGATAGTGCAATGACAAAA
TCTGTTGCTCATTCACTCCTAAAAAACAATGGGTTCAGTCGTACAGATAT
GGCAAGAAGATTTAGAGACGACTACATCAAAGAGCCCTTTCGTGGATATG
GTGGAGGTGTTGTTAGTATTTTTCAACAATGGAATACACAAGAAATAACA
GATGACAATGTTTATTTACCTTCTAAACACCAGTTTGATGGCTCTGGCTC
ATTTGGAAATGGAGCAGCAATGAGGGTTGCACCAATACCTTTATTTGCAA
AATCACCAGATCAATGTATTGAGGTACTAAACGAATATGAAAGTTAATTA
CACCAGCCAGTACTAACAGAGGGGAAGAGATTAGGTTCAAATTTGGTTGG
TTAAAAATGTCTGTTGGTGCGTGACTTCACACTTCACACAACCCAAGTAA
TTTCTTATCAAATCTCAATTCATGCACCTTTTGATAAGGGTTGATAGAAT
TATCATTGGCCCAGAACGCCAAGAGGGTTTCGAATACCAATTTTTTTTAG
ATACAAATTTTTTTTTTCGATATTTAAAACTTTTTTTCATTGTCAGAAAT
GTAAAAGCCACGCCATAGGCCTTTGTCTGTACACAGACCCAGCATCTACA
GATAATTTAAAACTCATTGCTGTAAAGGGTCTGTTGTCATTGTCTTTTCT
CATTTGAGATTTTTCAAACCGACCGCTGCGATGGAGTGTTGGTAAGAAAG
GGAAGGCGATAAGAGAAGTGTTTCTGTTTATGAATCATACTTCATCGCCG
AGATCTCCGTACGGGAATTTTTTTTTCAAATAAACAATGTGCACAGAGTG
TACTACGAAGTGATAAACGTGAGATACACTCTGGTACAGAGTACATAGGC
CTATGCACAGTACATAAACATCAGAAGAAACAATAAACATCTCTCATTTC
AAAAGAATAGTATTCTTTCTTCAGATACAGGAATTTGTTGATAATTTGTG
TTTTGGTATCAATCCTTCTTTTTGTTTCACTGTCTATTTAGATTGCACAA
CGGGCAGCACAGTTAACACATTATAACAAACATGGTATCAACGGAGCTAT
TCTTCAAGCACTTGCCATTTTCCACGCTCTTCAATCAAAAAAGGATAACT
TCAAAGTTGATGAATTTCTTACATACCTGAAAAAACATATGATGACAATT
GAAGAAGCTTCAAAAGTAAAAATAGGACATCACAAAAATGAGTAAGTCAA
ATTTTTTTAATAATTTTATTGGTGATATTCCTGTTAATCTTCATTTTCTA
CTCTGGACTAGAAAAATCTGGAGCCTTCTGCCTGAGCTGAGGATATTTAA
TTAACAATTTTTGTTTTCTAAATAGTCTGTCAAAGTTTCTATATAGGCTG
TCAAAGCATTATGATGGTTTAATAAAAGATGGGCTATCGAAAATGGGCCA
TTTGATAGTCAAAAGGGATCATGGGTAATCAGGACCACCACGCCCTCATA
GGCCGCTTCCTGCTGGTCTAAAAATTCCTCATTGTCCATACACCCCTACC
TTATAGCCCTGGTGATGATCTTTTTCCCACAGTGGGAATGAAAATTGTTA
GAGAAATCCTAATGGGAAAATTCTATTGTTCCAGGGTCAAAAAATCTAGT
TGGGATGGTTTTGGAGTGCAATTTTTCCCATTGAATTTCAAATGCAAACT
CAATTTCCCAGTGGGACTGAAAGTTTGGGGTTTTTCTCCAAGCGGGACAA
AATTTTGGCAGTGGGTTGGTCACTTCAACCATGAAATCAATACTATGAAC
TTTTTATTAATTTCATAGAAATGAAAATATTGAAGAATATGCCAAGTCAG
AAAACTTTTCATACAGCAGTCAACTTGAAGTTATTGAAAAACTTATCTCA
AATGAAAACATTGATTTAAAAACTGTTATAGAAAAAATTGGACATGATAT
TTCAGCCATGACGGCTGTACCTGCTGCAATAATATCATTTTTGAAAAATA
TTGATAATGGTTTTGAAGAGGTTTTATATTATGCAATATCACTTGGAGGT
GATACTGATACTATTGCCAGTATGGCGTGTGCAATTGCTGGAGCTTTTTA
TGGTGCACAAGATATTCCTAAACTATGGATTGAAAAATGTGAAGATTCAG
ATATTTTAGTTGACATGGGTGAGAAATTGTACCAAGTACATTCTTAAATG
CGATAATTGATTATGAAAATGTTTCATAACCCATAAAATCCATAAGTATG
CACGTTTATTAAATATCACCTTTATCTTTAAGTTATATTCCCATTATGAT
TGAAAAAATTGAATTCAAAATAGTTCTTTTTTCTAATCCTTGAAAAAACA
ACTTCATAAGGTGTCCATGTGGAGTTGAAAATGTTGGCACCTGCGGCGGG
TATTTTACCAACAACAACAGTTACTCTGAAAGCCAAAACTCAATTTCCAA
GTCAAAAAACGGCCAGTGACTAGAGTCTTTGGAATTTTTATTGTTGATAA
GAAATTATATTTTTAAATTAAATTGATACTATTTAATTGGGCTCTTTATG
AATTTACTAAATATAGAAAATATTTATGATATTCTGAGGGTAAGGAAATT
GTGCCTATAGAATCACACAGTTTTCATACATTTTAGATTTTGTACCATAA
ATAGATTGTATTATTTTGGAAAGTCATCACAAAATAGTTTTGTATTTTTA
TTACTTTTATCACGAGTAAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009577XLOC_009577Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017124-exon-sc0000259-1575043694:333827..334092TCONS_00017124-exon-sc0000259-1575043694:333827..334092Clytia hemisphaericaexon
TCONS_00017124-exon-sc0000259-1575043694:333320..333612TCONS_00017124-exon-sc0000259-1575043694:333320..333612Clytia hemisphaericaexon
TCONS_00017124-exon-sc0000259-1575043694:332402..332601TCONS_00017124-exon-sc0000259-1575043694:332402..332601Clytia hemisphaericaexon
TCONS_00017124-exon-sc0000259-1575043694:330920..331824TCONS_00017124-exon-sc0000259-1575043694:330920..331824Clytia hemisphaericaexon
TCONS_00017124-exon-sc0000259-1510915933:333827..334092TCONS_00017124-exon-sc0000259-1510915933:333827..334092Clytia hemisphaericaexon
TCONS_00017124-exon-sc0000259-1510915933:333320..333612TCONS_00017124-exon-sc0000259-1510915933:333320..333612Clytia hemisphaericaexon
TCONS_00017124-exon-sc0000259-1510915933:332402..332601TCONS_00017124-exon-sc0000259-1510915933:332402..332601Clytia hemisphaericaexon
TCONS_00017124-exon-sc0000259-1510915933:330920..331824TCONS_00017124-exon-sc0000259-1510915933:330920..331824Clytia hemisphaericaexon
TCONS_00017124-exon-sc0000259-1491911889:333827..334092TCONS_00017124-exon-sc0000259-1491911889:333827..334092Clytia hemisphaericaexon
TCONS_00017124-exon-sc0000259-1491911889:333320..333612TCONS_00017124-exon-sc0000259-1491911889:333320..333612Clytia hemisphaericaexon
TCONS_00017124-exon-sc0000259-1491911889:332402..332601TCONS_00017124-exon-sc0000259-1491911889:332402..332601Clytia hemisphaericaexon
TCONS_00017124-exon-sc0000259-1491911889:330920..331824TCONS_00017124-exon-sc0000259-1491911889:330920..331824Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000259supercontigsc0000259:330920..334092 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.2536	12.9494	7.07721	10.4741	9.34137	4.25226	7.09563	7.63303	4.52665	5.14886	2.91174	2.48174	2.60518	2.85636	7.49529	7.53777	8.81399	8.04539	3.44957	4.45055	6.23714	6.32202	16.84	15.6217	2.69187	3.42537	7.97623	5.72773	15.7263	14.8717
Blast
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BLAST of TCONS_00017124 vs. Swiss-Prot (Human)
Match: ARHL2 (Poly(ADP-ribose) glycohydrolase ARH3 OS=Homo sapiens GN=ADPRHL2 PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 6.044e-69
Identity = 136/362 (37.57%), Postives = 208/362 (57.46%), Query Frame = 2 
Query:  101 SITKYQGCLLGALIGDCMGAPFEMSYFGRNGIKREIILNKLSKTLEKKESTFG--------YTDDSAMTKSVAHSLLKNNGFSRTDMARRFRDDYIKEPFRGYGGGVVSIFQQWNTQEITDDNVYLPSKHQFDGSGSFGNGAAMRVAPIPLFAKSPDQCIEIAQRAAQLTHYNKHGINGAILQALAIFHALQSKKDNFKVDEFLTYLKKHMMTIEEASKVKIGHHKNENENIEEYAKSENFSYSSQLEVIEKLISNENIDLKTVIEKIGHDISAMTAVPAAIISFLKNID---------NGFEEVLYYAISLGGDTDTIASMACAIAGAFYGAQDIPKLWIEKC---EDSDILVDMGEKLYQ 1126
            S+++++GCL GAL+GDC+G+ +E      + +    +L  + ++LE    T G        YTDD+AM +++  SLL    F   DMA RF  +Y K+P RGYG GVV++F++    +  D  V+ P++ QF+G GS+GNG AMRVA I L   S     + A+ +AQLTH +  G NGAILQALA+  ALQ +  +   + FL  L  HM  +E  ++  +        +  E    E   YSS+L+ I +L+   ++  + V+ ++G+ I+A  +VP AI  FL+ ++         N  +  L Y+ISLGGDTDTIA+MA AIAGA+YG   +P+ W + C   E++DIL     +++Q
Sbjct:   19 SLSRFRGCLAGALLGDCVGSFYE----AHDTVDLTSVLRHV-QSLEPDPGTPGSERTEALYYTDDTAMARALVQSLLAKEAFDEVDMAHRFAQEYKKDPDRGYGAGVVTVFKKLLNPKCRD--VFEPARAQFNGKGSYGNGGAMRVAGISLAYSSVQDVQKFARLSAQLTHASSLGYNGAILQALAVHLALQGESSS---EHFLKQLLGHMEDLEGDAQSVL--------DARELGMEER-PYSSRLKKIGELLDQASVTREEVVSELGNGIAAFESVPTAIYCFLRCMEPDPEIPSAFNSLQRTLIYSISLGGDTDTIATMAGAIAGAYYGMDQVPESWQQSCEGYEETDILAQSLHRVFQ 361
The following BLAST results are available for this feature:
BLAST of TCONS_00017124 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARHL26.044e-6937.57Poly(ADP-ribose) glycohydrolase ARH3 OS=Homo sapie... [more]
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