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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017162 ID=TCONS_00017162|Name=TCONS_00017162|organism=Clytia hemisphaerica|type=transcript|length=3730bpRun BLAST on NCBI protein sequence of TCONS_00017162-protein >TCONS_00017162-protein ID=TCONS_00017162-protein|Name=TCONS_00017162-protein|organism=Clytia hemisphaerica|type=polypeptide|length=425bp MSNENIRITEQHATIPDMTSSAEEHELRIRVTTSGEQSSIDLPSYDSSRIRun BLAST on NCBI transcript from alignment at sc0000260:340410..379638+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017162 ID=TCONS_00017162|Name=TCONS_00017162|organism=Clytia hemisphaerica|type=transcript|length=39229bp|location=Sequence derived from alignment at sc0000260:340410..379638+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000260:340410..379638+ >TCONS_00017162 ID=TCONS_00017162|Name=TCONS_00017162|organism=Clytia hemisphaerica|type=CDS|length=2556bp|location=Sequence derived from alignment at sc0000260:340410..379638+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00017162 vs. Swiss-Prot (Human)
Match: VTI1A (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens GN=VTI1A PE=1 SV=2) HSP 1 Score: 139.043 bits (349), Expect = 4.353e-36 Identity = 102/195 (52.31%), Postives = 144/195 (73.85%), Query Frame = 3
Query: 69 MGDLFTEYEKDFGVLSADIVSKTNKIPNLHGVPKRTLIDDVEQKFXXXXXXXXXXXXXVRGLPGDRKNASSSRLKSYKDESKTLEQNFKKSKISMTDLEHARTELLAGEDGGQSEDQRSRLLENTERVERSNRRLEEGYRVCXXXXXXXXXXXXNLSRDRENMXXXXXXXXXXXXXXSSSSRILTGMMRRVIQNR 653
M F YE+DF VL+A+I SK ++P L K+ ++ +VE++ +E +ELLEQMDLEVR +P + S+R++SYK E LE +FK+S+I+ +D R ELL G+DG SE+QR+ LL+NTER+ERS+RRLE GY++ +ETE++G+E+L NLS DRE + R R+RLR T+ +L SSRILTGM+RR+IQNR
Sbjct: 1 MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEAKELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSD--EVRNELL-GDDGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDANLGKSSRILTGMLRRIIQNR 192 The following BLAST results are available for this feature:
BLAST of TCONS_00017162 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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