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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017199 ID=TCONS_00017199|Name=TCONS_00017199|organism=Clytia hemisphaerica|type=transcript|length=923bp
TAGTTACCATTTTTATACATTTGTATTCCTTAGCGACTGTGCTACCGTAT
TATTTGACACTCGATTTAGCCTGGACGTCAGACATTGGTTTGTCATGTGT
TGAACGATGGAGCGTAGAGGCTGGTAAAAATTACaccatatttttgtttt
tagtaCAAATAGGCGTTCCATTGCCTGTAATGGTTGCTTTATATGCTCTA
TCATGGCGCATCATCGAACGCCGGAACACAAAAACCATAAAGTTCATGGA
TAATGTACAATTAAAGTCGCACCACTATCCATTCAtcgtgaaatattttt
gttgctgtttcttaaaaaatagaATCGCTTTTTCTCAATGTCGGTCAGAT
TTAAAACGTCAGTTATCTATCACATCGGAAGTCTCTATAGCGCGGCAAAA
GCAAACAAAATATTACTTGAACATGTTTACCGTGGTTGTCCTATTGTTTG
CTATATGCATGCTACCCAATCAGATCACTTGGTTTTACATGGCGTTTGAA
CCCAAACCTCTTAGCCTCTACGTCACTGTTCTATTTTATTGGTTAACCTT
CTCCAATGCTGTTCTTAATCCCTGGATATATGCAGGATGTAATCCCTTTT
TTAAACGGGCTTATCGGGGTTTTATACGGAAATTATTGTCACCGTGCCGG
AAGAAGGATCGGTACCGGCATATTATCTCAATGATGCAGCGCACACGTGC
TCCAACGGTCGTCCAGCATCACGTGACCGAGAAGGACCAATCAAAAGCCA
ATAACGATTTCTTATGGATAACACCGTGGAGTGTGCAAGATCATTTCGGA
GGTGGGTTAAAACATAAAACTGTTTCAAAAAATGAGGTGAATATAGACCC
TTACGATCTATATGACCCTGAATACACGGAGAAGAAATTACCGCGGATAA
CACCTTTCATTAGACCGAAATTA Run BLAST on NCBI protein sequence of TCONS_00017199-protein >TCONS_00017199-protein ID=TCONS_00017199-protein|Name=TCONS_00017199-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
VTIFIHLYSLATVLPYYLTLDLAWTSDIGLSCVERWSVEAGKNYTIFLFL
VQIGVPLPVMVALYALSWRIIERRNTKTIKFMDNVQLKSHHYPFIVKYFC
CCFLKNRIAFSQCRSDLKRQLSITSEVSIARQKQTKYYLNMFTVVVLLFA
ICMLPNQITWFYMAFEPKPLSLYVTVLFYWLTFSNAVLNPWIYAGCNPFF
KRAYRGFIRKLLSPCRKKDRYRHIISMMQRTRAPTVVQHHVTEKDQSKAN
NDFLWITPWSVQDHFGGGLKHKTVSKNEVNIDPYDLYDPEYTEKKLPRIT
PFIRPKL Run BLAST on NCBI transcript from alignment at sc0000260:136627..137549 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017199 ID=TCONS_00017199|Name=TCONS_00017199|organism=Clytia hemisphaerica|type=transcript|length=923bp|location=Sequence derived from alignment at sc0000260:136627..137549 (Clytia hemisphaerica)
TAATTTCGGTCTAATGAAAGGTGTTATCCGCGGTAATTTCTTCTCCGTGT
ATTCAGGGTCATATAGATCGTAAGGGTCTATATTCACCTCATTTTTTGAA
ACAGTTTTATGTTTTAACCCACCTCCGAAATGATCTTGCACACTCCACGG
TGTTATCCATAAGAAATCGTTATTGGCTTTTGATTGGTCCTTCTCGGTCA
CGTGATGCTGGACGACCGTTGGAGCACGTGTGCGCTGCATCATTGAGATA
ATATGCCGGTACCGATCCTTCTTCCGGCACGGTGACAATAATTTCCGTAT
AAAACCCCGATAAGCCCGTTTAAAAAAGGGATTACATCCTGCATATATCC
AGGGATTAAGAACAGCATTGGAGAAGGTTAACCAATAAAATAGAACAGTG
ACGTAGAGGCTAAGAGGTTTGGGTTCAAACGCCATGTAAAACCAAGTGAT
CTGATTGGGTAGCATGCATATAGCAAACAATAGGACAACCACGGTAAACA
TGTTCAAGTAATATTTTGTTTGCTTTTGCCGCGCTATAGAGACTTCCGAT
GTGATAGATAACTGACGTTTTAAATCTGACCGACATTGAGAAAAAGCGAT
tctattttttaagaaacagcaacaaaaatatttcacgaTGAATGGATAGT
GGTGCGACTTTAATTGTACATTATCCATGAACTTTATGGTTTTTGTGTTC
CGGCGTTCGATGATGCGCCATGATAGAGCATATAAAGCAACCATTACAGG
CAATGGAACGCCTATTTGtactaaaaacaaaaatatggtGTAATTTTTAC
CAGCCTCTACGCTCCATCGTTCAACACATGACAAACCAATGTCTGACGTC
CAGGCTAAATCGAGTGTCAAATAATACGGTAGCACAGTCGCTAAGGAATA
CAAATGTATAAAAATGGTAACTA Coding sequence (CDS) from alignment at sc0000260:136627..137549 >TCONS_00017199 ID=TCONS_00017199|Name=TCONS_00017199|organism=Clytia hemisphaerica|type=CDS|length=921bp|location=Sequence derived from alignment at sc0000260:136627..137549 (Clytia hemisphaerica)
TAATTTCGGTCTAATGAAAGGTGTTATCCGCGGTAATTTCTTCTCCGTGT
ATTCAGGGTCATATAGATCGTAAGGGTCTATATTCACCTCATTTTTTGAA
ACAGTTTTATGTTTTAACCCACCTCCGAAATGATCTTGCACACTCCACGG
TGTTATCCATAAGAAATCGTTATTGGCTTTTGATTGGTCCTTCTCGGTCA
CGTGATGCTGGACGACCGTTGGAGCACGTGTGCGCTGCATCATTGAGATA
ATATGCCGGTACCGATCCTTCTTCCGGCACGGTGACAATAATTTCCGTAT
AAAACCCCGATAAGCCCGTTTAAAAAAGGGATTACATCCTGCATATATCC
AGGGATTAAGAACAGCATTGGAGAAGGTTAACCAATAAAATAGAACAGTG
ACGTAGAGGCTAAGAGGTTTGGGTTCAAACGCCATGTAAAACCAAGTGAT
CTGATTGGGTAGCATGCATATAGCAAACAATAGGACAACCACGGTAAACA
TGTTCAAGTAATATTTTGTTTGCTTTTGCCGCGCTATAGAGACTTCCGAT
GTGATAGATAACTGACGTTTTAAATCTGACCGACATTGAGAAAAAGCGAT
tctattttttaagaaacagcaacaaaaatatttcacgaTGAATGGATAGT
GGTGCGACTTTAATTGTACATTATCCATGAACTTTATGGTTTTTGTGTTC
CGGCGTTCGATGATGCGCCATGATAGAGCATATAAAGCAACCATTACAGG
CAATGGAACGCCTATTTGtactaaaaacaaaaatatggtGTAATTTTTAC
CAGCCTCTACGCTCCATCGTTCAACACATGACAAACCAATGTCTGACGTC
CAGGCTAAATCGAGTGTCAAATAATACGGTAGCACAGTCGCTAAGGAATA
CAAATGTATAAAAATGGTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017199-exon-sc0000260-1491911889:136627..137549 | TCONS_00017199-exon-sc0000260-1491911889:136627..137549 | Clytia hemisphaerica | exon |
| TCONS_00017199-exon-sc0000260-1510915933:136627..137549 | TCONS_00017199-exon-sc0000260-1510915933:136627..137549 | Clytia hemisphaerica | exon |
| TCONS_00017199-exon-sc0000260-1575043694:136627..137549 | TCONS_00017199-exon-sc0000260-1575043694:136627..137549 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000260 | supercontig | sc0000260:136627..137549 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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