TCONS_00017207 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017207
Unique NameTCONS_00017207
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017207 ID=TCONS_00017207|Name=TCONS_00017207|organism=Clytia hemisphaerica|type=transcript|length=364bp
ATAATATTGTTTGTTACCTTTGCCCCTATCAAGCCTCTTGCAAAGACGAC
ATTATTCGAAGTAAAGGAAATTACTGGGGATTAGCTGACAGCTCTGGTAA
AGTGACATTCTATTCATGTCCTCCTTTATATTGTTGTTCGTCTTTGGAAA
CGTGCGAGTCATACAACACTTGTGCTAGGAATAGGGAAGGGAGACTTTGC
GGTGATTGCCAAAAAGGACATGTTTTATCTTTGTTCAGTCACAACAAATG
TACGGATAAATCGTGTTGTGAATATTCGTGGACTGTTTGGTTGGGATATA
TATTTATGGCTGCTTTGATTTGTCTGTTTTTCTTGTTCAACAAAGACGTT
TGGAACTACATGAG
Run BLAST on NCBI

protein sequence of TCONS_00017207-protein

>TCONS_00017207-protein ID=TCONS_00017207-protein|Name=TCONS_00017207-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
NIVCYLCPYQASCKDDIIRSKGNYWGLADSSGKVTFYSCPPLYCCSSLET
CESYNTCARNREGRLCGDCQKGHVLSLFSHNKCTDKSCCEYSWTVWLGYI
FMAALICLFFLFNKDVWNYM
Run BLAST on NCBI

transcript from alignment at sc0000260:284859..285222

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017207 ID=TCONS_00017207|Name=TCONS_00017207|organism=Clytia hemisphaerica|type=transcript|length=364bp|location=Sequence derived from alignment at sc0000260:284859..285222 (Clytia hemisphaerica)
CTCATGTAGTTCCAAACGTCTTTGTTGAACAAGAAAAACAGACAAATCAA
AGCAGCCATAAATATATATCCCAACCAAACAGTCCACGAATATTCACAAC
ACGATTTATCCGTACATTTGTTGTGACTGAACAAAGATAAAACATGTCCT
TTTTGGCAATCACCGCAAAGTCTCCCTTCCCTATTCCTAGCACAAGTGTT
GTATGACTCGCACGTTTCCAAAGACGAACAACAATATAAAGGAGGACATG
AATAGAATGTCACTTTACCAGAGCTGTCAGCTAATCCCCAGTAATTTCCT
TTACTTCGAATAATGTCGTCTTTGCAAGAGGCTTGATAGGGGCAAAGGTA
ACAAACAATATTAT

Coding sequence (CDS) from alignment at sc0000260:284859..285222

>TCONS_00017207 ID=TCONS_00017207|Name=TCONS_00017207|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at sc0000260:284859..285222 (Clytia hemisphaerica)
CATGTAGTTCCAAACGTCTTTGTTGAACAAGAAAAACAGACAAATCAAAG
CAGCCATAAATATATATCCCAACCAAACAGTCCACGAATATTCACAACAC
GATTTATCCGTACATTTGTTGTGACTGAACAAAGATAAAACATGTCCTTT
TTGGCAATCACCGCAAAGTCTCCCTTCCCTATTCCTAGCACAAGTGTTGT
ATGACTCGCACGTTTCCAAAGACGAACAACAATATAAAGGAGGACATGAA
TAGAATGTCACTTTACCAGAGCTGTCAGCTAATCCCCAGTAATTTCCTTT
ACTTCGAATAATGTCGTCTTTGCAAGAGGCTTGATAGGGGCAAAGGTAAC
AAACAATATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009627XLOC_009627Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017207-proteinTCONS_00017207-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017207-exon-sc0000260-1491911889:284859..285222TCONS_00017207-exon-sc0000260-1491911889:284859..285222Clytia hemisphaericaexon
TCONS_00017207-exon-sc0000260-1510915933:284859..285222TCONS_00017207-exon-sc0000260-1510915933:284859..285222Clytia hemisphaericaexon
TCONS_00017207-exon-sc0000260-1575043694:284859..285222TCONS_00017207-exon-sc0000260-1575043694:284859..285222Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000260supercontigsc0000260:284859..285222 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.223202	0.346313	0	0	0	0	0	0	0	0	0	0.761133	0.790444	0.259941	0.557913	0.216043	0	0.769615	0.281316	0	0	0.636198	0	0	0	0	0	0.508097	0.258835
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017207 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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