TCONS_00017142 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017142
Unique NameTCONS_00017142
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1825

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017142 ID=TCONS_00017142|Name=TCONS_00017142|organism=Clytia hemisphaerica|type=transcript|length=1825bp
ATAACATTTTGattcttcaaaacaaagaaaattataaaaaatatttacag
gtttgaattttacaaaaaagataATTTGTAGAGGGGTAATATCATTCCAC
CACTCGTCCATTCGTTCATTCATTTGTTCATTCATTCATCTATTCAGTCA
TTCGttcatttcattcattcattcattcattcattcattcattctgcCTC
ATCACCACCAATACCACTTTCATCCGATACCATTCTTTTGGTAAAGTATT
GTTTTATCACTACAATGGATGTGGCGAAAATGATAATTGTACCTCCAGTT
AGATTCCAAAGGTTGGGACTGATATTGAAAATCACATACTGCAATAAAAA
TGCATACACAACATCCAGATTACGAATCAAATTCACTATTGTTGCATTTT
CCAAACTCAATGCTAAAGTTAACAGAACTAATGCAACAATACTGTAGACT
CCAATAGATGAACAGATGAAAAAGTCGTTAGCATTCCTTGGTATAAAAAC
TGGTTCACCAAAAATGAGTATTAGTAGAACAGTCGTTATTGCTCCCAACA
AGCTAGGATAGAAAATAGTCATTATAGCTGATAGACCATTGACCTTGATT
AATTTACGGACCAGAACAAAGTATAGCGCTAGAAATATAGCACCAAAGGC
TGCATACGCGATCCCCATTAGATAGACTGTCTCATTATCTCTGAGAGTAA
ATTTAGGGTCTGATAATGTGATACGGTAATCTCTGTACTTGCCGAATATA
AATGAAGGTCTTGCTACGACTATTACACCAATGAACGAACAGATCCCAGC
TAAACAATTGATCCAGTGTAAAGACTCTTTTAAGAATAGCCTTGAGAATA
AGTCACAAAAGAAGGGGCTTGTGAACGTCACCAGGAGAGTGTCTGAGATT
GGGATTTTCTCCAGCGAACAGTATATCAATATAATATTAGTGAAACCAGC
CACACCCATAATCAAACAATAAGGTATATCACTGAGATGCTTATAAAGTT
CAATTTTCATAATGTATATGAAGGGGGtcacaaaacaaagttgaacaAAA
CATCTAATAAAGACTAATTCGTATGTTGAAATAGTTACATTGTCTTTAGA
TGTTTGGGAGATCTCCACGTGAGCCACTTGTACCATAAAATTACTCATTG
TAAAAGCAAGTCCAGAAAAAGCTGATAGTAAAATACCGATAAGTCGATAT
TGTGACATTCTCTTTTGCAGCCGTTTTAGTTTTGAAGAGAAACATTGTGA
TTCTTGGCAACTACGTTGCGTTGTACATCCAGAACTGTTTTCACTGCTTT
CAAAATCGTTATTTGTTTGATATTTCATCTCGTTGATTGACTTGTTTCGT
TAATGTCAAGCTGGCAAATACATCAAAGTCTCTTTTGAGGAAtgcttttt
tattcaaattgtcTTTAGTTCAATTCCTGAGCTTTTTTGTCGTGTCAGCG
TATAATATCTCTGGTAGTTTGTAATACAAAGCAAGCTATGTCCGATTCAA
ATCTAATTGAGATGGATCAATGATGTGACTTTTGCCCCTTTACCACCGCC
ATTATGACGTAACTTTCCGATTGATTTGCTTTTCTTCAATGGTTTCTTAT
GATCAGCATACGAAAGATTTTTGAagtaatatttttctttccccAAACCA
ACATCCAACAGTGTTCTTGAATGGTTTTACTgaaagagaaagaagaagaa
gaaatcatTAGAGAATAGTTCCTGGTCTTATTAATCAATCAACTCAAAGt
ggttcaaaaatttcaaagatagACCAACATTTTGGAATAAAAGGCATCCT
GCGACAAAATCTTTCCCTAAaaaca
Run BLAST on NCBI

protein sequence of TCONS_00017142-protein

>TCONS_00017142-protein ID=TCONS_00017142-protein|Name=TCONS_00017142-protein|organism=Clytia hemisphaerica|type=polypeptide|length=379bp
MKYQTNNDFESSENSSGCTTQRSCQESQCFSSKLKRLQKRMSQYRLIGIL
LSAFSGLAFTMSNFMVQVAHVEISQTSKDNVTISTYELVFIRCFVQLCFV
TPFIYIMKIELYKHLSDIPYCLIMGVAGFTNIILIYCSLEKIPISDTLLV
TFTSPFFCDLFSRLFLKESLHWINCLAGICSFIGVIVVARPSFIFGKYRD
YRITLSDPKFTLRDNETVYLMGIAYAAFGAIFLALYFVLVRKLIKVNGLS
AIMTIFYPSLLGAITTVLLILIFGEPVFIPRNANDFFICSSIGVYSIVAL
VLLTLALSLENATIVNLIRNLDVVYAFLLQYVIFNISPNLWNLTGGTIII
FATSIVVIKQYFTKRMVSDESGIGGDEAE
Run BLAST on NCBI

transcript from alignment at sc0000259:362915..364739

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017142 ID=TCONS_00017142|Name=TCONS_00017142|organism=Clytia hemisphaerica|type=transcript|length=1825bp|location=Sequence derived from alignment at sc0000259:362915..364739 (Clytia hemisphaerica)
tgtttTTAGGGAAAGATTTTGTCGCAGGATGCCTTTTATTCCAAAATGTT
GGTctatctttgaaatttttgaaccaCTTTGAGTTGATTGATTAATAAGA
CCAGGAACTATTCTCTAatgatttcttcttcttctttctctttcAGTAAA
ACCATTCAAGAACACTGTTGGATGTTGGTTTggggaaagaaaaatattac
tTCAAAAATCTTTCGTATGCTGATCATAAGAAACCATTGAAGAAAAGCAA
ATCAATCGGAAAGTTACGTCATAATGGCGGTGGTAAAGGGGCAAAAGTCA
CATCATTGATCCATCTCAATTAGATTTGAATCGGACATAGCTTGCTTTGT
ATTACAAACTACCAGAGATATTATACGCTGACACGACAAAAAAGCTCAGG
AATTGAACTAAAgacaatttgaataaaaaagcaTTCCTCAAAAGAGACTT
TGATGTATTTGCCAGCTTGACATTAACGAAACAAGTCAATCAACGAGATG
AAATATCAAACAAATAACGATTTTGAAAGCAGTGAAAACAGTTCTGGATG
TACAACGCAACGTAGTTGCCAAGAATCACAATGTTTCTCTTCAAAACTAA
AACGGCTGCAAAAGAGAATGTCACAATATCGACTTATCGGTATTTTACTA
TCAGCTTTTTCTGGACTTGCTTTTACAATGAGTAATTTTATGGTACAAGT
GGCTCACGTGGAGATCTCCCAAACATCTAAAGACAATGTAACTATTTCAA
CATACGAATTAGTCTTTATTAGATGTTTtgttcaactttgttttgtgaCC
CCCTTCATATACATTATGAAAATTGAACTTTATAAGCATCTCAGTGATAT
ACCTTATTGTTTGATTATGGGTGTGGCTGGTTTCACTAATATTATATTGA
TATACTGTTCGCTGGAGAAAATCCCAATCTCAGACACTCTCCTGGTGACG
TTCACAAGCCCCTTCTTTTGTGACTTATTCTCAAGGCTATTCTTAAAAGA
GTCTTTACACTGGATCAATTGTTTAGCTGGGATCTGTTCGTTCATTGGTG
TAATAGTCGTAGCAAGACCTTCATTTATATTCGGCAAGTACAGAGATTAC
CGTATCACATTATCAGACCCTAAATTTACTCTCAGAGATAATGAGACAGT
CTATCTAATGGGGATCGCGTATGCAGCCTTTGGTGCTATATTTCTAGCGC
TATACTTTGTTCTGGTCCGTAAATTAATCAAGGTCAATGGTCTATCAGCT
ATAATGACTATTTTCTATCCTAGCTTGTTGGGAGCAATAACGACTGTTCT
ACTAATACTCATTTTTGGTGAACCAGTTTTTATACCAAGGAATGCTAACG
ACTTTTTCATCTGTTCATCTATTGGAGTCTACAGTATTGTTGCATTAGTT
CTGTTAACTTTAGCATTGAGTTTGGAAAATGCAACAATAGTGAATTTGAT
TCGTAATCTGGATGTTGTGTATGCATTTTTATTGCAGTATGTGATTTTCA
ATATCAGTCCCAACCTTTGGAATCTAACTGGAGGTACAATTATCATTTTC
GCCACATCCATTGTAGTGATAAAACAATACTTTACCAAAAGAATGGTATC
GGATGAAAGTGGTATTGGTGGTGATGAGgcagaatgaatgaatgaatgaa
tgaatgaatgaatgaaatgaaCGAATGACTGAATAGATGAATGAATGAAC
AAATGAATGAACGAATGGACGAGTGGTGGAATGATATTACCCCTCTACAA
ATtatcttttttgtaaaattcaaacctgtaaatattttttataattttct
ttgttttgaagaatCAAAATGTTAT

Coding sequence (CDS) from alignment at sc0000259:362915..364739

>TCONS_00017142 ID=TCONS_00017142|Name=TCONS_00017142|organism=Clytia hemisphaerica|type=CDS|length=1140bp|location=Sequence derived from alignment at sc0000259:362915..364739 (Clytia hemisphaerica)
ATGAAATATCAAACAAATAACGATTTTGAAAGCAGTGAAAACAGTTCTGG
ATGTACAACGCAACGTAGTTGCCAAGAATCACAATGTTTCTCTTCAAAAC
TAAAACGGCTGCAAAAGAGAATGTCACAATATCGACTTATCGGTATTTTA
CTATCAGCTTTTTCTGGACTTGCTTTTACAATGAGTAATTTTATGGTACA
AGTGGCTCACGTGGAGATCTCCCAAACATCTAAAGACAATGTAACTATTT
CAACATACGAATTAGTCTTTATTAGATGTTTtgttcaactttgttttgtg
aCCCCCTTCATATACATTATGAAAATTGAACTTTATAAGCATCTCAGTGA
TATACCTTATTGTTTGATTATGGGTGTGGCTGGTTTCACTAATATTATAT
TGATATACTGTTCGCTGGAGAAAATCCCAATCTCAGACACTCTCCTGGTG
ACGTTCACAAGCCCCTTCTTTTGTGACTTATTCTCAAGGCTATTCTTAAA
AGAGTCTTTACACTGGATCAATTGTTTAGCTGGGATCTGTTCGTTCATTG
GTGTAATAGTCGTAGCAAGACCTTCATTTATATTCGGCAAGTACAGAGAT
TACCGTATCACATTATCAGACCCTAAATTTACTCTCAGAGATAATGAGAC
AGTCTATCTAATGGGGATCGCGTATGCAGCCTTTGGTGCTATATTTCTAG
CGCTATACTTTGTTCTGGTCCGTAAATTAATCAAGGTCAATGGTCTATCA
GCTATAATGACTATTTTCTATCCTAGCTTGTTGGGAGCAATAACGACTGT
TCTACTAATACTCATTTTTGGTGAACCAGTTTTTATACCAAGGAATGCTA
ACGACTTTTTCATCTGTTCATCTATTGGAGTCTACAGTATTGTTGCATTA
GTTCTGTTAACTTTAGCATTGAGTTTGGAAAATGCAACAATAGTGAATTT
GATTCGTAATCTGGATGTTGTGTATGCATTTTTATTGCAGTATGTGATTT
TCAATATCAGTCCCAACCTTTGGAATCTAACTGGAGGTACAATTATCATT
TTCGCCACATCCATTGTAGTGATAAAACAATACTTTACCAAAAGAATGGT
ATCGGATGAAAGTGGTATTGGTGGTGATGAGgcagaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009593XLOC_009593Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017142-proteinTCONS_00017142-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017142-exon-sc0000259-1491911889:362915..364739TCONS_00017142-exon-sc0000259-1491911889:362915..364739Clytia hemisphaericaexon
TCONS_00017142-exon-sc0000259-1510915933:362915..364739TCONS_00017142-exon-sc0000259-1510915933:362915..364739Clytia hemisphaericaexon
TCONS_00017142-exon-sc0000259-1575043694:362915..364739TCONS_00017142-exon-sc0000259-1575043694:362915..364739Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000259supercontigsc0000259:362915..364739 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0233322	0.0229106	0.0282125	0.0550636	1.11496	0.891747	3.56515	2.99901	0.89011	0.370931	1.83249	1.56946	1.65816	0.963189	1.76514	2.6447	1.6744	2.07836	0.434131	0.17518	0.839166	0.774877	0.89788	0.863865	0.960029	0.93333	0.199533	0.165906	0.0270051	0.0278265
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000620EamA_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
Blast
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BLAST of TCONS_00017142 vs. Swiss-Prot (Human)
Match: S35G1 (Solute carrier family 35 member G1 OS=Homo sapiens GN=SLC35G1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.652e-19
Identity = 83/339 (24.48%), Postives = 162/339 (47.79%), Query Frame = -3 
Query:  243 CQESQCFSSKLKRLQKRMSQYRLIGILLSAFSGLAFTMSNFMVQVAHVEISQTSKDNVTISTYELVFIRCFVQLCFVTPFIYIMKIELYKHLSDIPYCLIMGVAGFTNIILIYCSLEKIPISDTLLVTFTSPFFCDLFSRLFLKESLHWINCLAGICSFIGVIVVARPSFIFGKYRDYRITLSDPKFTLRDNETVYLMGIAYAAFGAIFLALYFVLVRKLIKVNGLSAIMTIFYPSLLGAITTVLLILIFGEPVFIPRNANDFFICSSIGVYSIXXXXXXXXXXXLENATIVNLIRNLDVVYAFLLQYVIFNISPNLWNLTGGTIIIFATSIVVIKQYF 1259
            C  S C  S+ +   K+ +    +G+  +  S   F++ +  V+               +   E+   RC  Q+  V P +   K           + ++ GV G T ++LIY + + + ++D  ++TF+SP F  +F+ + LKE     + L  + +  GVI++ RP F+FG         SD    + ++ + +L G   A   A+F A   V++RK+ K   +   ++I+Y  +LG + +V+++ + GE   +P    D      IG++ +   + +T AL +E A  V +++ +DVV+AF+ Q + FN  P  W + G   ++ +     I++++
Sbjct:   48 CLSSPC-CSRTEPEAKKKAPCPGLGLFYTLLSAFLFSVGSLFVKKVQ-----------DVHAVEISAFRCVFQMLVVIPCLIYRKTGFIGPKGQRIFLILRGVLGSTAMMLIYYAYQTMSLADATVITFSSPVFTSIFAWICLKEKYSPWDALFTVFTITGVILIVRPPFLFG---------SDTS-GMEESYSGHLKGTFAAIGSAVFAASTLVILRKMGK--SVDYFLSIWYYVVLGLVESVIILSVLGE-WSLPYCGLDRLFLIFIGLFGLGGQIFITKALQIEKAGPVAIMKTMDVVFAFIFQIIFFNNVPTWWTVGGALCVVASNVGAAIRKWY 361
The following BLAST results are available for this feature:
BLAST of TCONS_00017142 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S35G13.652e-1924.48Solute carrier family 35 member G1 OS=Homo sapiens... [more]
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