TCONS_00017173 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017173
Unique NameTCONS_00017173
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length337

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017173 ID=TCONS_00017173|Name=TCONS_00017173|organism=Clytia hemisphaerica|type=transcript|length=337bp
ATTTGCAATCGTCGACCTTGCCATAATGGCGGAATTTGTCGCGAGACGGA
TGATGACGAGGATTTTCAATGCATGTGTCCACGTGGTTTCATTGGAAAAA
CTTGTGAAGAGAGGCCGTGCTCACCCAATCCATGTATGAACGGAGCGACT
TGTTCAGAAGAAGGGAACAACGCCACTTGTATTTGCACCAAATGGACGAA
AGGCCAGACTTGTCAAATTGTATCACCATGCGCTCTCAAACCCTGTGGAC
CAAACGGATATTGTATTGATTCCGAATCGGGATTTAAAGTCCGATTGAAA
CCGATGcaatatttttgtatttgtaAACCGCCTTTCA
Run BLAST on NCBI

transcript from alignment at sc0000260:95833..97718-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017173 ID=TCONS_00017173|Name=TCONS_00017173|organism=Clytia hemisphaerica|type=transcript|length=1886bp|location=Sequence derived from alignment at sc0000260:95833..97718- (Clytia hemisphaerica)
ATTTGCAATCGTCGACCTTGCCATAATGGCGGAATTTGTCGCGAGACGGA
TGATGACGAGGATTTTCAATGCATGTGTCCACGTGGTTTCATTGGAAAAA
CTTGTGAAGGTAGGTCAAAGTTTTTCGACGCCTTATTGATATTTAAGTCT
TAGTCCACATTGTTGTCAAAGCAACAAACCATATCCGACATTAATTTTCA
CCTACGGTAGACTCCCCGGTTACCCGAAGTCCCACATGTTCGATGTTTTT
CCTCTTGGATCTACTTGCATTTCCCAGGCAAAAAGATTCCTCGGTTATTG
GAATTGTTTTTTTTTTGCTACAATTCATGATATTCATGACGTAATGTTTT
CCAATACCCTGGTTTGAGCCAATAGTGGCAAATTTTAGCTAGACAAAAGT
TGTATGAAATTTTCACCTACTGGCTAAAACCGGGGTCTTTCCGTAGAAAA
TATTACGTCATTAATATCATGAATTAGACCGTCTTTTTTCATCACTTTTT
ATGCAGGGTGCTAATTTGGCCTAAATTTCCCTCAATCTTTTGAAGTTTTG
TGTTTTGAGACATTCTTCTGTTAGAGAGAAAAAAAAGATTTTGATATATT
TTGTCTTTTTCAACTTATTCAAGCTGACTTTGCAAGAGTTGAATGTTTTC
GAAAAGCATATTTTTTCCACGCAAAAACCCACCTCTAAAGTTATATCTAA
TGATGTTTCTAAATCCTCAATGTTTGATTTTAGAGAGGCCGTGCTTCAAT
CCATGTATAAATAATGGCCTAATTTACTATGAAACTCATGTTTCTAAATC
CTCAATATTTTATTTTAGAGAGGTCGTGCTCACCCAATCCATGTATAAAT
AATGGCCTCATTTACTATGAAACTCATGTTTCTAAATCCTCAATGTTTTA
TTTTAGAGAGGCCGTGCTCACCCAATCCATGTATAAATAATGGTCTCGTT
TACTATGAAACTCATGTTTCTAAATCCTCAATGTTTTATTTTAGAGAGGC
CGTGCTCACCCAATCCATGTATGAACGGAGCGACTTGTTCAGAAGAAGGG
AACAACGCCACTTGTATTTGCACCAAATGGACGAAAGGCCAGACTTGTCA
AAGTAAGGATCATAGCCACTGAACTCAATGTAACCCTCAATATAATAAAT
CCGGTCACGCCAAGTCTGTTGGATCGGAGTTTTTAAAATAGGGGTTTCCT
TAGGCTGACGGATTCGTGTTCTACCTGGGGTTTTGTAGAGGTCTGTGGTT
CAGACTAGGGTTTCCTTTATTTGCCTGATATCAAACGGACCACTCTTCAT
CACAAATAACTGACGAAAAATAATCTAAATTTTTGGCAATTTTGACTTGT
ATTCTTTTGGCCAAAAAATAAATTTTGTACCGCAAATAATATATAATGAC
CTTGGTTTGACCGGCTTTGTGTATAAATTTATATTCCGATAAGAATAATA
CCTAGATGATGCTTCTTCCGTTAGAGGGATAGTAAATGCGGGAGAAGTAT
ATGCGCAGTAGAGTCAGCTATCGCGGTGGTTTGGGGAAAGTAGTGGCGGT
AGAGTTTGGAAAAAATGGACGATACACTGTAAACACCTCCGCCACTGCTT
ACTCCGCCCTGGGCTAACCATTGTTCTTAAATTCATCCCTGCCTCCTAAA
CTTTCCCTTTCTTAGTGACCTTGTTACCTTACCAAAAATATGTCTAGCCT
ATAAAAGAATCCTTGCGGCAATGGTTTTTATGTATACATTTTCGCATTTT
TTTTCTTTTTCTACAGTTGTATCACCATGCGCTCTCAAACCCTGTGGACC
AAACGGATATTGTATTGATTCCGAATCGGGATTTAAAGTCCGATTGAAAC
CGATGCAATATTTTTGTATTTGTAAACCGCCTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009607XLOC_009607Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017173-exon-sc0000260-1575043694:97610..97718TCONS_00017173-exon-sc0000260-1575043694:97610..97718Clytia hemisphaericaexon
TCONS_00017173-exon-sc0000260-1575043694:96617..96724TCONS_00017173-exon-sc0000260-1575043694:96617..96724Clytia hemisphaericaexon
TCONS_00017173-exon-sc0000260-1575043694:95833..95952TCONS_00017173-exon-sc0000260-1575043694:95833..95952Clytia hemisphaericaexon
TCONS_00017173-exon-sc0000260-1510915933:97610..97718TCONS_00017173-exon-sc0000260-1510915933:97610..97718Clytia hemisphaericaexon
TCONS_00017173-exon-sc0000260-1510915933:96617..96724TCONS_00017173-exon-sc0000260-1510915933:96617..96724Clytia hemisphaericaexon
TCONS_00017173-exon-sc0000260-1510915933:95833..95952TCONS_00017173-exon-sc0000260-1510915933:95833..95952Clytia hemisphaericaexon
TCONS_00017173-exon-sc0000260-1491911889:97610..97718TCONS_00017173-exon-sc0000260-1491911889:97610..97718Clytia hemisphaericaexon
TCONS_00017173-exon-sc0000260-1491911889:96617..96724TCONS_00017173-exon-sc0000260-1491911889:96617..96724Clytia hemisphaericaexon
TCONS_00017173-exon-sc0000260-1491911889:95833..95952TCONS_00017173-exon-sc0000260-1491911889:95833..95952Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000260supercontigsc0000260:95833..97718 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.904179	0	0.0823408	0	0.724584	1.19382	0	0.871137	1.56076	2.1084	0	0.232518	1.71086	0.41698	0.968867	1.15934	0.439397	0	0	0	0	1.12046	0	2.61343	0.157805	0.54766	0	0.150508
Blast
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BLAST of TCONS_00017173 vs. Swiss-Prot (Human)
Match: FAT1 (Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.706e-16
Identity = 35/95 (36.84%), Postives = 43/95 (45.26%), Query Frame = 1 
Query:    4 CNRRPCHNGGICRETDDDEDFQCMCPRGFIGKTCE--ERPCSPNPCMNGATCSEEGNNATCICTKWTKGQTCQIVSPCALKPCGPNGYCIDSESG 282
            C   PC NGG+C  +     + C C   +IG  CE    PCS  PC+ G TC  +     C C     GQ CQ+   C  +PC   G C DS  G
Sbjct: 4017 CASNPCQNGGVCNPSPAG-GYYCKCSALYIGTHCEISVNPCSSKPCLYGGTCVVDNGGFVCQCRGLYTGQRCQLSPYCKDEPCKNGGTCFDSLDG 4110
The following BLAST results are available for this feature:
BLAST of TCONS_00017173 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FAT11.706e-1636.84Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 S... [more]
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