TCONS_00017201 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017201
Unique NameTCONS_00017201
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length692

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017201 ID=TCONS_00017201|Name=TCONS_00017201|organism=Clytia hemisphaerica|type=transcript|length=692bp
TGTTAATGTCACGTAAGGACGACACCTTGTTTTTTCAACTTATCAATATC
CGCTTTCTGGTCTTTGAtctcttctttttcctttttcttcatttttcgtt
GTTCCTCTCTCTTCTTTTCCATATAAGTTTTCATCGGAACATACGGTTTG
ATAAAAGTCCCTCCTTCGGACCCATTAATGGCCAATTTCTGAAAATCATC
AATCATTTCAGCAGTTTGTATCTCTTTATGAATAACGGCGTTCACGATTT
TATGTAATTGCCAATGCCCCTCTTCTTGTAGATTCTCCGACCCATTCCGC
GCGGTCTCTTTATAATCAGGCCGCGCGTCTGGGAATTCAAGAACTGGTTC
CCAGTCCACGTGTTCGTCATCAGCCTCGATCTCAGGCTCTTCTTCGTCAG
TGTGATCTTTGTCTGGTTGCGGTCGGTTTTTTACCGGTACGTCATGTGTT
CCAACGAGAATGTGATGTGAAAAAATGCCGACGAAGAGAAGTAAGCAGCT
CCACATTTTGAACGAAAGTCTCCAATTCAAAACAATGTAAACGCCAATAT
TGTCTGAATCGACACTTCTTATGAATTACAGTTCTATGTGGTCTAATGGT
CTAATTCCTTGCCCCGGCTTTTGAATGGATTAAGCAGAATTTGTTTTCAA
ACCCTACGATAtattattgaattgaaaaaattatgatTCCTT
Run BLAST on NCBI

protein sequence of TCONS_00017201-protein

>TCONS_00017201-protein ID=TCONS_00017201-protein|Name=TCONS_00017201-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MWSCLLLFVGIFSHHILVGTHDVPVKNRPQPDKDHTDEEEPEIEADDEHV
DWEPVLEFPDARPDYKETARNGSENLQEEGHWQLHKIVNAVIHKEIQTAE
MIDDFQKLAINGSEGGTFIKPYVPMKTYMEKKREEQRKMKKKEKEEIKDQ
KADIDKLKKQGVVLT
Run BLAST on NCBI

transcript from alignment at sc0000260:144771..145462

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017201 ID=TCONS_00017201|Name=TCONS_00017201|organism=Clytia hemisphaerica|type=transcript|length=692bp|location=Sequence derived from alignment at sc0000260:144771..145462 (Clytia hemisphaerica)
AAGGAatcataattttttcaattcaataataTATCGTAGGGTTTGAAAAC
AAATTCTGCTTAATCCATTCAAAAGCCGGGGCAAGGAATTAGACCATTAG
ACCACATAGAACTGTAATTCATAAGAAGTGTCGATTCAGACAATATTGGC
GTTTACATTGTTTTGAATTGGAGACTTTCGTTCAAAATGTGGAGCTGCTT
ACTTCTCTTCGTCGGCATTTTTTCACATCACATTCTCGTTGGAACACATG
ACGTACCGGTAAAAAACCGACCGCAACCAGACAAAGATCACACTGACGAA
GAAGAGCCTGAGATCGAGGCTGATGACGAACACGTGGACTGGGAACCAGT
TCTTGAATTCCCAGACGCGCGGCCTGATTATAAAGAGACCGCGCGGAATG
GGTCGGAGAATCTACAAGAAGAGGGGCATTGGCAATTACATAAAATCGTG
AACGCCGTTATTCATAAAGAGATACAAACTGCTGAAATGATTGATGATTT
TCAGAAATTGGCCATTAATGGGTCCGAAGGAGGGACTTTTATCAAACCGT
ATGTTCCGATGAAAACTTATATGGAAAAGAAGAGAGAGGAACaacgaaaa
atgaagaaaaaggaaaaagaagagaTCAAAGACCAGAAAGCGGATATTGA
TAAGTTGAAAAAACAAGGTGTCGTCCTTACGTGACATTAACA

Coding sequence (CDS) from alignment at sc0000260:144771..145462

>TCONS_00017201 ID=TCONS_00017201|Name=TCONS_00017201|organism=Clytia hemisphaerica|type=CDS|length=498bp|location=Sequence derived from alignment at sc0000260:144771..145462 (Clytia hemisphaerica)
ATGTGGAGCTGCTTACTTCTCTTCGTCGGCATTTTTTCACATCACATTCT
CGTTGGAACACATGACGTACCGGTAAAAAACCGACCGCAACCAGACAAAG
ATCACACTGACGAAGAAGAGCCTGAGATCGAGGCTGATGACGAACACGTG
GACTGGGAACCAGTTCTTGAATTCCCAGACGCGCGGCCTGATTATAAAGA
GACCGCGCGGAATGGGTCGGAGAATCTACAAGAAGAGGGGCATTGGCAAT
TACATAAAATCGTGAACGCCGTTATTCATAAAGAGATACAAACTGCTGAA
ATGATTGATGATTTTCAGAAATTGGCCATTAATGGGTCCGAAGGAGGGAC
TTTTATCAAACCGTATGTTCCGATGAAAACTTATATGGAAAAGAAGAGAG
AGGAACaacgaaaaatgaagaaaaaggaaaaagaagagaTCAAAGACCAG
AAAGCGGATATTGATAAGTTGAAAAAACAAGGTGTCGTCCTTACGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009621XLOC_009621Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017201-proteinTCONS_00017201-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017201-exon-sc0000260-1491911889:144771..145462TCONS_00017201-exon-sc0000260-1491911889:144771..145462Clytia hemisphaericaexon
TCONS_00017201-exon-sc0000260-1510915933:144771..145462TCONS_00017201-exon-sc0000260-1510915933:144771..145462Clytia hemisphaericaexon
TCONS_00017201-exon-sc0000260-1575043694:144771..145462TCONS_00017201-exon-sc0000260-1575043694:144771..145462Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000260supercontigsc0000260:144771..145462 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.396221	0.15655	3.58854	4.06682	0.618973	0.383349	3.49763	1.76109	3.22418	2.38443	2.25228	6.08738	4.1907	4.46489	0	0	1.77546	1.35097	1.09486	1.68449	2.1293	1.90035	0.604311	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017201 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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