TCONS_00017283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017283
Unique NameTCONS_00017283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2330

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017283 ID=TCONS_00017283|Name=TCONS_00017283|organism=Clytia hemisphaerica|type=transcript|length=2330bp
cagcattttcagtggatttttcatcgattgttgccattctttttcattca
ttcgCAAGAGCGAAGAGCGATTATGGTGATGCCAAAACTTGACATCGTTT
GATCTCCAAAGTAATCATATTTTTGAAACCCAGAACTCCTTAAAAACCGC
TGTTAACATCCCAAAACTAGCCTAAAACAGttcttttcctttttgtgcTG
TATTTCACCCGgtagattttcatgattttttgcacaacgaAGCAAAAGAG
AAAACTTTGGTCACCAGTTTTGTTCAGGATTTTCTCAAATCTTATCCtta
ctttttcctgattttttgttgatttttctgttgattagccaggtaggtcc
ataaaagtatcacttgtttgttTGTTCATGAGGTGTGTTGTTTTGTATTT
CACAGCACCTAGAACAGATATTATTTCTGTCATTTAAATTGTTATTTTCT
ACTGAATTATCCTGTGAATTCGTTTTTAGAaaacaattcttaaaaaaaat
gaccACCACAGAAACCACTCAGAAGCCTACTGCTGCCTCATCTCAAAATC
CAAAAGATGCTATTGAAAGAGTTGTTATCCACCCATTGGTGCTGCTTAGT
GTTGTCGATCATTTTAACAGAATGTCAAAAGTTGGTAACCAGCGCCGTGT
AGCTGGTATTCTTTTGGGGTCAATACGTAATAAAGTTTTGGATGTGGCAA
ATAGTTTTGCCATACCATTTGATGAAGATGATAGAGATCCATCTGTATGG
TATCTTGATCATGACTATTTGGATAACATGGCTGCTATGTTCAAAAAAGT
TAATGCTAAAGAACGTGTCATCGGTTGGTACCATACTGGACCTAAACTTC
ATCCCAACGATATTCGTATCAATGAGCTTGTCAGGAGATTCAATCCAAAT
TCAGTTCTGGTCATCATCGATGCTAAACCCAAAGAACTAGGACTTCCAAC
TGAAGCATACATTGCTATTGAAGAAGTGCACGATGACGGTACGCCAACAT
CGAAAACGTTCGAACACATTCCGAGTGAAATCGGTGCCGAAGAAGCTGAA
GAAGTCGGTGTTGAACATCTCCTCAGGGACATTCGAAACGTTACAGTGGG
TACCCTCTCACAGCGTATCACTAACCAAGTGTCGTCACTTAAAGGACTAC
ACGCTCACTTGCAAGACATTCATACGTACTTAGAGCAAGTCATCAGCGGT
AAACTACCTGTCAATCATACCATCATGTACCATCTGCAAGATATTTTCAA
TCTGTTACCCAACCTCAACGTTGAGGAATTCATTAAATCAATTACGGTGA
TGACCAACGATCAAATGGTAGTTATTTATTTAGCATCCGTCGTACGTACA
GTCATTGCACTCCACAATCTCATTAATAACAAACTACAAAATAAGGACTT
AGAACGGGAAAAAGAAGAAGGCAAGAAAGATAAAGATGCAACAAAGGCTG
ATAAGgatgagaaaaaagataaaaaggaCTCCTCGAAAGATGACAAATCT
ACAACGGATAAGAAAGAATCGACCACCAAGAAATAAATGTTGAGATGTTG
TTATTTTTACTCATTAGGTTttgaattttgtgaaaaaagggATTTCAGTG
ACTTTTCCGAACTGGTATTGTTCATAGAATGTTATTCTCATATTACAACT
GATatatttaaatcatgttttggAAATGGCTAATCCACGGTAATCTCTGG
ATAGACGATTCTTTATCGTAACAAAGTTACTGACAATTTAATATTAGTAT
ACTAATCTGATATTCCAACTCACCACTTCctcaaaatccaaattttagAT
ATTCGGCCCCCAGATTTTCTTAttgatttcaaaacttttcgtTTTCAAAT
TCTACCAACAATGAAATGCCAAAAGATTTTGAAAGCACGTAAGAAGATAT
TGAACATCTCAGGATAAACTGTTAAGGTTGGAGAGACATCTTGCCTtcgt
ttgttttttaaatcaaatgcAATATTTCCACAATTATTGTAACTTATTAA
CCAACGACCAATATCGGATTGAAATGTTGAACTTCCActaatgttttgaa
agtttttaactACAGGAATTTTAAGCTTCTTCATTTTCCGTAGGAtattt
ttgttatgaatttCAACATAgatcatttttttgaatttgcaaATATGTTA
TAAACTGTTTGTATATTTTCTGTGTTTGTTTTCTCCCCTTCTTCTTTGCT
GTTTAGGGGTTTTTCTGGACATTTTGAGGATTATTTGCATTGCCTGCCCA
GTTATTATGCGTAAAATCCTGTCACTTATCAGcgcttatttttgttttgt
caaaAAGCCATCTTTTGACCAATACGATGC
Run BLAST on NCBI

transcript from alignment at sc0000264:293488..297457+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017283 ID=TCONS_00017283|Name=TCONS_00017283|organism=Clytia hemisphaerica|type=transcript|length=3970bp|location=Sequence derived from alignment at sc0000264:293488..297457+ (Clytia hemisphaerica)
cagcattttcagtggatttttcatcgattgttgccattctttttcattca
ttcgCAAGAGCGAAGAGCGATTATGGTGATGCCAAAACTTGACATCGTTT
GATCTCCAAAGTAATCATATTTTTGAAACCCAGAACTCCTTAAAAACCGC
TGTTAACATCCCAAAACTAGCCTAAAACAGttcttttcctttttgtgcTG
TATTTCACCCGgtagattttcatgattttttgcacaacgaAGCAAAAGAG
AAAACTTTGGTCACCAGTTTTGTTCAGGATTTTCTCAAATCTTATCCtta
ctttttcctgattttttgttgatttttctgttgattagccaggtaggtcc
ataaaagtatcacttgtttgttTGTTCATGAGGTGTGTTGTTTTGTATTT
CACAGCACCTAGAACAGATATTATTTCTGTCATTTAAATTGTTATTTTCT
ACTGAATTATCCTGTGAATTCGTTTTTAGAaaacaattcttaaaaaaaat
gaccACCACAGAAACCACTCAGAAGCCTACTGCTGCCTCATCTCAAAATC
CAAAAGATGCTATTGAAAGAGTTGTTATCCACCCATTGGTGCTGCTTAGT
GTTGTCGATCATTTTAACAGAATGTCAAAAGTTGGTAACCAGCGCCGTGT
AGCTGGTATTCTTTTGGGGTCAATACGTAATAAAGTTTTGGATGTGGCAA
ATAGTTTTGCCAGTAAGTATGGTCTTTATAggatttctttttcattcaat
ttcaaTCACTTTCAGAAAGTTTTTGGGCCACCAACAAAATTCTCAATCCA
TATANTCAATTTCAATCACTTTCAGAAAGTTTTTGGGCCACCAACAAAAT
TCTCAATACATATTTCACATAGCCTCAGCCCCCGCTGGGGGGTTGGACTT
AAAAATcaggggacctaatttttgcctgggacctaaacccagacTGACGC
TATGTATCGTTGAACATAACACATCAGTCAGACGTTTGGTGTAAATACCA
TTTATTAAATGTTATAGATTAGTTGAAGATGTTGAAATTCACTAACagat
tttttccttttcttagTACCATTTGATGAAGATGATAGAGATCCATCTGT
ATGGTATCTTGATCATGACTATTTGGATAACATGGCTGCTATGTTCAAAA
AAGTTAATGGTGAGAACATAATGTTTTTTCAACTGGATCAAATCCAAACT
AGATTTATCCAAACAAATTCAACTGCtagaaattttatttacaaTTGCCA
TAATACCTTACCATATTGATACTTGCgatattttaaaataataacatcca
agagataaaaagaaaggttaaGATAAGAACATGGTTTAGCCTTTAAGTAC
ACATTTtctttatattatatttatctTATCGATTCATTTAGCTAAAGAAC
GTGTCATCGGTTGGTACCATACTGGACCTAAACTTCATCCCAACGATATT
CGTATCAATGAGCTTGTCAGGAGATTCAATCCAAATTCAGTAAGGCTTAc
tattaaaaaaagaaacaattttaaACTACCCTTTTGCGAATTTGAGGTCT
CAGTTACAAACtaatagcttgttttttaaaAGGATTGACCTTCTTCATTA
ACTGGGGGTTATGGAAAAAGAGGtaaagctctagtttagacggctgactt
tctgccctgcctattcaaATTGTCAGTAAGCAGAGAATGGGCaaaaagtt
ggcagttaaaatttTACTTGAATAAGATTGAaggaagtcattgcattgac
atcaaaagagggcaatacattgactttagacagcccactttatgcctact
tttaaattcaaaattagaatagacagggcgaaaagtgggccgtctaaact
agagctaacaAATTTTATGATTATATTATATGGAAGTGATTACTGTGTTT
ATAACGATTCTTAAAAAATTGAGGTACTCGCTTgtattttcaatcatttt
tgttaATGTTTAGGTTCTGGTCATCATCGATGCTAAACCCAAAGAACTAG
GACTTCCAACTGAAGCATACATTGCTATTGAAGAAGTGCACGATGTAAGT
GGATCCTTTCTTTCGTTTTCGTGTTCTTTTTCTCGTAATCTAAGTGCCTC
TTATTCCTTCTACATTAGATGAACAGTTGTTCTCTGTTATTAATATTATA
ACTTCACTATAAATTCCATTATTCGTTAACCTTCCACAATTTGATATGGA
GCTTCTTCTATGGGTGCTCTCAAATGGTGTATAGGTCATGGCACCTCTAG
TTCCCTTTTCTGCGTATACAGTCCACGATCAGTGTAATCGGACCAAACTT
CGATTAAATATTAGCCCTGTTTTGTATGATCTCGAAAATATAACAATGTC
AGGATTTAGGAAATTCATTGCTAGACGATAACGACCTGCCATAACCACCA
GCAGTAGTACTGACTATTAGTTATCTTCTTTTCTTCACAACAGGACGGTA
CGCCAACATCGAAAACGTTCGAACACATTCCGAGTGAAATCGGTGCCGAA
GAAGCTGAAGAAGTCGGTGTTGAACATCTCCTCAGGTAACGatactattc
aaatttttaaaactcaattttaTATGTCATATTTTCTTGGCTTGGTATCG
AGCACTATGGTGGCTTTGGTTTTTCTAGGGTTTACTGTAAGGGTTACTGT
AGTAGGACAAgtaaaaaacttgagattctcgAAATTATCTctttttatgt
ttgtttttttcctcAGGGACATTCGAAACGTTACAGTGGGTACCCTCTCA
CAGCGTATCACTAACCAAGTGTCGTCACTTAAAGGACTACACGCTCACTT
GCAAGACATTCATACGTACTTAGAGCAAGTCATCAGCGGTAAACTACCTG
TCAATCATACCATCATGTACCATCTGCAAGATATTTTCAATCTGTTACCC
AACCTCAACGTTGAGGAATTCATTAAATCAATTACGGTGATGACCAACGA
TCAAATGGTAGTTATTTATTTAGCATCCGTCGTACGTACAGTCATTGCAC
TCCACAATCTCATTAATAACAAACTACAAAATAAGGACTTAGAACGGGAA
AAAGAAGAAGGCAAGAAAGATAAAGATGCAACAAAGGCTGATAAGgatga
gaaaaaagataaaaaggaCTCCTCGAAAGATGACAAATCTACAACGGATA
AGAAAGAATCGACCACCAAGAAATAAATGTTGAGATGTTGTTATTTTTAC
TCATTAGGTTttgaattttgtgaaaaaagggATTTCAGTGACTTTTCCGA
ACTGGTATTGTTCATAGAATGTTATTCTCATATTACAACTGATatattta
aatcatgttttggAAATGGCTAATCCACGGTAATCTCTGGATAGACGATT
CTTTATCGTAACAAAGTTACTGACAATTTAATATTAGTATACTAATCTGA
TATTCCAACTCACCACTTCctcaaaatccaaattttagATATTCGGCCCC
CAGATTTTCTTAttgatttcaaaacttttcgtTTTCAAATTCTACCAACA
ATGAAATGCCAAAAGATTTTGAAAGCACGTAAGAAGATATTGAACATCTC
AGGATAAACTGTTAAGGTTGGAGAGACATCTTGCCTtcgtttgtttttta
aatcaaatgcAATATTTCCACAATTATTGTAACTTATTAACCAACGACCA
ATATCGGATTGAAATGTTGAACTTCCActaatgttttgaaagtttttaac
tACAGGAATTTTAAGCTTCTTCATTTTCCGTAGGAtatttttgttatgaa
tttCAACATAgatcatttttttgaatttgcaaATATGTTATAAACTGTTT
GTATATTTTCTGTGTTTGTTTTCTCCCCTTCTTCTTTGCTGTTTAGGGGT
TTTTCTGGACATTTTGAGGATTATTTGCATTGCCTGCCCAGTTATTATGC
GTAAAATCCTGTCACTTATCAGcgcttatttttgttttgtcaaaAAGCCA
TCTTTTGACCAATACGATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009671XLOC_009671Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017283-exon-sc0000264-1491911889:293488..294199TCONS_00017283-exon-sc0000264-1491911889:293488..294199Clytia hemisphaericaexon
TCONS_00017283-exon-sc0000264-1510915933:293488..294199TCONS_00017283-exon-sc0000264-1510915933:293488..294199Clytia hemisphaericaexon
TCONS_00017283-exon-sc0000264-1575043694:293488..294199TCONS_00017283-exon-sc0000264-1575043694:293488..294199Clytia hemisphaericaexon
TCONS_00017283-exon-sc0000264-1491911889:294554..294646TCONS_00017283-exon-sc0000264-1491911889:294554..294646Clytia hemisphaericaexon
TCONS_00017283-exon-sc0000264-1510915933:294554..294646TCONS_00017283-exon-sc0000264-1510915933:294554..294646Clytia hemisphaericaexon
TCONS_00017283-exon-sc0000264-1575043694:294554..294646TCONS_00017283-exon-sc0000264-1575043694:294554..294646Clytia hemisphaericaexon
TCONS_00017283-exon-sc0000264-1491911889:294879..294976TCONS_00017283-exon-sc0000264-1491911889:294879..294976Clytia hemisphaericaexon
TCONS_00017283-exon-sc0000264-1510915933:294879..294976TCONS_00017283-exon-sc0000264-1510915933:294879..294976Clytia hemisphaericaexon
TCONS_00017283-exon-sc0000264-1575043694:294879..294976TCONS_00017283-exon-sc0000264-1575043694:294879..294976Clytia hemisphaericaexon
TCONS_00017283-exon-sc0000264-1491911889:295451..295531TCONS_00017283-exon-sc0000264-1491911889:295451..295531Clytia hemisphaericaexon
TCONS_00017283-exon-sc0000264-1510915933:295451..295531TCONS_00017283-exon-sc0000264-1510915933:295451..295531Clytia hemisphaericaexon
TCONS_00017283-exon-sc0000264-1575043694:295451..295531TCONS_00017283-exon-sc0000264-1575043694:295451..295531Clytia hemisphaericaexon
TCONS_00017283-exon-sc0000264-1491911889:295931..296022TCONS_00017283-exon-sc0000264-1491911889:295931..296022Clytia hemisphaericaexon
TCONS_00017283-exon-sc0000264-1510915933:295931..296022TCONS_00017283-exon-sc0000264-1510915933:295931..296022Clytia hemisphaericaexon
TCONS_00017283-exon-sc0000264-1575043694:295931..296022TCONS_00017283-exon-sc0000264-1575043694:295931..296022Clytia hemisphaericaexon
TCONS_00017283-exon-sc0000264-1491911889:296204..297457TCONS_00017283-exon-sc0000264-1491911889:296204..297457Clytia hemisphaericaexon
TCONS_00017283-exon-sc0000264-1510915933:296204..297457TCONS_00017283-exon-sc0000264-1510915933:296204..297457Clytia hemisphaericaexon
TCONS_00017283-exon-sc0000264-1575043694:296204..297457TCONS_00017283-exon-sc0000264-1575043694:296204..297457Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000264supercontigsc0000264:293488..297457 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.10809	0	0.244937	0.83152	1.16367	0.576322	0.277537	0.650347	2.36013	3.1379	3.70673	2.49317	2.06664	2.57299	0.368243	0.263463	0.243595	0.249017	0.114269	0	0.936723	1.52659	0.247693	0.451003	0.464059	0.516799	1.62023	1.26227	1.07837	1.22315
Blast
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BLAST of TCONS_00017283 vs. Swiss-Prot (Human)
Match: PSMD7 (26S proteasome non-ATPase regulatory subunit 7 OS=Homo sapiens GN=PSMD7 PE=1 SV=2)

HSP 1 Score: 431.795 bits (1109), Expect = 1.246e-144
Identity = 208/283 (73.50%), Postives = 257/283 (90.81%), Query Frame = 1 
Query:  550 PKDAIERVVIHPLVLLSVVDHFNRMSKVGNQRRVAGILLGSIRNKVLDVANSFAIPFDEDDRDPSVWYLDHDYLDNMAAMFKKVNAKERVIGWYHTGPKLHPNDIRINELVRRFNPNSVLVIIDAKPKELGLPTEAYIAIEEVHDDGTPTSKTFEHIPSEIXXXXXXXXXXXHLLRDIRNVTVGTLSQRITNQVSSLKGLHAHLQDIHTYLEQVISGKLPVNHTIMYHLQDIFNLLPNLNVEEFIKSITVMTNDQMVVIYLASVVRTVIALHNLINNKLQNKD 1398
            P+ A+++VV+HPLVLLSVVDHFNR+ KVGNQ+RV G+LLGS + KVLDV+NSFA+PFDEDD+D SVW+LDHDYL+NM  MFKKVNA+ER++GWYHTGPKLH NDI INEL++R+ PNSVLVIID KPK+LGLPTEAYI++EEVHDDGTPTSKTFEH+ SEIGAEEAEEVGVEHLLRDI++ TVGTLSQRITNQV  LKGL++ L DI +YLE+V +GKLP+NH I+Y LQD+FNLLP+++++EF+K+  + TNDQMVV+YLAS++R+V+ALHNLINNK+ N+D
Sbjct:    2 PELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRD 284
The following BLAST results are available for this feature:
BLAST of TCONS_00017283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSMD71.246e-14473.5026S proteasome non-ATPase regulatory subunit 7 OS=... [more]
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