TCONS_00017246 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017246
Unique NameTCONS_00017246
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length235

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017246 ID=TCONS_00017246|Name=TCONS_00017246|organism=Clytia hemisphaerica|type=transcript|length=235bp
CACCTTCCAGTATCGGCGTGTTTGAATCTGATTTTATCGTTTCGATTCCA
ATTTTTGGTACTGCATTTTACTTCCCAATCATCACCTGAATCTCCATCTC
CTCCCTCTCCAAAAGCGCTGACTTCTTGGTTATGCGTGATAGGACTTTGG
AAGAAATGACTGTGTAAATTACGTTTGGTTGCCAAATGTTGCAAGCGAAT
CTTATCTCCACATTTTATGACGGTTCTAAGGACAC
Run BLAST on NCBI

transcript from alignment at sc0000261:14831..15401-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017246 ID=TCONS_00017246|Name=TCONS_00017246|organism=Clytia hemisphaerica|type=transcript|length=571bp|location=Sequence derived from alignment at sc0000261:14831..15401- (Clytia hemisphaerica)
CACCTTCCAGTATCGGCGTGTTTGAATCTGATTTTATCGTTTCGATTCCA
ATTTTTGGTACTGCATTTTACTTCCCAATCATCACCTGGTCAAAGGCAAC
AAATGCATTATTTTGTTAAAATAAACTTCAGCACTTCAACCTCGTTCCCG
TGTACCCCAAACTTTAAAGATGTCACGGATAGGGCTATCAGTAAGCATCA
ACAAGCCAGGAACAAGGGTAAAGCCACTCTACTTATATGCTAGACTCATG
AGTGATGCCCTGCAAAACCAAACATTGTAATCAGGATTTTCAAGGAAATT
ACAATATTTGGTGAAAATGGGCAAAGCGTAGAAGTTGATTTGTAAAATCT
AATTCGACCTTCGTTGTTAAATTACATGAAACTGTCTATGTGGTTGAAAG
CAAGCCTAGAATCCAACTCACCAGAATCTCCATCTCCTCCCTCTCCAAAA
GCGCTGACTTCTTGGTTATGCGTGATAGGACTTTGGAAGAAATGACTGTG
TAAATTACGTTTGGTTGCCAAATGTTGCAAGCGAATCTTATCTCCACATT
TTATGACGGTTCTAAGGACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009648XLOC_009648Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017246-exon-sc0000261-1575043694:15314..15401TCONS_00017246-exon-sc0000261-1575043694:15314..15401Clytia hemisphaericaexon
TCONS_00017246-exon-sc0000261-1575043694:14831..14977TCONS_00017246-exon-sc0000261-1575043694:14831..14977Clytia hemisphaericaexon
TCONS_00017246-exon-sc0000261-1510915933:15314..15401TCONS_00017246-exon-sc0000261-1510915933:15314..15401Clytia hemisphaericaexon
TCONS_00017246-exon-sc0000261-1510915933:14831..14977TCONS_00017246-exon-sc0000261-1510915933:14831..14977Clytia hemisphaericaexon
TCONS_00017246-exon-sc0000261-1491911889:15314..15401TCONS_00017246-exon-sc0000261-1491911889:15314..15401Clytia hemisphaericaexon
TCONS_00017246-exon-sc0000261-1491911889:14831..14977TCONS_00017246-exon-sc0000261-1491911889:14831..14977Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000261supercontigsc0000261:14831..15401 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
81.0115	110.735	84.4701	81.7344	80.1908	58.787	157.914	152.531	98.3621	79.5725	60.1816	79.7893	58.2568	52.692	50.4164	54.4696	89.3159	71.4338	35.3579	21.791	48.6862	37.0593	49.4475	54.4814	75.3569	89.6723	37.5907	36.4995	40.9793	32.4854
Blast
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BLAST of TCONS_00017246 vs. Swiss-Prot (Human)
Match: SDF2 (Stromal cell-derived factor 2 OS=Homo sapiens GN=SDF2 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.841e-19
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = -3 
Query:    9 TVIKCGDKIRLQHLATKRNLHSHFFQSPITHNQEVSAFXXXXXXXXXXDWEVKCSTKNWNRNDKIRFKHADT 224
            T IKCG  IRL H+ T RNLHSH F SP++ NQEVSAFGE G+GD  DDW V C+   W R+ ++RFKH+ T
Sbjct:   84 TPIKCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSST 155
The following BLAST results are available for this feature:
BLAST of TCONS_00017246 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SDF24.841e-1959.72Stromal cell-derived factor 2 OS=Homo sapiens GN=S... [more]
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