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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017134 ID=TCONS_00017134|Name=TCONS_00017134|organism=Clytia hemisphaerica|type=transcript|length=949bp
NNGCTTGCTATCTCTTGTTGCTTTCCTTTgacttttcttttgaattccCA
GAAACTCTCCTCCTTCATCCCACCTCCATTCTTTCTCAACTCTTCAATTG
TCTTTTGAATCTTCCTTGCATACCTGTGTTGTCTTTCGTGAATTATATGT
CTGTTAAGTAGCTTTCGCCTGCTTCTGTTTATTTTGGATGGtttcaattt
ctttattttctgcTTTGCCCTCATTAGTACTCTCACTCTATTACTTTGct
ccttctttttcttcaccTTGGTTTTGCATAGATTCATGATGTTATTGACC
TTTGCTTCCCATCTGTTGTATCTGTCTTGAAATGCTTCTTTTTCTTGGAG
TATCCTTGAGATTTGCTGACCTTTCAAGATTTCTCTGAACTTCGACATTC
CCTTTTTTCCAATCACCTCCTTTATTTCATTACTTCTCTCAATATTAATG
CTCCACTTGATTGTACTTATTATGGCATTGTGGTCTGTATATTGTTCTTT
AATTTCTTCATTGTCCTCTTTTATCACATGATAGGGGGTGAACCGTCTTT
CTTCGTCTATTAGCATTTGGATTACACTATCCTTCTCCGTTTTTTCTATT
ATCATGTAGTCGAGAACTGATTTCTTGTCTTTTTCCACTCTTGTCCATTT
GCCTTCAGTAACCTCCAAGTCATTGACTATCACACAATCTCTCTCCCTTG
TCATCCGTTCCAGCTCTTTTCCTCCTTTGTCAGGTCCTCCTGCAGAttta
gtttttgagttgaaGTCCCCTACAACAAGTACCTTATGTCCTTCTTCCTG
TCCTTTCAGAATTTCTTGCTCGACCCCTTGATAGATTTCTCTGATCTCCT
TCACTTTTGCTTTTTCTCCTTTTGGCGCATATATTACTCCAAGTCTGTAC
TTGGTTGTTGTTCCAATCTGCACCCACATGGATTCCATATTTTCTGTNN Run BLAST on NCBI protein sequence of TCONS_00017134-protein >TCONS_00017134-protein ID=TCONS_00017134-protein|Name=TCONS_00017134-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
TENMESMWVQIGTTTKYRLGVIYAPKGEKAKVKEIREIYQGVEQEILKGQ
EEGHKVLVVGDFNSKTKSAGGPDKGGKELERMTRERDCVIVNDLEVTEGK
WTRVEKDKKSVLDYMIIEKTEKDSVIQMLIDEERRFTPYHVIKEDNEEIK
EQYTDHNAIISTIKWSINIERSNEIKEVIGKKGMSKFREILKGQQISRIL
QEKEAFQDRYNRWEAKVNNIMNLCKTKVKKKKEQSNRVRVLMRAKQKIKK
LKPSKINRSRRKLLNRHIIHERQHRYARKIQKTIEELRKNGGGMKEESFW
EFKRKVKGKQQEIAS Run BLAST on NCBI transcript from alignment at sc0000259:113370..114318 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017134 ID=TCONS_00017134|Name=TCONS_00017134|organism=Clytia hemisphaerica|type=transcript|length=949bp|location=Sequence derived from alignment at sc0000259:113370..114318 (Clytia hemisphaerica)
NNACAGAAAATATGGAATCCATGTGGGTGCAGATTGGAACAACAACCAAG
TACAGACTTGGAGTAATATATGCGCCAAAAGGAGAAAAAGCAAAAGTGAA
GGAGATCAGAGAAATCTATCAAGGGGTCGAGCAAGAAATTCTGAAAGGAC
AGGAAGAAGGACATAAGGTACTTGTTGTAGGGGACttcaactcaaaaact
aaaTCTGCAGGAGGACCTGACAAAGGAGGAAAAGAGCTGGAACGGATGAC
AAGGGAGAGAGATTGTGTGATAGTCAATGACTTGGAGGTTACTGAAGGCA
AATGGACAAGAGTGGAAAAAGACAAGAAATCAGTTCTCGACTACATGATA
ATAGAAAAAACGGAGAAGGATAGTGTAATCCAAATGCTAATAGACGAAGA
AAGACGGTTCACCCCCTATCATGTGATAAAAGAGGACAATGAAGAAATTA
AAGAACAATATACAGACCACAATGCCATAATAAGTACAATCAAGTGGAGC
ATTAATATTGAGAGAAGTAATGAAATAAAGGAGGTGATTGGAAAAAAGGG
AATGTCGAAGTTCAGAGAAATCTTGAAAGGTCAGCAAATCTCAAGGATAC
TCCAAGAAAAAGAAGCATTTCAAGACAGATACAACAGATGGGAAGCAAAG
GTCAATAACATCATGAATCTATGCAAAACCAAggtgaagaaaaagaagga
gCAAAGTAATAGAGTGAGAGTACTAATGAGGGCAAAgcagaaaataaaga
aattgaaaCCATCCAAAATAAACAGAAGCAGGCGAAAGCTACTTAACAGA
CATATAATTCACGAAAGACAACACAGGTATGCAAGGAAGATTCAAAAGAC
AATTGAAGAGTTGAGAAAGAATGGAGGTGGGATGAAGGAGGAGAGTTTCT
GggaattcaaaagaaaagtcAAAGGAAAGCAACAAGAGATAGCAAGCNN Coding sequence (CDS) from alignment at sc0000259:113370..114318 >TCONS_00017134 ID=TCONS_00017134|Name=TCONS_00017134|organism=Clytia hemisphaerica|type=CDS|length=945bp|location=Sequence derived from alignment at sc0000259:113370..114318 (Clytia hemisphaerica)
ACAGAAAATATGGAATCCATGTGGGTGCAGATTGGAACAACAACCAAGTA
CAGACTTGGAGTAATATATGCGCCAAAAGGAGAAAAAGCAAAAGTGAAGG
AGATCAGAGAAATCTATCAAGGGGTCGAGCAAGAAATTCTGAAAGGACAG
GAAGAAGGACATAAGGTACTTGTTGTAGGGGACttcaactcaaaaactaa
aTCTGCAGGAGGACCTGACAAAGGAGGAAAAGAGCTGGAACGGATGACAA
GGGAGAGAGATTGTGTGATAGTCAATGACTTGGAGGTTACTGAAGGCAAA
TGGACAAGAGTGGAAAAAGACAAGAAATCAGTTCTCGACTACATGATAAT
AGAAAAAACGGAGAAGGATAGTGTAATCCAAATGCTAATAGACGAAGAAA
GACGGTTCACCCCCTATCATGTGATAAAAGAGGACAATGAAGAAATTAAA
GAACAATATACAGACCACAATGCCATAATAAGTACAATCAAGTGGAGCAT
TAATATTGAGAGAAGTAATGAAATAAAGGAGGTGATTGGAAAAAAGGGAA
TGTCGAAGTTCAGAGAAATCTTGAAAGGTCAGCAAATCTCAAGGATACTC
CAAGAAAAAGAAGCATTTCAAGACAGATACAACAGATGGGAAGCAAAGGT
CAATAACATCATGAATCTATGCAAAACCAAggtgaagaaaaagaaggagC
AAAGTAATAGAGTGAGAGTACTAATGAGGGCAAAgcagaaaataaagaaa
ttgaaaCCATCCAAAATAAACAGAAGCAGGCGAAAGCTACTTAACAGACA
TATAATTCACGAAAGACAACACAGGTATGCAAGGAAGATTCAAAAGACAA
TTGAAGAGTTGAGAAAGAATGGAGGTGGGATGAAGGAGGAGAGTTTCTGg
gaattcaaaagaaaagtcAAAGGAAAGCAACAAGAGATAGCAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017134-exon-sc0000259-1491911889:113370..114318 | TCONS_00017134-exon-sc0000259-1491911889:113370..114318 | Clytia hemisphaerica | exon |
| TCONS_00017134-exon-sc0000259-1510915933:113370..114318 | TCONS_00017134-exon-sc0000259-1510915933:113370..114318 | Clytia hemisphaerica | exon |
| TCONS_00017134-exon-sc0000259-1575043694:113370..114318 | TCONS_00017134-exon-sc0000259-1575043694:113370..114318 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000259 | supercontig | sc0000259:113370..114318 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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