TCONS_00017274 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017274
Unique NameTCONS_00017274
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2193

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017274 ID=TCONS_00017274|Name=TCONS_00017274|organism=Clytia hemisphaerica|type=transcript|length=2193bp
AGAATTCAGtaaagttttttagaaaaaaacaaaaatgatgtTGAAAATAT
CGGTTGCTTTGTTCGCGCTGGTTTCTTTCGCAGCATGTGCATGGCCTGGA
GGTCAACGGGTAATCGATAGTAACGCACGTGGCTTTACAGTTATTCACGA
TGAAGCTGATAACTCCAATAACGAAACACTATATGCATTCTCGTACGAAA
TTGCCAACAAACCAAGCTATTTCTACTCTCAAGGTTTTCTCAGTACAGGC
CATTCTAGCCCTAATTTAACGCTCAGTGGGTTAAGAATCAATGAAATCAT
ATCCTTCAAAGTATGCAACTACCAACTTGGCACAACAATCACCAATGATT
TGTTTTCATCGGCTACAGATATCAGTGTTAAACGTTCTGAACTGGCAGGA
AATACTTTGGTACCAGGAATTCCATTAAATCTTAAAGTCATTGCTGGTAG
CTCAAATAAATTTCACAGTGCAACTGTCACCTGGGATAACCCACAAAACA
TCCAAGACTCAACCAATGAAACAGATAAATCTATTCAATATAAATTCGAA
ATATGCAGATATAACAGATTCACTGAAATGAAATCTAAATGTGAAATTGA
AGCTGACATTTTGAGAAACAAAGCTTCAACAACGCAATCGACCGAACAAA
CAAAATCCAGCAAGCTGTATGATTTTAATTTCCACCCTTCAAAATCAGAT
GAGCTCGTCTACCGTATTACTGGCATTGCACTGAATGGTACTGCAGGTCC
AACAGCTGAAGCTATTGCCAGGCTGAACTCCACCTTGGCACCAAAAGCTC
CATATAATGTTACTGTTGCTTTGCATACTGAAATTTACGCTGATACGCTC
ACGTTGTCATGGTTATCGGCCGATCAAGGTGTCAATTACGTCAGATACAA
CATTAAAGGCAACAGTACAACAATGATGAAATCAGGATCCTCACCGATGG
TTATCAGTGGTTTGCGAAACAGTACAGAATATGAATTCCAAGTTGGCGTT
TATACTGAACGAAATGGTGGCAGTNaaaaatgaaaaatggtaacccaaag
gttccagatgttaaaattttcccgaccttcagagctttagcgtgtcggaa
gaaaatttctacatcgagtaccagatagcagtcgggctggaacggtatca
cgtgGGGAaatgagcgtaggagttaggtaagcgtaggatctaggaagaaa
ttttgtcggcggcaagggctgaaagcagcagcctctcaccaacttttgct
tgtTCTCCTACGTAGCTcttattctagcaaacgcccgccgcctttatgtt
cctgCCCACTTGAcatagtttgctagtctagcgCAAGACAAGCGCAATCA
CTCGATTACTACAACCTAGAAAgacaataaattttcaaattaagatATGC
GGTCCAAATATATCAATGAAGATctaatgattttgttttttcaacCCATA
GAACCGAGACCAACTCCAAAACCAGGAAACAATGGAACGATGCTGACATC
ATCACTTTTCTTATTACTTTCATCTCTATTTGCTGTCATCAAATTCTTGT
AAAGAGAATTGTAACAGAATACTCCCAGAATGCATTATAGTCACAAGAAT
CCAACTTTATTTACAACACACTTGAAATCTTTGGCAAACTCACATCACCG
TCATTCANGGGGGGGGGAAAATAGGGTACGCGGGACATGCCGCtgatcag
ggtcccttttttaggctctgaagatatctgacagggtccaaaatctacta
attttcaagatgtgcatctgacagggtccacttttggttatttggacaat
ttttcagggaaaaaaatgagaaaatttttcagtttttcgtctacttttag
tcattttgccACTTGTTAGGGTGGAAAttgactttcaattttttgtccTG
ACAGTGTCCATGTTgtccgtcaaggtcagtgcccccctcCCGGGATGGGT
AGGAGCAAGGTTATATTATAGATATATGTATCGTATAGATAAGCTATTTG
TAATTTAAGAAAGAAACTTATACTTTAGATTTTATTACGAAAATATACAC
ttgatttagaaaaataattaaaatacgatTAGAAGGTTGAGTGTTACGAA
AATTTGAACTTTGAAGACTGGTTTCAGGCTGGCGAAATTTCCATCAGTTT
CTGCAGCTCCGGCTGCCATTTTGAGACAATTGACGGTTACCAG
Run BLAST on NCBI

protein sequence of TCONS_00017274-protein

>TCONS_00017274-protein ID=TCONS_00017274-protein|Name=TCONS_00017274-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
MMLKISVALFALVSFAACAWPGGQRVIDSNARGFTVIHDEADNSNNETLY
AFSYEIANKPSYFYSQGFLSTGHSSPNLTLSGLRINEIISFKVCNYQLGT
TITNDLFSSATDISVKRSELAGNTLVPGIPLNLKVIAGSSNKFHSATVTW
DNPQNIQDSTNETDKSIQYKFEICRYNRFTEMKSKCEIEADILRNKASTT
QSTEQTKSSKLYDFNFHPSKSDELVYRITGIALNGTAGPTAEAIARLNST
LAPKAPYNVTVALHTEIYADTLTLSWLSADQGVNYVRYNIKGNSTTMMKS
GSSPMVISGLRNSTEYEFQVGVYTERNGGSXK
Run BLAST on NCBI

transcript from alignment at sc0000264:82505..89382+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017274 ID=TCONS_00017274|Name=TCONS_00017274|organism=Clytia hemisphaerica|type=transcript|length=6878bp|location=Sequence derived from alignment at sc0000264:82505..89382+ (Clytia hemisphaerica)
AGAATTCAGtaaagttttttagaaaaaaacaaaaatgatgtTGAAAATAT
CGGTTGCTTTGTTCGCGCTGGTTTCTTTCGCAGGTAAACATACGAGTAAA
TTCTATCCACCTTTTTTTTGGGTAATTCTCTGCTTGATATTCTGCTAAAA
CCCCGAGATAGTACTGGGGGCTTCAGAGAGTCTCGTATTGACCGGTATTT
TGGTACAcgcttctttttataagaatggtgtaaatccatttcatcatgga
tattcttaacttttttgggaAAATCATCCTATAATATTCTTACAGCATTC
TTAGGTTATGATCCTTATCCAGACACTAGATTTAACATTTAGTACATACG
TCTCAAGCATAAAATGGCATTTTTGTGAAAGGGACGAGCCTTACTTGGGG
TAATTGACAATTTATAATCGAAAATGCTCTAAAGGCATTCTTAGCTTGAG
TAGCCAAATTCCATGACGGTGATATTCTTAGCATTAATCTTATGTTATTC
TTATTCTTATCATTATTCTTAATGTTTTGGACATTTTTATCATGGACATT
CTTGTAAAGCGTATTCTTATAAAAAAAGCGTGTACTTGAAGGACAGCTGT
ATTGAAATATCGAAGCATTTTTGACCGATATTTGAGAAATCTTAAGCCCA
CGCACCGGTATTTCGGTATTTAGTAACTTACGAAGCCCCCCCCTCTCACA
ACATGGTCATTGTTTACATCTAAGTTACTTTTGAACTTCAAAATATTATT
AGCTAAAATTATTCTCTTCTACGTCATTTTTTTTCTTTCCTGGATATTGG
GATATCGTGAAAAGAAGAGAAGGCTGCTCAATTAAACAAACCATAGCTTT
GATAAAAACCATCTGCTGATAAATTGCTAATTCTCCAGCAAAGATTGTTG
ATGTTTGCAAATTTCTAATGAGAAAGAAACTGATTTGATTATAAAAACAG
CCCTGTATCATTGATCCGGTGAGAATATTTTTAACAATGGTAAAAACGAA
AGCACTTTAATACCAAATTGGCGATGGAAAATGTCTTGTGGGATTTTATA
CTGTCTGCAGCTAAAAATTCTAATACGTTAGAGAGCAGTGCTTATGGGAT
TTAGAGATAGGATAAAACTTCAGTATCGTTTTCCAATAGGGTTGAAAATT
TCaagatattttattttcatcaggGACGAGTTTATAGCCGACTTTCCAGA
GCGAAATAGTTAAACAAAACACAAGTAAATCAATCGTTTAAAGTGGTAAC
CCGGGGGTACTTAGGTAAATGGATAGTACGGTATGTTCAGCCCTTAAGGG
TAcgttttttggatttccaaagtcccgctaagggtcggaaaaaaatcaga
aaatctaatttcagtcccactaagggtcggagaaataggaaaatttcaac
tttttacccccggaaagatcgaaatttggtcaaaattggtcaaatttgtc
ccaataagggtcgtaaaaaattcacaaaagtttcctttgttttctccttt
tgatTACCAGTAAGGGCCCAAGAGTCGAAAGTTGGACGGCACCCTCCCca
tcagctcgcaaccctagtatcccCCCCGGGAGTGATAAGCATCGCTTCCA
CCCTAAATATCAGTTTTTTCGAATACACATTTATAATCTATCTTGatttt
atgttttatgtttCAGCATGTGCATGGCCTGGAGGTCAACGGGTAATCGA
TAGTAACGCACGTGGCTTTACAGTTATTCACGATGAAGCTGATAACTCCA
ATAACGAAACACTATATGCATTCTCGTACGAAATTGCCAACAAACCAAGC
TATTTCTACTCTCAAGGTTTTCTCAGTACAGGCCATTCTAGCCCTAATTT
AACGCTCAGTGGGTTAAGAATCAATGAAATCATATCCTTCAAAGTATGCA
ACTACCAACTTGGCACAACAATCACCAATGATTTGTTTTCATCGGCTACA
GATATCAGTGTTAAACGTTCTGAACTGGCAGGAAATACTTGTAAGTCATT
TTTTGTCCGAATATGTCCGAAGTCAGTATCATACAGAGcgatcaaaaaga
aaaacttttccaTGTATTTTGTATATTAAAAAGTACCCTAtcgggggaaa
aaatgtcgggggaaagtgatgaaaattttgaggaggtgacgaaatttttt
tcccgattatttttatccccgaccaaaatatTTACCCGATTTGTTTTTCC
CAACCAAAAtgcaaatccaaattttttacgtCTCTATTAACCGAAatgaa
attagtgctttaaacgtcgaattacaagatctattttcgagctagtgaag
gaaaccatttcatttggacaatttaatCGGGAGAAGtaactaaattgtaa
atttggtaggggaaaagtgacgaattttaaattttggtcgtggaaaagtg
acgaaaatgcctctagatGACGAAATGTTTCCCTAAATCCTACATGCCAT
ATACGCCATATAATACGcttttctataagaaaattGTGCAAATCGTATAT
AGAACTAAACCTGAGTAGGCAAAGGTTATTTTTCATGATGAATCAAAGGT
GTACTACAAAGTGTTCTCGACAGTATGGTCGAGGAGACATGGCTTCATCT
AAAACTTTGGGACGTTAAATTCGAAAGATTTAAACTAATTACAATTGATT
CCTAAGACCTTCACTCTATACAAAAGTACTCTATTCTCATAAATAGAGGC
TGGAGATCACAAATACTTGCAAACCTTTCCAGCTGACACTAAAGGTCAAA
ACCTTCTTTTTCAGTGGTACCGGGAATTCCATTAAATCTTAAAGTCATTG
CTGGTAGCTCAAATAAATTTCACAGTGCAACTGTCACCTGGGATAACCCA
CAAAACATCCAAGACTCAACCAATGAAACAGATAAATCTATTCAATATAA
ATTCGAAATATGCAGATATAACAGATTCACtcaaatgaaatcaaaatgtG
AAATTGAAGCTGACATTTTGAGAAACAAAGCTTCAACAACGCAATCGACC
GAACAAACAAAATCCAGCAAGCTGTATGATTTTAATTTCCACCCTTCAAA
ATCAGATGAGCTCGTCTACCGTATTACTGGCATTGCACTGAATGGTACTG
CAGGTCCAACAGCTGAAGCTATTGCCAGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTACGAAATTGCCAACAAACCAAGCTAT
TTCTACTCTCAAGGTTTTCTCAGTACAGGCCATTCTAGCCCTAATTTAAC
GCTCAGTGGGTTAAGAATCAATGAAATCATATCCTTCAAAGTATGCAACT
ACCAACTTGGCACAACAATCACCAATGATTTGTTTTCATCGGCTACAGAT
ATCAGTGTTAAACGTTCTGAACTGGCAGGAAATACTTGTAAGTCATTTTT
TGTCCGAATATGTCCGAAGTCAGTATCATACAGAGcgatcaaaaagaaaa
acttttccaTGTATTTTGTATATTAAAAAGTACCCTAtcgggggaaaaaa
tgtcgggggaaagtgatgaaaattttgaggaggtgacgaaatttttttcc
cgattatttttatccccgaccaaaatatTTACCCGATTTGTTTTTCCCAA
CCAAAAtgcaaatccaaattttttacgtCTCTATTAACCGAAatgaaatt
agtgctttaaacgtcgaattacaagatctattttcgagctagtgaaggaa
accatttcatttggacaatttaatCGGGAGAAGtaactaaattgtaaatt
tggtcggggaaaagtgacgaattttaaattttggtcgtggaaaagtgacg
aaaatgcctctaaatttcgtatttttcccTAAATCCCACATGCCATATAC
GCCatataatacacttttttataagaaaattgtgCAAATCGTATATAGAA
CTAAAACTAGAACTCCTGAGTAGGCAAAGGTTATTTTTCATGATGAATCA
AAGGTGTACTACAAAGTGTTCTCGACAGTATGGTCGAGGAGACATGGCTT
CATCTAAAACTTTGAGACGTTAAATTCGAAAGATTTAAACTAATTATAAT
TGATTCCTAAGACCTTCACTCTATACAAAAGTACTCTATTCTCATAAATA
GAGGCTGGAGATCATCAAATACTTTCAAACCTTTCCAGCTGGCACTAAAG
GTCAAACCCTTCTTTTTCAGTGGTACCAGGAATTCCATTAAATCTTAAAG
TCATTGCTGGTAGCTCAAATAAATTTCACAGTGCAACTGTCACCTGGGAT
AACCCACAAAACATCCAAGACTCAACCAATGAAACAGATAAATCTATTCA
ATATAAATTCGAAATATGCAGATATAACAGATTCACTGAAATGAAATCTA
AATGTGAAATTGAAGCTGACATTTTGAGAAACAAAGCTTCAACAACGCAA
TCGACCGAACAAACAAAATCCAGCAAGCTGTATGATTTTAATTTCCACCC
TTCAAAATCAGATGAGCTCGTCTACCGTATTACTGGCATTGCACTGAATG
GTACTGCAGGTCCAACAGCTGAAGCTATTGCCAGGCTGAACTCCACCTTG
GGTAAGTATGATCTTGATATTTTCAATAAgctatatttcaattttattga
attttattcgtgtttttttataagaacgaacgGAATATAAGCATATAATG
TTTCGATGGCAAACCTACGGAACTTTTACTTTCAGGTAGGCATTTGCGTT
GTTTTATATGTTCGAACAAAAATATGTGCAATCAATTTCAAAACATAATC
AAagtatttttaacaatttccaGCACCAAAAGCTCCATATAATGTTACTG
TTGCTTTGCATACTGAAATTTACGCTGATACGCTCACGTTGTCATGGTTA
TCGGCCGATCAAGGTGTCAATTACGTCAGATACAACATTAAAGGCAACAG
TACAACAATGATGAAATCAGGATCCTCACCGATGGTTATCAGTGGTTTGC
GAAACAGTACAGAATATGAATTCCAAGTTGGCGTTTATACTGAACGAAAT
GGTGGCAGTNaaaaatgaaaaatggtaacccaaaggttccagatgttaaa
attttcccgaccttcagagctttagcgtgtcggaagaaaatttctacatc
gagtaccagatagcagtcgggctggaacggtatcacgtgGGGAaatgagc
gtaggagttaggtaagcgtaggatctaggaagaaattttgtcggcggcaa
gggctgaaagcagcagcctctcaccaacttttgcttgtTCTCCTACGTAG
CTcttattctagcaaacgcccgccgcctttatgttcctgCCCACTTGAca
tagtttgctagtctagcgCAAGACAAGCGCAATCACTCGATTACTACAAC
CTAGAAAgacaataaattttcaaattaagatATGCGGTCCAAATATATCA
ATGAAGATctaatgattttgttttttcaacCCATAGAACCGAGACCAACT
CCAAAACCAGGAAACAATGGAACGATGCTGACATCATCACTTTTCTTATT
ACTTTCATCTCTATTTGCTGTCATCAAATTCTTGTAAAGAGAATTGTAAC
AGAATACTCCCAGAATGCATTATAGTCACAAGAATCCAACTTTATTTACA
ACACACTTGAAATCTTTGGCAAACTCACATCACCGTCATTCANGGGGGGG
GGAAAATAGGGTACGCGGGACATGCCGCtgatcagggtcccttttttagg
ctctgaagatatctgacagggtccaaaatctactaattttcaagatgtgc
atctgacagggtccacttttggttatttggacaatttttcagggaaaaaa
atgagaaaatttttcagtttttcgtctacttttagtcattttgccACTTG
TTAGGGTGGAAAttgactttcaattttttgtccTGACAGTGTCCATGTTg
tccgtcaaggtcagtgcccccctcCCGGGATGGGTAGGAGCAAGGTTATA
TTATAGATATATGTATCGTATAGATAAGCTATTTGTAATTTAAGAAAGAA
ACTTATACTTTAGATTTTATTACGAAAATATACACttgatttagaaaaat
aattaaaatacgatTAGAAGGTTGAGTGTTACGAAAATTTGAACTTTGAA
GACTGGTTTCAGGCTGGCGAAATTTCCATCAGTTTCTGCAGCTCCGGCTG
CCATTTTGAGACAATTGACGGTTACCAG

Coding sequence (CDS) from alignment at sc0000264:82505..89382+

>TCONS_00017274 ID=TCONS_00017274|Name=TCONS_00017274|organism=Clytia hemisphaerica|type=CDS|length=4995bp|location=Sequence derived from alignment at sc0000264:82505..89382+ (Clytia hemisphaerica)
atgatgtTGAAAATATCGGTTGCTTTGTTCGCGCTGGTTTCTTTCGCAGC
ATGTGCATGGCCTGGAGGTCAACGGGTAATCGATAGTAACGCACGTGGCT
TTACAGTTATTCACGATGAAGCTGATAACTCCAATAACGAAACACTATAT
GCATTCTCGTACGAAATTGCCAACAAACCAAGCTATTTCTACTCTCAAGG
TTTTCTCAGTACAGGCCATTCTAGCCCTAATTTAACGCTCAGTGGGTTAA
GAATCAATGAAATCATATCCTTCAAAGTATGCAACTACCAACTTGGCACA
ACAATCACCAATGATTTGTTTTCATCGGCTACAGATATCAGTGTTAAACG
TTCTGAACTGGCAGGAAATACTTTGGTACCAGGAATTCCATTAAATCTTA
AAGTCATTGCTGGTAGCTCAAATAAATTTCACAGTGCAACTGTCACCTGG
GATAACCCACAAAACATCCAAGACTCAACCAATGAAACAGATAAATCTAT
TCAATATAAATTCGAAATATGCAGATATAACAGATTCACTGAAATGAAAT
CTAAATGTGAAATTGAAGCTGACATTTTGAGAAACAAAGCTTCAACAACG
CAATCGACCGAACAAACAAAATCCAGCAAGCTGTATGATTTTAATTTCCA
CCCTTCAAAATCAGATGAGCTCGTCTACCGTATTACTGGCATTGCACTGA
ATGGTACTGCAGGTCCAACAGCTGAAGCTATTGCCAGGCTGAACTCCACC
TTGGCACCAAAAGCTCCATATAATGTTACTGTTGCTTTGCATACTGAAAT
TTACGCTGATACGCTCACGTTGTCATGGTTATCGGCCGATCAAGGTGTCA
ATTACGTCAGATACAACATTAAAGGCAACAGTACAACAATGATGAAATCA
GGATCCTCACCGATGGTTATCAGTGGTTTGCGAAACAGTACAGAATATGA
ATTCCAAGTTGGCGTTTATACTGAACGAAATGGTGGCAGTNaaaaatgaa
tgatgtTGAAAATATCGGTTGCTTTGTTCGCGCTGGTTTCTTTCGCAGCA
TGTGCATGGCCTGGAGGTCAACGGGTAATCGATAGTAACGCACGTGGCTT
TACAGTTATTCACGATGAAGCTGATAACTCCAATAACGAAACACTATATG
CATTCTCGTACGAAATTGCCAACAAACCAAGCTATTTCTACTCTCAAGGT
TTTCTCAGTACAGGCCATTCTAGCCCTAATTTAACGCTCAGTGGGTTAAG
AATCAATGAAATCATATCCTTCAAAGTATGCAACTACCAACTTGGCACAA
CAATCACCAATGATTTGTTTTCATCGGCTACAGATATCAGTGTTAAACGT
TCTGAACTGGCAGGAAATACTTTGGTACCAGGAATTCCATTAAATCTTAA
AGTCATTGCTGGTAGCTCAAATAAATTTCACAGTGCAACTGTCACCTGGG
ATAACCCACAAAACATCCAAGACTCAACCAATGAAACAGATAAATCTATT
CAATATAAATTCGAAATATGCAGATATAACAGATTCACTGAAATGAAATC
TAAATGTGAAATTGAAGCTGACATTTTGAGAAACAAAGCTTCAACAACGC
AATCGACCGAACAAACAAAATCCAGCAAGCTGTATGATTTTAATTTCCAC
CCTTCAAAATCAGATGAGCTCGTCTACCGTATTACTGGCATTGCACTGAA
TGGTACTGCAGGTCCAACAGCTGAAGCTATTGCCAGGCTGAACTCCACCT
TGGCACCAAAAGCTCCATATAATGTTACTGTTGCTTTGCATACTGAAATT
TACGCTGATACGCTCACGTTGTCATGGTTATCGGCCGATCAAGGTGTCAA
TTACGTCAGATACAACATTAAAGGCAACAGTACAACAATGATGAAATCAG
GATCCTCACCGATGGTTATCAGTGGTTTGCGAAACAGTACAGAATATGAA
TTCCAAGTTGGCGTTTATACTGAACGAAATGGTGGCAGTNaaaaatgaat
gatgtTGAAAATATCGGTTGCTTTGTTCGCGCTGGTTTCTTTCGCAGCAT
GTGCATGGCCTGGAGGTCAACGGGTAATCGATAGTAACGCACGTGGCTTT
ACAGTTATTCACGATGAAGCTGATAACTCCAATAACGAAACACTATATGC
ATTCTCGTACGAAATTGCCAACAAACCAAGCTATTTCTACTCTCAAGGTT
TTCTCAGTACAGGCCATTCTAGCCCTAATTTAACGCTCAGTGGGTTAAGA
ATCAATGAAATCATATCCTTCAAAGTATGCAACTACCAACTTGGCACAAC
AATCACCAATGATTTGTTTTCATCGGCTACAGATATCAGTGTTAAACGTT
CTGAACTGGCAGGAAATACTTTGGTACCAGGAATTCCATTAAATCTTAAA
GTCATTGCTGGTAGCTCAAATAAATTTCACAGTGCAACTGTCACCTGGGA
TAACCCACAAAACATCCAAGACTCAACCAATGAAACAGATAAATCTATTC
AATATAAATTCGAAATATGCAGATATAACAGATTCACTGAAATGAAATCT
AAATGTGAAATTGAAGCTGACATTTTGAGAAACAAAGCTTCAACAACGCA
ATCGACCGAACAAACAAAATCCAGCAAGCTGTATGATTTTAATTTCCACC
CTTCAAAATCAGATGAGCTCGTCTACCGTATTACTGGCATTGCACTGAAT
GGTACTGCAGGTCCAACAGCTGAAGCTATTGCCAGGCTGAACTCCACCTT
GGCACCAAAAGCTCCATATAATGTTACTGTTGCTTTGCATACTGAAATTT
ACGCTGATACGCTCACGTTGTCATGGTTATCGGCCGATCAAGGTGTCAAT
TACGTCAGATACAACATTAAAGGCAACAGTACAACAATGATGAAATCAGG
ATCCTCACCGATGGTTATCAGTGGTTTGCGAAACAGTACAGAATATGAAT
TCCAAGTTGGCGTTTATACTGAACGAAATGGTGGCAGTNaaaaatgaatg
atgtTGAAAATATCGGTTGCTTTGTTCGCGCTGGTTTCTTTCGCAGCATG
TGCATGGCCTGGAGGTCAACGGGTAATCGATAGTAACGCACGTGGCTTTA
CAGTTATTCACGATGAAGCTGATAACTCCAATAACGAAACACTATATGCA
TTCTCGTACGAAATTGCCAACAAACCAAGCTATTTCTACTCTCAAGGTTT
TCTCAGTACAGGCCATTCTAGCCCTAATTTAACGCTCAGTGGGTTAAGAA
TCAATGAAATCATATCCTTCAAAGTATGCAACTACCAACTTGGCACAACA
ATCACCAATGATTTGTTTTCATCGGCTACAGATATCAGTGTTAAACGTTC
TGAACTGGCAGGAAATACTTTGGTACCAGGAATTCCATTAAATCTTAAAG
TCATTGCTGGTAGCTCAAATAAATTTCACAGTGCAACTGTCACCTGGGAT
AACCCACAAAACATCCAAGACTCAACCAATGAAACAGATAAATCTATTCA
ATATAAATTCGAAATATGCAGATATAACAGATTCACTGAAATGAAATCTA
AATGTGAAATTGAAGCTGACATTTTGAGAAACAAAGCTTCAACAACGCAA
TCGACCGAACAAACAAAATCCAGCAAGCTGTATGATTTTAATTTCCACCC
TTCAAAATCAGATGAGCTCGTCTACCGTATTACTGGCATTGCACTGAATG
GTACTGCAGGTCCAACAGCTGAAGCTATTGCCAGGCTGAACTCCACCTTG
GCACCAAAAGCTCCATATAATGTTACTGTTGCTTTGCATACTGAAATTTA
CGCTGATACGCTCACGTTGTCATGGTTATCGGCCGATCAAGGTGTCAATT
ACGTCAGATACAACATTAAAGGCAACAGTACAACAATGATGAAATCAGGA
TCCTCACCGATGGTTATCAGTGGTTTGCGAAACAGTACAGAATATGAATT
CCAAGTTGGCGTTTATACTGAACGAAATGGTGGCAGTNaaaaatgaatga
tgtTGAAAATATCGGTTGCTTTGTTCGCGCTGGTTTCTTTCGCAGCATGT
GCATGGCCTGGAGGTCAACGGGTAATCGATAGTAACGCACGTGGCTTTAC
AGTTATTCACGATGAAGCTGATAACTCCAATAACGAAACACTATATGCAT
TCTCGTACGAAATTGCCAACAAACCAAGCTATTTCTACTCTCAAGGTTTT
CTCAGTACAGGCCATTCTAGCCCTAATTTAACGCTCAGTGGGTTAAGAAT
CAATGAAATCATATCCTTCAAAGTATGCAACTACCAACTTGGCACAACAA
TCACCAATGATTTGTTTTCATCGGCTACAGATATCAGTGTTAAACGTTCT
GAACTGGCAGGAAATACTTTGGTACCAGGAATTCCATTAAATCTTAAAGT
CATTGCTGGTAGCTCAAATAAATTTCACAGTGCAACTGTCACCTGGGATA
ACCCACAAAACATCCAAGACTCAACCAATGAAACAGATAAATCTATTCAA
TATAAATTCGAAATATGCAGATATAACAGATTCACTGAAATGAAATCTAA
ATGTGAAATTGAAGCTGACATTTTGAGAAACAAAGCTTCAACAACGCAAT
CGACCGAACAAACAAAATCCAGCAAGCTGTATGATTTTAATTTCCACCCT
TCAAAATCAGATGAGCTCGTCTACCGTATTACTGGCATTGCACTGAATGG
TACTGCAGGTCCAACAGCTGAAGCTATTGCCAGGCTGAACTCCACCTTGG
CACCAAAAGCTCCATATAATGTTACTGTTGCTTTGCATACTGAAATTTAC
GCTGATACGCTCACGTTGTCATGGTTATCGGCCGATCAAGGTGTCAATTA
CGTCAGATACAACATTAAAGGCAACAGTACAACAATGATGAAATCAGGAT
CCTCACCGATGGTTATCAGTGGTTTGCGAAACAGTACAGAATATGAATTC
CAAGTTGGCGTTTATACTGAACGAAATGGTGGCAGTNaaaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009665XLOC_009665Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017274-exon-sc0000264-1491911889:82505..82587TCONS_00017274-exon-sc0000264-1491911889:82505..82587Clytia hemisphaericaexon
TCONS_00017274-exon-sc0000264-1510915933:82505..82587TCONS_00017274-exon-sc0000264-1510915933:82505..82587Clytia hemisphaericaexon
TCONS_00017274-exon-sc0000264-1575043694:82505..82587TCONS_00017274-exon-sc0000264-1575043694:82505..82587Clytia hemisphaericaexon
TCONS_00017274-exon-sc0000264-1491911889:84171..84320TCONS_00017274-exon-sc0000264-1491911889:84171..84320Clytia hemisphaericaexon
TCONS_00017274-exon-sc0000264-1510915933:84171..84320TCONS_00017274-exon-sc0000264-1510915933:84171..84320Clytia hemisphaericaexon
TCONS_00017274-exon-sc0000264-1575043694:84171..84320TCONS_00017274-exon-sc0000264-1575043694:84171..84320Clytia hemisphaericaexon
TCONS_00017274-exon-sc0000264-1491911889:86418..86591TCONS_00017274-exon-sc0000264-1491911889:86418..86591Clytia hemisphaericaexon
TCONS_00017274-exon-sc0000264-1510915933:86418..86591TCONS_00017274-exon-sc0000264-1510915933:86418..86591Clytia hemisphaericaexon
TCONS_00017274-exon-sc0000264-1575043694:86418..86591TCONS_00017274-exon-sc0000264-1575043694:86418..86591Clytia hemisphaericaexon
TCONS_00017274-exon-sc0000264-1491911889:87375..87755TCONS_00017274-exon-sc0000264-1491911889:87375..87755Clytia hemisphaericaexon
TCONS_00017274-exon-sc0000264-1510915933:87375..87755TCONS_00017274-exon-sc0000264-1510915933:87375..87755Clytia hemisphaericaexon
TCONS_00017274-exon-sc0000264-1575043694:87375..87755TCONS_00017274-exon-sc0000264-1575043694:87375..87755Clytia hemisphaericaexon
TCONS_00017274-exon-sc0000264-1491911889:87978..89382TCONS_00017274-exon-sc0000264-1491911889:87978..89382Clytia hemisphaericaexon
TCONS_00017274-exon-sc0000264-1510915933:87978..89382TCONS_00017274-exon-sc0000264-1510915933:87978..89382Clytia hemisphaericaexon
TCONS_00017274-exon-sc0000264-1575043694:87978..89382TCONS_00017274-exon-sc0000264-1575043694:87978..89382Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017274-proteinTCONS_00017274-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000264supercontigsc0000264:82505..89382 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.213159	0.788365	0.469988	0.43436	0.00764588	2.68787	2.59362	0.161194	33.1695	6.29025	33.086	8.24338	19.9222	24.3124	10.3968	16.9411	23.0301	4.98867	37.3926	36.4207	6.00641	19.6582	2.42228	1.16007	0.00578633	19.1058	3.26214	11.123	10.6091	6.46502
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003961FN3_dom
IPR013783Ig-like_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017274 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top