TCONS_00017171 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017171
Unique NameTCONS_00017171
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length474

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017171 ID=TCONS_00017171|Name=TCONS_00017171|organism=Clytia hemisphaerica|type=transcript|length=474bp
GAAAGAAGAAATCAACAATGCATTTCGATAAGAATAACGatGAAAACGGA
GTTagtcaaaaaacaaaattatcaaaatccaAAGAAGTGATTAGGAATAA
TGAGGGCGACAGTGATCAGTGGAAAGTCGATAAAGACAACGTAATAAGCT
CGAAAGATGATGTAACGAGTTCGAAAGATGGTGTAACGAGTTCGAAAGAT
GATGTAACGAGTTCGAAAGATGATGTAACGAGTTCGAAAGATGATGCAAC
AAGCTCGAAAGATGGTGTAACGAGTTCGAAAGATGATGAAACGAGTTCGA
AAGATGATGTAACGAGTTCGAAAGATGATGCAACAAGCTCGAAAGATGGT
GTAACGAGTTCGAAAGATGGTGTAACGAGCTCGAAAGATGGTGTAACGAG
TTCGAAAGATGATGCAACAAGCTCGAAAGATGGTGTAACGAGTTCGAAAG
ATGGTGTAACGAGCTCGAAAGATG
Run BLAST on NCBI

protein sequence of TCONS_00017171-protein

>TCONS_00017171-protein ID=TCONS_00017171-protein|Name=TCONS_00017171-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
KKKSTMHFDKNNDENGVSQKTKLSKSKEVIRNNEGDSDQWKVDKDNVISS
KDDVTSSKDGVTSSKDDVTSSKDDVTSSKDDATSSKDGVTSSKDDETSSK
DDVTSSKDDATSSKDGVTSSKDGVTSSKDGVTSSKDDATSSKDGVTSSKD
GVTSSKD
Run BLAST on NCBI

transcript from alignment at sc0000260:84330..85003-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017171 ID=TCONS_00017171|Name=TCONS_00017171|organism=Clytia hemisphaerica|type=transcript|length=674bp|location=Sequence derived from alignment at sc0000260:84330..85003- (Clytia hemisphaerica)
GAAAGAAGAAATCAACAATGCATTTCGATAAGAATAACGGTATATCTTTT
AAATAATTTGACTCAAAGTGTGGTTCTACTATATGTATTCTTGTCTAGAG
AGGCCGGAAAATCAACTTTCTCCATAGGCTGCCGTGGGTAAAAATTTGAT
ATTTTGGACTTGTGTTTTGACATTTGATGGAATTTGTTATTCGTTTATTT
TCCTTTTGAAAAATGTAGAAATTATATATATATTTTTAGATGAAAACGGA
GTTAGTCAAAAAACAAAATTATCAAAATCCAAAGAAGTGATTAGGAATAA
TGAGGGCGACAGTGATCAGTGGAAAGTCGATAAAGACAACGTAATAAGCT
CGAAAGATGATGTAACGAGTTCGAAAGATGGTGTAACGAGTTCGAAAGAT
GATGTAACGAGTTCGAAAGATGATGTAACGAGTTCGAAAGATGATGCAAC
AAGCTCGAAAGATGGTGTAACGAGTTCGAAAGATGATGAAACGAGTTCGA
AAGATGATGTAACGAGTTCGAAAGATGATGCAACAAGCTCGAAAGATGGT
GTAACGAGTTCGAAAGATGGTGTAACGAGCTCGAAAGATGGTGTAACGAG
TTCGAAAGATGATGCAACAAGCTCGAAAGATGGTGTAACGAGTTCGAAAG
ATGGTGTAACGAGCTCGAAAGATG

Coding sequence (CDS) from alignment at sc0000260:84330..85003-

>TCONS_00017171 ID=TCONS_00017171|Name=TCONS_00017171|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at sc0000260:84330..85003- (Clytia hemisphaerica)
ATGAAAACGGAGTTAGTCAAAAAACAAAATTATCAAAATCCAAAGAAGTG
ATTAGGAATAATGAGGGCGACAGTGATCAGTGGAAAGTCGATAAAGACAA
CGTAATAAGCTCGAAAGATGATGTAACGAGTTCGAAAGATGGTGTAACGA
GTTCGAAAGATGATGTAACGAGTTCGAAAGATGATGTAACGAGTTCGAAA
GATGATGCAACAAGCTCGAAAGATGGTGTAACGAGTTCGAAAGATGATGA
AACGAGTTCGAAAGATGATGTAACGAGTTCGAAAGATGATGCAACAAGCT
CGAAAGATGGTGTAACGAGTTCGAAAGATGGTGTAACGAGCTCGAAAGAT
GGTGTAACGAGTTCGAAAGATGATGCAACAAGCTCGAAAGATGGTGTAAC
GAGTTCGAAAGATGGTGTAACGAGCTCGAAAGATAAGAAGAAATCAACAA
TGCATTTCGATAAGAATAACGATGAAAACGGAGTTAGTCAAAAAACAAAA
TTATCAAAATCCAAAGAAGTGATTAGGAATAATGAGGGCGACAGTGATCA
GTGGAAAGTCGATAAAGACAACGTAATAAGCTCGAAAGATGATGTAACGA
GTTCGAAAGATGGTGTAACGAGTTCGAAAGATGATGTAACGAGTTCGAAA
GATGATGTAACGAGTTCGAAAGATGATGCAACAAGCTCGAAAGATGGTGT
AACGAGTTCGAAAGATGATGAAACGAGTTCGAAAGATGATGTAACGAGTT
CGAAAGATGATGCAACAAGCTCGAAAGATGGTGTAACGAGTTCGAAAGAT
GGTGTAACGAGCTCGAAAGATGGTGTAACGAGTTCGAAAGATGATGCAAC
AAGCTCGAAAGATGGTGTAACGAGTTCGAAAGATGGTGTAACGAGCTCGA
AAGATAAGAAGAAATCAACAATGCATTTCGATAAGAATAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009606XLOC_009606Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017171-proteinTCONS_00017171-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017171-exon-sc0000260-1575043694:84965..85003TCONS_00017171-exon-sc0000260-1575043694:84965..85003Clytia hemisphaericaexon
TCONS_00017171-exon-sc0000260-1575043694:84330..84764TCONS_00017171-exon-sc0000260-1575043694:84330..84764Clytia hemisphaericaexon
TCONS_00017171-exon-sc0000260-1510915933:84965..85003TCONS_00017171-exon-sc0000260-1510915933:84965..85003Clytia hemisphaericaexon
TCONS_00017171-exon-sc0000260-1510915933:84330..84764TCONS_00017171-exon-sc0000260-1510915933:84330..84764Clytia hemisphaericaexon
TCONS_00017171-exon-sc0000260-1491911889:84965..85003TCONS_00017171-exon-sc0000260-1491911889:84965..85003Clytia hemisphaericaexon
TCONS_00017171-exon-sc0000260-1491911889:84330..84764TCONS_00017171-exon-sc0000260-1491911889:84330..84764Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000260supercontigsc0000260:84330..85003 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.33918	0.303168	0.148301	0	0	4.69936	6.88714	0.902533	0.83845	3.79783	1.03299	0.486219	0.594793	0.380103	0.697979	1.43592	1.75119	0.426947	0.595692	1.16497	2.08352	1.19641	1.28892	6.77615	4.89496	0	0.195915	0	0.393328
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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