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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017158 ID=TCONS_00017158|Name=TCONS_00017158|organism=Clytia hemisphaerica|type=transcript|length=2294bpRun BLAST on NCBI protein sequence of TCONS_00017158-protein >TCONS_00017158-protein ID=TCONS_00017158-protein|Name=TCONS_00017158-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp MDGGLASRLKQFDAYPKTLEDFRVKTFGGAVVTGVSSLIMFILFVSELNYRun BLAST on NCBI transcript from alignment at sc0000260:320223..331845+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017158 ID=TCONS_00017158|Name=TCONS_00017158|organism=Clytia hemisphaerica|type=transcript|length=11623bp|location=Sequence derived from alignment at sc0000260:320223..331845+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000260:320223..331845+ >TCONS_00017158 ID=TCONS_00017158|Name=TCONS_00017158|organism=Clytia hemisphaerica|type=CDS|length=21870bp|location=Sequence derived from alignment at sc0000260:320223..331845+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00017158 vs. Swiss-Prot (Human)
Match: ERGI3 (Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Homo sapiens GN=ERGIC3 PE=1 SV=1) HSP 1 Score: 491.5 bits (1264), Expect = 3.251e-167 Identity = 242/398 (60.80%), Postives = 304/398 (76.38%), Query Frame = 3
Query: 78 RLKQFDAYPKTLEDFRVKTFGGAVVTGVSSLIMFILFVSELNYYLTTEVHPELFVDTTRHQKLRINVDIFFPKIGCAYLSVDAMDVSGEQQSDLDHDIFKKRYDKDGNPVE-EAKKEELGDKSDEAMKALNGTATTQDPNRCESCYGAESSEIRCCNTCEDVRKAYRVKGWALNDIDGIEQCKREHWKDAVKEQDGEGCQVYGYVEVSKVAGNFHIAPGKSFQANHVHVQLIKIGKDGKISMNMHDLQQYGAKQFNISHQIRSLSFGVPIPNVQNPLDGTNITAETGSEMYQYFVKIVPTVYKKLSGEMVWSNQYSFTKHRRRVRQMTGESGLPGFFVLYELSPMLVQYTEKRRSFMHFLTGVCAIIGGIFTVAGLIDSMIYHSAKALKKKIELGKAT 1268
+LKQFDAYPKTLEDFRVKT GGA VT VS L+M +LF+SEL YYLTTEVHPEL+VD +R KL+IN+D+ FP + CAYLS+DAMDV+GEQQ D++H++FK+R DKDG PV EA++ ELG ++ + DP+RCESCYGAE+ +I+CCNTCEDVR+AYR +GWA + D IEQC+RE + ++EQ EGCQVYG++EV+KVAGNFH APGKSFQ +HVHV HDLQ +G N++H I+ LSFG P + NPLD TN+TA S M+QYFVK+VPTVY K+ GE++ +NQ+S T+H + + G+ GLPG FVLYELSPM+V+ TEK RSF HFLTGVCAIIGG+FTVAGLIDS+IYHSA+A++KKI+LGK T
Sbjct: 6 KLKQFDAYPKTLEDFRVKTCGGATVTIVSGLLMLLLFLSELQYYLTTEVHPELYVDKSRGDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKQRLDKDGIPVSSEAERHELG-----KVEVTVFDPDSLDPDRCESCYGAEAEDIKCCNTCEDVREAYRRRGWAFKNPDTIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHV---------------HDLQSFGLDNINMTHYIQHLSFGEDYPGIVNPLDHTNVTAPQASMMFQYFVKVVPTVYMKVDGEVLRTNQFSVTRHEKVANGLLGDQGLPGVFVLYELSPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGKTT 383 The following BLAST results are available for this feature:
BLAST of TCONS_00017158 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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