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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017243 ID=TCONS_00017243|Name=TCONS_00017243|organism=Clytia hemisphaerica|type=transcript|length=605bp
CTTAACAAAGCTAAAGGAAGGAGAGCTCATGTTACAGCATCATAATATTA
AAACACAGATTTCGCATATATACTTAACaagtcagcaaaaatttctcaat
GAAATCAAATACACTATAAAAACAGAAATACGAACTGACACTAGTCAGAG
ATTCTCTCAGAAAACACACAGACAGGATTTGTGGATTCGAAAATGGGTTT
ACTTCATTTAGTAACAGTTGCTGCACTGGCTCAACTCGGCCTAGCGGCAC
AACCTTCAGATCCAACACCATGGCCCGCACAATTCACACAAACTTTCAAA
GAAACCTTCTATTACCCAGTAATTGGCACCCATACAACGACAGGGACCTA
CTACTACGATTTCAAGAACTTGCGATACCGTATTGACCGCGCGAACGGAC
GTTACGACCGCTACTGTGGATTTAATGGTGTTCGCGCTTTCCAAAATACT
CCTTGCTCTCAACTGGTCATCAAAGGACAAAGATGGTTGATCTACCCAGA
GAAGAAAGACTGCTGCATGTGCTGCACTTCAGCTCAAGGGTGTGGGATTT
TGAAACCAGATTGGACCAAAGGAGCTCTCTTCGTCAATTCTGATAATGGA
ATGTA Run BLAST on NCBI transcript from alignment at sc0000261:312512..315502+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017243 ID=TCONS_00017243|Name=TCONS_00017243|organism=Clytia hemisphaerica|type=transcript|length=2991bp|location=Sequence derived from alignment at sc0000261:312512..315502+ (Clytia hemisphaerica)
CTTAACAAAGCTAAAGGAAGGAGAGCTCATGTTACAGCATCATAATATTA
AAACACAGATTTCGCATATATACTTAACaagtcagcaaaaatttctcaat
GAAATCAAATACACTATAAAAACAGAAATACGAACTGACACTAGTCAGAG
ATTCTCTCAGAAAACACACAGACAGGATTTGTGGATTCGAAAATGGGTTT
ACTTCATTTAGTAACAGTTGCTGCACTGGCTCAACTCGGCCTAGCGGCAC
AACCTTCAGATCCAACACCATGGCCCGCACAATTCACACAAACTTTCAAA
GAAACCTTCTATTACCCAGTAATTGGCACCCATACAACGACAGGGACCTA
CTACTACGATTTCAAGAACTTGCGATACCGTATTGACCGCGCGAACGGAC
GTTACGACCGCTACTGTGGATTTAATGGTGTTCGCGCTTTCCAAAATACT
CCTTGCTCTCAACTGGTCATCAAAGGACAAAGATGGTTGATCTACCCAGA
GAAGAAAGACTGCTGCATGTGAGTATCCTATAAGATATATGAATTAGAGT
TTCTGTCCAACTACACTCAgtagatttgggtggcagagcaagtgtatgca
tttcgtccttattgtGACTTGTGCGTATGCACCCTGAATAAAATATACGC
ACAATTGACATAGGATGGCTGATAAATTGTAGATTTACAGGCCGAAAGAA
TGAAATTGAATTGGGATTTTGTCACCGGCTGTATGCTGTTAGTTGGACAG
TAGTCCAAGGGTCTGAGGAATTTATAGCTTACGGCTTCTGCGTGCCACTC
CTGTCTCTTCTTGGCTCAGGCTCTTTCAGAATTTACCCTCATAAGTAATA
CATTTGCTAATGGCTGTAAAATCGTTTTTCCTTAATCTTATTGAGATTTC
CGACATTTGTTACTCCCGTCAGAATACAGAACAAGAAAAAAtcgatttcc
aaaaaaattcacgTAAAACTCACGGTggtctttttttatcaatttcaagC
AGACAGATATATGTATCCCCTAACTCCCAATGCTTCTTAAAACTCATTGT
TTTCTTACTCTTGTAGGTGCTGCACTGCAGCTCAAGGGTGCGGTATTTTG
AAACCGGATTGGACCAAAGGAGCTCTCTTCGTCAATTCTGACAATGGAAT
GTATAAATGGAACCAAAAAGGCTTACAGGATAATTTCTACATTGAACGCC
AAAGCGATCGCCGAATGGTCCGAATCAATCAAGTTCCCAACGACATCCAA
GATTACGATCCAGACTCATTTAAACCAACTGTCGACCCAAAAGTTTTCGA
GCTCCCTTCATATTGTCAGCAAAAAGCATGCTCGTACGCTTCCACTTGTC
GCGCGGTCGGCCGCCGTTAAACCGCCTAATGTGACTCGTTTGGAGCAGCA
TTTATTCCAGGCTTTACATTAAACgattttttaaaatgtttattatTCAC
ATGTTACATACTCTGAAATATATTTCATTAGTTTTAAAactgaatttgat
tttttttttcatctgtaTCAGTAACTCTttcaaggttttatttttacata
agtgttcccgtttcataccagacatatatttcatataaggacagtgtctg
cctattgttatctTGCTCCATATCCGTATCATtgaatccaatgtgaaaaa
gcttgtaaattaataTTGATGAGTAAGGGAACGAtaccactcttatttaa
aaacaaaacctttaagacaACAGACAACCTTAAGCGATGTCCATTCTTTT
CAGCAAccattttttgatttcaattttgattggGAAAATTTGGCTTAATG
AACCTAGGCCCTAGATGTTTAGCTGTTTTAGTTATGAGATAATTATTTCg
tgttgaaattttcatttaacCTTTCATTTAGATAAATAGAGTCACAGTGG
TAAAAAGTATTAGACAAATTCGGGCGAAATATCgagagataaaaaaaagt
tattaggcacccagctggcacacaacgttgcttcaacgttcatctaacgt
tatatggacgttgtgaacgttagatgaacgttgagacAACGTTGTGTTCC
AGCTGGGCACGGAACAAACACCGTGTAGCAATTATAAATTAGTTCTTCAT
TTCTCGATTTGAAGTTTCCTCAAATATTAGAAAAGTTGATTTACAGTGTA
TATATTGTCATAGAAAAATCTTGACAAAAGCAAGAATTTACTAGAGCGAA
GAAACCAGGTTATTTGTGTATGCCAAAACAAGAatagagaaaagaaaaaa
gaaatcgttgtaataaaaacattagaacccaagacaaacaaacaaacagc
tATAAGCCAAAAATCACAACCTATTCCTGTATTCAAGTATCAGATACACT
GTAGGAGGAAAGAACTCGCTATGCTGTCTCTACAACTTCTCACCATTTTT
GCTTTTGCGCAACTTGGCCTTACAGATCCATCTAACCCTGCACCTTGGCC
CGTCCAGTTCACTCAAACATTCAAAGAAACCTTCTATTACCCAGTCATTG
GTACCCATACAACAACAGGGACCTACTATTACGATTTCAAGAACTTACGC
TACCGCGTGGACCGCGCGAACGGACGCTACGACCGTTACTGTGGATTCAA
CGGTGTTCGTTTTTTCGAAGACACGCCTTGTACACAGCTCACTGTAAAAG
GCGAACGGTGGCTTATCTATCCAGAAAAGAAAGAATGTTGCATGTCAGTA
TATATACTAATAAAAAGTGAAATCAactctttcaaaatttcaaagctcTA
CCAAGAAGGATTCATTTATAGGATGGTGTCTAAGAGGTTTCAAAATATAT
GAGTTTTTCTGAGCAATTTTGCGGGCAAAGGGTCAAATTTAATGCTTATC
CAAAATGAGGTAAAACCAATGACTCGAGATGTTTTCGATTGATTTTATTC
TTAGGTGCTGCACTTCAGCTCAAGGGTGTGGGATTTTGAAACCAGATTGG
ACCAAAGGAGCTCTCTTCGTCAATTCTGATAATGGAATGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017243-exon-sc0000261-1491911889:312512..313029 | TCONS_00017243-exon-sc0000261-1491911889:312512..313029 | Clytia hemisphaerica | exon |
| TCONS_00017243-exon-sc0000261-1510915933:312512..313029 | TCONS_00017243-exon-sc0000261-1510915933:312512..313029 | Clytia hemisphaerica | exon |
| TCONS_00017243-exon-sc0000261-1575043694:312512..313029 | TCONS_00017243-exon-sc0000261-1575043694:312512..313029 | Clytia hemisphaerica | exon |
| TCONS_00017243-exon-sc0000261-1491911889:315416..315502 | TCONS_00017243-exon-sc0000261-1491911889:315416..315502 | Clytia hemisphaerica | exon |
| TCONS_00017243-exon-sc0000261-1510915933:315416..315502 | TCONS_00017243-exon-sc0000261-1510915933:315416..315502 | Clytia hemisphaerica | exon |
| TCONS_00017243-exon-sc0000261-1575043694:315416..315502 | TCONS_00017243-exon-sc0000261-1575043694:315416..315502 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000261 | supercontig | sc0000261:312512..315502 + |
Blast
The following BLAST results are available for this feature:
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