TCONS_00017194 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017194
Unique NameTCONS_00017194
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017194 ID=TCONS_00017194|Name=TCONS_00017194|organism=Clytia hemisphaerica|type=transcript|length=1510bp
acCGAAGAAAcattaattattattatttataatTACCCTAATATACAATT
CTTGTAACATAactaaatatatataatatcaaaaagcaataaatattaaa
attattatCATTTAAAGAACAAAATTCTCTATAAACTacataattataaa
aaaatgggtaatttcatttcaaaaaaattgaaacaaccGGCCGTTTTTCA
TAACCTATTGGCGTCCAGTCATCAgacgctgcccctcctgaaGGTACCaa
tattttggtaaaaacagcctttttcgTGGTAAAACACTAGAAAACGTGAC
TTttttgcctttctaaaatatggcctgaacAACTAGTGTAAAATTAAAAA
GGACTTTTACCCCCtgttaatttatattttttagcgAGAACCAAATCAAA
CGACTGGCAGAACATAATAATGCAAAAATGAATGCATCAATTTGAAAATG
TAAAGGTCAACAAACTTTGGAGAGATCatgagtaggagttttacgctcga
aacgaaggaagatatgacgtagcctagagCCCAAAGAGAAATATATTCAA
ATACGTCAGGCGTACAAATTTTTGTAGGTCGAAAATTTGATTTGGGTCAT
TGATTTGAAGTTTGCCAAGCAAAACAAGGCCTGTTCAAATCATAGAAGAA
ATAAGTaagaatcaaaaataaaatgagaCTTACTGATTTtgatcttcttc
attttcttcagcttttcaaGTAAATTCCATTTGaagtttatttattttcc
ttttaaataAGTTCACTTGGAGAGTGTTTTGTTGTAGTTTTCCACAACTA
TTGAATAGTTCCTTCACCAGGTTTAATGTCAACCAGTCTTTACCAATAGG
CACATTTAAATCTTTGCATGAGATTTATTAGGTCTACATAGATTCGTCAG
TATTATCAACCATAACTCTAGCAGAAAAATAATTCCATTTCAGCTCTATA
TTTCACTTGGTAAAGCTGTAGAGAAAAACACAAGAATGTTCGACGTTCTG
ACGTTTgtctttcaagtttttttatcaactttcattTGGTATCCATCTAG
ACTATATGATTTCGTTGATTTTGAATTCGTGATCTAAGTATTTAACCTCT
GGTTCTCTCTGCTGTAGGAGGTATTTATTCTGGTTCACAATGCTATCTTG
ACCTGCCTTGCCAACATTTAATTCGTTCATTCACCTCTTCATTTACAAAG
CAACAAATAAAATTCCTGTTGGAATTAATTCGACTCAACTCGAGATATAA
AAAGGTTGTCTTTCTGATGATACGAGCCCTCCCCATTGGGGAGGCTGTCT
TTGTACTCTGTACAAAATGAGATTGAAAGAAACCACGTTGTGTTGCCATG
ACACCATTCTCTCCAGTCAGCACCTTGTTGAGGAAGCCATTGTGGGTTAT
TTTTTGGGTTCGCTACTTTTGTGAAGCATAATAGATCACCACACATATAA
CAACCAGAACCATCAAAATTGCCAAACACATCAACATCCGGTTCTGGATT
ACCCTACACA
Run BLAST on NCBI

transcript from alignment at sc0000260:343827..345403-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017194 ID=TCONS_00017194|Name=TCONS_00017194|organism=Clytia hemisphaerica|type=transcript|length=1577bp|location=Sequence derived from alignment at sc0000260:343827..345403- (Clytia hemisphaerica)
ACCGAAGAAACATTAATTATTATTATTTATAATTACCCTAATATACAATT
CTTGTAACATAACTAAATATATATAATATCAAAAAGCAATAAATATTAAA
ATTATTATCATTTAAAGAACAAAATTCTCTATAAACTACATAATTATAAA
AAAATGGGTAATTTCATTTCAAAAAAATTGAAACAACCGGCCGTTTTTCA
TAACCTATTGGCGTCCAGTCATCAGACGCTGCCCCTCCTGAAGGTACCAA
TATTTTGGTAAAAACAGCCTTTTTCGTGGTAAAACACTAGAAAACGTGAC
TTTTTTGCCTTTCTAAAATATGGCCTGAACAACTAGTGTAAAATTAAAAA
GGACTTTTACCCCCTGTTAATTTATATTTTTTAGCGAGAACCAAATCAAA
CGACTGGCAGAACATAATAATGCAAAAATGAATGCATCAATTTGAAAATG
TAAAGGTCAACAAACTTTGGAGAGATCATGAGTAGGAGTTTTACGCTCGA
AACGAAGGAAGATATGACGTAGCCTAGAGCCCAAAGAGAAATATATTCAA
ATACGTCAGGCGTACAAATTTTTGTAGGTCGAAAATTTGATTTGGGTCAT
TGATTTGAAGTTTGCCAAGCAAAACAAGGCCTGTTCAAATCATAGAAGAA
ATAAGTAAGAATCAAAAATAAAATGAGACTTACTGATTTTGATCTTCTTC
ATTTTCTTCAGCTTTTCAAGTAAATTCCATTTGAAGTTTATTTATTTTCC
TTTTAAATAAGTTCACTTGGAGAGTGTTTTGTTGTAGTTTTCCACAACTA
TTGAATAGTTCCTTCACCAGGTTTAATGTCAACCAGTCTTTACCAATAGG
CACATTTAAATCTTTGCATGAGATTTATTAGGTCTACATAGATTCGTCAG
TATTATCAACCATAACTCTAGCAGAAAAATAATTCCATTTCAGCTCTATA
TTTCACTTGGTAAAGCTGTAGAGAAAAACACAAGAATGTTCGACGTTCTG
ACGTTTGTCTTTCAAGTTTTTTTATCAACTTTCATTTGGTATCCATCTAG
ACTATATGATTTCGTTGATTTTGAATTCGTGATCTAAGTATTTAACCTCT
GGTTCTCTCTGCTGTAGGAGGTATTTATTCTGGTTCACAATGCTATCTTG
ACCTGCCTTGCCAACATTTAATTCGTTCATTCACCTCTTCATTTACAAAG
CAACAAATAAAATTCCTGTTGGAATTAATTCGACTCAACTCGAGATATAA
AAAGGTTGTCTTTCTGATGATACGAGCCCTCCCCATTGGGGAGGCTGTCT
TTGTACTCTGTACAAAATGAGATTGAAAGAAACCACGTTGTGTTGCCATG
ACACCATTCTCTCCAGTCAGCACCTTGTTGAGGAAGCCATTGTGGGTTAT
TTTTTGGGTTCGCTACTTTTGTGAAGCATAATAGATCACCACACATATAA
CAACCAGAANGGGTTATTTTTTGGGTTCACTACTTTTGTGAAGCATAATA
GATCACCACACATATAACAACCAGAACCATCAAAATTGCCAAACACATCA
ACATCCGGTTCTGGATTACCCTACACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009614XLOC_009614Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017194-exon-sc0000260-1575043694:343960..345403TCONS_00017194-exon-sc0000260-1575043694:343960..345403Clytia hemisphaericaexon
TCONS_00017194-exon-sc0000260-1575043694:343827..343892TCONS_00017194-exon-sc0000260-1575043694:343827..343892Clytia hemisphaericaexon
TCONS_00017194-exon-sc0000260-1510915933:343960..345403TCONS_00017194-exon-sc0000260-1510915933:343960..345403Clytia hemisphaericaexon
TCONS_00017194-exon-sc0000260-1510915933:343827..343892TCONS_00017194-exon-sc0000260-1510915933:343827..343892Clytia hemisphaericaexon
TCONS_00017194-exon-sc0000260-1491911889:343960..345403TCONS_00017194-exon-sc0000260-1491911889:343960..345403Clytia hemisphaericaexon
TCONS_00017194-exon-sc0000260-1491911889:343827..343892TCONS_00017194-exon-sc0000260-1491911889:343827..343892Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000260supercontigsc0000260:343827..345403 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.0996615	0	0	0.0930094	0.0901262	0.0658446	0	0	0	0	0	0	0	0	0	0	0	0.177859	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017194 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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