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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017225 ID=TCONS_00017225|Name=TCONS_00017225|organism=Clytia hemisphaerica|type=transcript|length=2517bpRun BLAST on NCBI protein sequence of TCONS_00017225-protein >TCONS_00017225-protein ID=TCONS_00017225-protein|Name=TCONS_00017225-protein|organism=Clytia hemisphaerica|type=polypeptide|length=777bp MSVKKAVKDPRNTKSTNLTVTTTENLILTTPPPTVKVSGSTEGESDELRVRun BLAST on NCBI transcript from alignment at sc0000261:147087..215350+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017225 ID=TCONS_00017225|Name=TCONS_00017225|organism=Clytia hemisphaerica|type=transcript|length=68264bp|location=Sequence derived from alignment at sc0000261:147087..215350+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000261:147087..215350+ >TCONS_00017225 ID=TCONS_00017225|Name=TCONS_00017225|organism=Clytia hemisphaerica|type=CDS|length=46680bp|location=Sequence derived from alignment at sc0000261:147087..215350+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00017225 vs. Swiss-Prot (Human)
Match: K319L (Dyslexia-associated protein KIAA0319-like protein OS=Homo sapiens GN=KIAA0319L PE=1 SV=2) HSP 1 Score: 533.487 bits (1373), Expect = 1.399e-173 Identity = 297/655 (45.34%), Postives = 401/655 (61.22%), Query Frame = 1
Query: 301 ELRVSAGDDSILTLPENKITLYASAWPKEKKEGDYKYKWSQISAPTNSHGEIEGKNTKSVKLTKLGLPGLYTFKLEVTSTVDSKHGVGFVNITVKEAARKNKPPRAEVFPKDQTIMLPTNTIILDASKSSDDDKIVSYKWEELKGPIKENTIFTSSDKKILELKNLVAGVYKFKLTVTDSNGETDSTEARVNVKKEQDYPPEANAGNDVVIRLPNNSVILDGSRSKDDKGKLLYAWRKTPESP--ICDLTGSSQAKLKVSRMVVGTYAFVLKVTDSSGQANEAQVKVVVLPEENTVPVAKAGDDKEIVYPDDSTTLDGSKSTDNSKITSYLWQKISGPDKIKIVGATNAKVHLTDLVPGTYVIKLTVTDDKKLTGSDTVKIHVKKNHNDPPIAVAGQDHVVYLPSRTVSIDGSKSHDDGLIDAFKWTRAGLSPAAGTVVNASDQQAVLQLTDLVKGQYTFQLTVTDDKGLTGSDEVSVYVKENPFSSNLVEMYLGIDINKFTEEDKKQLLRKISVLLEVGSEFVFVQGISDLGFKKGVKLIFYVKDPNFEDRRFDGKFVADTLKQKVGNGGKLFDI-TMLRVEPYVCRKKCSGHGYCDRVSKKCVCDAFWTANFFKAHLGDKESNCDWSILYMSVVIFGAFLLLIGLSWT-ICFC 2253
EL VSAG+ +TLP+N++ L A + K Y Y W I+ P + GE+EGK+++ +KL+KL PGLY FK+ V + HG G+VN+TVK RKN+PP A V P+ Q I LPT + ++D S+S+DDDKIV Y WEELKGP++E I S D IL+L LV G Y F LTV DS+G T+ST A + V K DYPP ANAG + VI LP NS+ L G++S DD G Y W +P S + ++ G L++S M G Y + L VTD+ GQ AQV V+V PE N P A AG DKE+ P DSTTLDGSKS+D+ KI SYLW+K GPD +++ A ++ +T L GTYV LTV D++ L +V + VK+ N PPIA + V+ LP+ T +DGSKS DD I ++ WTR SPAAG V+N SD +L L++LV+G YTF L VTD KG + +D +V VK +P +NLVE+ L I++++ TE K +R+I VLL V + VQ I ++ K++F+V++ + F G VA LK ++ F I L V C+ CS HG+CD +K+C+CD FW NF K L D +SNC+WS+LY+ + F + L LSWT IC C
Sbjct: 308 ELVVSAGESVQITLPKNEVQLNAYVLQEPPKGETYTYDWQLITHPRDYSGEMEGKHSQILKLSKL-TPGLYEFKVIVEG--QNAHGEGYVNVTVKPEPRKNRPPIAIVSPQFQEISLPTTSTVIDGSQSTDDDKIVQYHWEELKGPLREEKI--SEDTAILKLSKLVPGNYTFSLTVVDSDGATNSTTANLTVNKAVDYPPVANAGPNQVITLPQNSITLFGNQSTDDHGITSYEWSLSPSSKGKVVEMQGVRTPTLQLSAMQEGDYTYQLTVTDTIGQQATAQVTVIVQPENNKPPQADAGPDKELTLPVDSTTLDGSKSSDDQKIISYLWEKTQGPDGVQLENANSSVATVTGLQVGTYVFTLTVKDERNLQSQSSVNVIVKEEINKPPIAKITGNVVITLPTSTAELDGSKSSDDKGIVSYLWTRDEGSPAAGEVLNHSDHHPILFLSNLVEGTYTFHLKVTDAKGESDTDRTTVEVKPDPRKNNLVEIILDINVSQLTERLKGMFIRQIGVLLGVLDSDIIVQKIQPYT-EQSTKMVFFVQN-EPPHQIFKGHEVAAMLKSELRKQKADFLIFRALEVNTVTCQLNCSDHGHCDSFTKRCICDPFWMENFIKVQLRDGDSNCEWSVLYVIIATFVIVVALGILSWTVICCC 955 The following BLAST results are available for this feature:
BLAST of TCONS_00017225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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