|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017290 ID=TCONS_00017290|Name=TCONS_00017290|organism=Clytia hemisphaerica|type=transcript|length=2236bp
ATTCAATTTGGTTTCATCACCATTTTCGTGGCAGCATTCCCTCTTGCACC
ATTCTTTGCTCTTGCtaacaatatttttgaaatccgTATCGATTCAAATA
AGTTGATCTGTGAGTCGAGGCGGCCGATCGCCGACCGTGCACAAGACTTA
GGAATTTGGTATAATATTCTGGATGCAGTCGCCAAGATAGCTGTCATCTC
CAATgCTTTTCTAATAGCTTTCACGTCGAACTTTTTACCGAAGCTACTCT
ACCGTTCGACAGTCTCTCCTAATGGATCACTGGATGGTTATCTTGATTTC
TCATTGGCTCACGCACCTCCAAATACCACTGGTGAACCTTGCAGGTATCG
AGATTTCCGAGATGAAGATGGATCTCTATCGAAGTTTTATTGGCATTTGT
TGGCGCTGAAGCTCGGCTTTGTCATTGTTTTTGAGCATTTCATCTTTGCC
ACGCATCATTTCATTGATTTCTTGGTACCAGACATCCCTGAAGAATTGGA
TGTTGCAATTAAACGAGAAGCTTACCGAGCGAAGAAAGCATTGTCAGATA
ACCCGACACTCAATGAAAACTCAGAAGACGAACTTGATgagaaaaatatt
gatattagAACTGTTCACTAATCGCCTGTTACTATGACtacatagaaaat
tttttcgTGTTTGCCACGACAAATGGGGATCAACAATGATCGGGTGTAAT
GTacagaaatttttagtttcacCGGAAACAAATTTGGTTCCAGAGAATTT
TTGTTGTCGAAAGAGTTTAGATGTCCATCGGCCTATTGGATATTTCTTGT
TTTCCATATTTGGTTTTGTGTTTTTCGAGTTGTTGCCTGGATGTCGAACC
ATAATGTCGGTGTTTTTATAATGTCCGTTTTCAATAATATCGATATCTCA
ATAATGTTAAAAATCATATCAAGAAGGTGGTGGGAGACAAATCCAACTAT
CCCTTTTCATCAACTTGAGTCACAAGCAGCTGTACAACCTTATCTAACAT
GATTATGATTTTTACACAAGAAATAATTTGATCTCTTTGCTTTGGTTCCT
TCAACGCATGAGATACTGCAAGCCTTACATTGTGAATACAAAACATTGCT
CGAGACTCTGATTGAATGGGAACTCCCAAAAGGACGTTCTGCTTTACATA
ATAGTGCCAACCTTAAGCACGGAGCTATCAAAGAATACGGTACATTTTAA
ATTCAAACGGATCTACCGGGACCTTGATATGTTCATGTCCACTGGCGAAC
GTTCGCTGACTTCGAAAACAAACCAAGCAAGCAAAATTTTTCGTCATTAT
CATCTCCGTGAAGACTTTTTAGATACTAAGTGTTGTAAAGGTCTGGTTTC
AGTTTTTTCTCTTTATCAAAGAATgctaagaatcttttttttacagatTG
GGTtaccttttatttatttttttatatttttcgaaaatttcctgGCTTGG
CTATGGAAATAATTATTAAAGATCATTTTTTTAATTAGTAGGGGGATTTT
AGTACATTACACAGGGGTAACATTTTACACACACTTTTTCTTTAGATACT
CTTAGTCAATTTTTGTTTATCGTTCCACAAATGGCCATTCGACTAAAACA
GTGGGTGATAAATTTAGGCTCAGGCAAATTCAAGCTAGAATTCTTCTTGT
CTTTACGATGGCTCATTTCTATCATGAAATGTCTCAGTTGAAATTAATCT
ACTTTAAGCAAAGATATTTATTTAGTTTTGTGTATTCATAATTTGGTTAA
AACCCCTCTTTTCATATGGGAATATTCATGTACCTTCTCTGAGGATTAGT
GCCCAATATAGAGCTTTGTGTTCAACAACTCACTCAATTTAATTGGTAAA
TGCTACTAATTGTTTTGAAGCTCTGACGTAcactgttttttataagaatt
atatAAATCGAAGCGACTCTCGTGACTCTCCAAATTTTTTAGCTTTGtgt
cttaaaattaaaaaaataaaaaaattgaaatctaagaaATTCCCATATTG
AAGAAAGAAATATATCCAAAAAACTCTTATACAAAACTGTGTATCCTCTA
AGAGTTTTAAGATTTGGTTACTTGTACTTTACTTGTGGTTATTCTATGTC
ATGTATCTCATTATCTTGTCAACGTACTATAAATATTGAATATATattta
tttagaaaataaaCGAAATCGGAATTGTAAATAATTAAACCTTAgaagag
aaaacaaaacaataaagaaagaaagattaatCGGAG Run BLAST on NCBI protein sequence of TCONS_00017290-protein >TCONS_00017290-protein ID=TCONS_00017290-protein|Name=TCONS_00017290-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
IQFGFITIFVAAFPLAPFFALANNIFEIRIDSNKLICESRRPIADRAQDL
GIWYNILDAVAKIAVISNAFLIAFTSNFLPKLLYRSTVSPNGSLDGYLDF
SLAHAPPNTTGEPCRYRDFRDEDGSLSKFYWHLLALKLGFVIVFEHFIFA
THHFIDFLVPDIPEELDVAIKREAYRAKKALSDNPTLNENSEDELDEKNI
DIRTVH Run BLAST on NCBI transcript from alignment at sc0000264:4021..7794- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017290 ID=TCONS_00017290|Name=TCONS_00017290|organism=Clytia hemisphaerica|type=transcript|length=3774bp|location=Sequence derived from alignment at sc0000264:4021..7794- (Clytia hemisphaerica)
ATTCAATTTGGTTTCATCACCATTTTCGTGGCAGCATTCCCTCTTGCACC
ATTCTTTGCTCTTGCTAACAATATTTTTGAAATCCGTATCGATTCAAATA
AGTTGATCTGTGAGTCGAGGCGGCCGATCGCCGACCGTGCACAAGACTTA
GGAATTTGGTATAATATTCTGGATGCAGTCGCCAAGATAGCTGTCATCTC
CAATGTAAGTATAATATTTTCAGCATTTTTCCGGTTTTATAGTTTTCGAT
TTTTATGTACTACCTTAACTATTACCTAGCTAGTCCGATACGAGGGTTTT
ATTTCGTGAATTTTGCATTTTTGACATTTATTTTTTCGCCGAAATTCTTT
CATTTTTCAAAGTGTACCTTTAAGTTTATTTTTTGTAAGCTGAGGGAAAC
CAGCTTATTCATTCTGATTTCACGTTTTTTATAAGAACATCCAAAATTTT
TTGAAACTCCTAAAAATGTTCTTAAAATGTTCTTCACTATTTAATGAGTA
TTCTTTTCCATTTTCCCAAGAAATTGAGTGTTTAGAGTCCGAAAGCATTA
AAATGTTCTTACTTCTAAACTTGTTCTCTAGTTTGTTCTTATACAAAAAT
TTCTTCTATTTTCTTTTTTACAGGCTTTTCTAATAGCTTTCACGTCGAAC
TTTTTACCGAAGCTACTCTACCGTTCGACAGTCTCTCCTAATGGATCACT
GGATGGTTATCTTGATTTCTCATTGGCTCACGCACCTCCAAATACCACTG
GTGAACCTTGCAGGTAGACGTCACATCTTTATTCTCTATGATTTGAAAGA
GAAAATTTCCTACCTCGGGTTAAAATTGTATTCTTTGCGCGAACAATGAG
TTTGATTTTGCCGAGAAGGATCCAATTTCGTTAAAATCTCAGATTAAAGT
GTCCTTTTTCATAGTCTTTATACAGACTACCCTTATCCCTTTCATTATTT
TTGCACTGTGTCTGAACTAGTCGTCTAGCATGCACGAATTCATCATTCAA
AAAGTCCTTTGATCTTCTTTGCTTCTTTCAACTCTTCTTATTTTATTTCT
CTCATAAGGTATCGAGATTTCCGAGATGAAGATGGATCTCTATCGAAGTT
TTATTGGCATTTGTTGGCGCTGAAGCTCGGCTTTGTCATTGTTTTTGAGG
TAAAATTATCCTTCAAGTGATTCGTTATCTTTAGATTTTGTTTTCAAAAA
GTTTTGTACAACCCTAACAACTTGCGCAGTTAAGTGACCTTCATTGTATA
TTTTGACTTTTCCGGAACAGAAATCTGTCATAATGTTTGAAAAACTGTAC
GAATTTATAATTCTAAAAGTGTTTACTCACAAACTTTCCTGGAATTCGAA
GAGGCAGTTGAAACCGAAAGAGATGAGGAGTTTACGTTACATGATTAGAC
TTTCTTGACAGTGATGTACGTCTTCTTACTGAAACAAAGACAAAATTCAA
AAGATTCGATTCTTTGAAATAGTTTAAAAGATTTGATTATTTTGCAGTGG
CGTACACGCGTTTTTATAAGAACCAGTATATTTATATTATATATAGGTTA
TTAATATATTGAGATTTTCAGCCTTCTCGTAATATTTTTCCGAGCCTTCA
TAAATAAAAATTGGGGGAAGATTACAATGACTATAAACCCCTTAGTTTAT
CTCTCTATATTGTTGATTCGGTCCTGGTTTTATTTAGTTTGTTCTAAAAT
ATTCTCTAGAGCTGAATATCAGATTTTTCTTAACTTGTTCTTAGATTTTG
GCCAGTTTTCAGCCTCACGTTCTCATAAAATTATTCTCATAAAAAAAGCG
TTTAACTTCTCTTATATGAAGCGTTTCGAATTTTTCAATGTATTTCATTC
GTCAATATTATAAATTAGTATTTTAAATTGAAATTTGCTCTGCTTACTTG
TTGGTATAGAGCACTTTTCTGAGAAGTTGTTTTAAATTCTTCATTTCTTT
CATCAATGTTATTCTTTTTTTAGCATTTCATCTTTGCCACGCATCATTTC
ATTGATTTCTTGGTACCAGACATCCCTGAAGAATTGGATGTTGCAATTAA
ACGAGAAGCTTACCGAGCGAAGAAAGCATTGTCAGATAACCCGACACTCA
ATGAAAACTCAGAAGACGAACTTGATGAGAAAAATATTGATATTAGAACT
GTTCACTAATCGCCTGTTACTATGACTACATAGAAAATTTTTTCGTGTTT
GCCACGACAAATGGGGATCAACAATGATCGGGTGTAATGTACAGAAATTT
TTAGTTTCACCGGAAACAAATTTGGTTCCAGAGAATTTTTGTTGTCGAAA
GAGTTTAGATGTCCATCGGCCTATTGGATATTTCTTGTTTTCCATATTTG
GTTTTGTGTTTTTCGAGTTGTTGCCTGGATGTCGAACCATAATGTCGGTG
TTTTTATAATGTCCGTTTTCAATAATATCGATATCTCAATAATGTTAAAA
ATCATATCAAGAAGGTGGTGGGAGACAAATCCAACTATCCCTTTTCATCA
ACTTGAGTCACAAGCAGCTGTACAACCTTATCTAACATGATTATGATTTT
TACACAAGAAATAATTTGATCTCTTTGCTTTGGTTCCTTCAACGCATGAG
ATACTGCAAGCCTTACATTGTGAATACAAAACATTGCTCGAGACTCTGAT
TGAATGGGAACTCCCAAAAGGACGTTCTGCTTTACATAATAGTGCCAACC
TTAAGCACGGAGCTATCAAAGAATACGGTACATTTTAAATTCAAACGGAT
CTACCGGGACCTTGATATGTTCATGTCCACTGGCGAACGTTCGCTGACTT
CGAAAACAAACCAAGCAAGCAAAATTTTTCGTCATTATCATCTCCGTGAA
GACTTTTTAGATACTAAGTGTTGTAAAGGTCTGGTTTCAGTTTTTTCTCT
TTATCAAAGAATGCTAAGAATCTTTTTTTTACAGATTGGGTTACCTTTTA
TTTATTTTTTTATATTTTTCGAAAATTTCCTGGCTTGGCTATGGAAATAA
TTATTAAAGATCATTTTTTTAATTAGTAGGGGGATTTTAGTACATTACAC
AGGGGTAACATTTTACACACACTTTTTCTTTAGATACTCTTAGTCAATTT
TTGTTTATCGTTCCACAAATGGCCATTCGACTAAAACAGTGGGTGATAAA
TTTAGGCTCAGGCAAATTCAAGCTAGAATTCTTCTTGTCTTTACGATGGC
TCATTTCTATCATGAAATGTCTCAGTTGAAATTAATCTACTTTAAGCAAA
GATATTTATTTAGTTTTGTGTATTCATAATTTGGTTAAAACCCCTCTTTT
CATATGGGAATATTCATGTACCTTCTCTGAGGATTAGTGCCCAATATAGA
GCTTTGTGTTCAACAACTCACTCAATTTAATTGGTAAATGCTACTAATTG
TTTTGAAGCTCTGACGTACACTGTTTTTTATAAGAATTATATAAATCGAA
GCGACTCTCGTGACTCTCCAAATTTTTTAGCTTTGTGTCTTAAAATTAAA
AAAATAAAAAAATTGAAATCTAAGAAATTCCCATATTGAAGAAAGAAATA
TATCCAAAAAACTCTTATACAAAACTGTGTATCCTCTAAGAGTTTTAAGA
TTTGGTTACTTGTACTTTACTTGTGGTTATTCTATGTCATGTATCTCATT
ATCTTGTCAACGTACTATAAATATTGAATATATATTTATTTAGAAAATAA
ACGAAATCGGAATTGTAAATAATTAAACCTTAGAAGAGAAAACAAAACAA
TAAAGAAAGAAAGATTAATCGGAG Coding sequence (CDS) from alignment at sc0000264:4021..7794- >TCONS_00017290 ID=TCONS_00017290|Name=TCONS_00017290|organism=Clytia hemisphaerica|type=CDS|length=2484bp|location=Sequence derived from alignment at sc0000264:4021..7794- (Clytia hemisphaerica)
CATTTCATCTTTGCCACGCATCATTTCATTGATTTCTTGGTACCAGACAT
CCCTGAAGAATTGGATGTTGCAATTAAACGAGAAGCTTACCGAGCGAAGA
AAGCATTGTCAGATAACCCGACACTCAATGAAAACTCAGAAGACGAACTT
GATGAGAAAAATATTGATATTAGAACTGTTCACTAAGTATCGAGATTTCC
GAGATGAAGATGGATCTCTATCGAAGTTTTATTGGCATTTGTTGGCGCTG
AAGCTCGGCTTTGTCATTGTTTTTGAGGCTTTTCTAATAGCTTTCACGTC
GAACTTTTTACCGAAGCTACTCTACCGTTCGACAGTCTCTCCTAATGGAT
CACTGGATGGTTATCTTGATTTCTCATTGGCTCACGCACCTCCAAATACC
ACTGGTGAACCTTGCAGATTCAATTTGGTTTCATCACCATTTTCGTGGCA
GCATTCCCTCTTGCACCATTCTTTGCTCTTGCTAACAATATTTTTGAAAT
CCGTATCGATTCAAATAAGTTGATCTGTGAGTCGAGGCGGCCGATCGCCG
ACCGTGCACAAGACTTAGGAATTTGGTATAATATTCTGGATGCAGTCGCC
AAGATAGCTGTCATCTCCAATCATTTCATCTTTGCCACGCATCATTTCAT
TGATTTCTTGGTACCAGACATCCCTGAAGAATTGGATGTTGCAATTAAAC
GAGAAGCTTACCGAGCGAAGAAAGCATTGTCAGATAACCCGACACTCAAT
GAAAACTCAGAAGACGAACTTGATGAGAAAAATATTGATATTAGAACTGT
TCACTAAGTATCGAGATTTCCGAGATGAAGATGGATCTCTATCGAAGTTT
TATTGGCATTTGTTGGCGCTGAAGCTCGGCTTTGTCATTGTTTTTGAGGC
TTTTCTAATAGCTTTCACGTCGAACTTTTTACCGAAGCTACTCTACCGTT
CGACAGTCTCTCCTAATGGATCACTGGATGGTTATCTTGATTTCTCATTG
GCTCACGCACCTCCAAATACCACTGGTGAACCTTGCAGATTCAATTTGGT
TTCATCACCATTTTCGTGGCAGCATTCCCTCTTGCACCATTCTTTGCTCT
TGCTAACAATATTTTTGAAATCCGTATCGATTCAAATAAGTTGATCTGTG
AGTCGAGGCGGCCGATCGCCGACCGTGCACAAGACTTAGGAATTTGGTAT
AATATTCTGGATGCAGTCGCCAAGATAGCTGTCATCTCCAATCATTTCAT
CTTTGCCACGCATCATTTCATTGATTTCTTGGTACCAGACATCCCTGAAG
AATTGGATGTTGCAATTAAACGAGAAGCTTACCGAGCGAAGAAAGCATTG
TCAGATAACCCGACACTCAATGAAAACTCAGAAGACGAACTTGATGAGAA
AAATATTGATATTAGAACTGTTCACTAAGTATCGAGATTTCCGAGATGAA
GATGGATCTCTATCGAAGTTTTATTGGCATTTGTTGGCGCTGAAGCTCGG
CTTTGTCATTGTTTTTGAGGCTTTTCTAATAGCTTTCACGTCGAACTTTT
TACCGAAGCTACTCTACCGTTCGACAGTCTCTCCTAATGGATCACTGGAT
GGTTATCTTGATTTCTCATTGGCTCACGCACCTCCAAATACCACTGGTGA
ACCTTGCAGATTCAATTTGGTTTCATCACCATTTTCGTGGCAGCATTCCC
TCTTGCACCATTCTTTGCTCTTGCTAACAATATTTTTGAAATCCGTATCG
ATTCAAATAAGTTGATCTGTGAGTCGAGGCGGCCGATCGCCGACCGTGCA
CAAGACTTAGGAATTTGGTATAATATTCTGGATGCAGTCGCCAAGATAGC
TGTCATCTCCAATCATTTCATCTTTGCCACGCATCATTTCATTGATTTCT
TGGTACCAGACATCCCTGAAGAATTGGATGTTGCAATTAAACGAGAAGCT
TACCGAGCGAAGAAAGCATTGTCAGATAACCCGACACTCAATGAAAACTC
AGAAGACGAACTTGATGAGAAAAATATTGATATTAGAACTGTTCACTAAG
TATCGAGATTTCCGAGATGAAGATGGATCTCTATCGAAGTTTTATTGGCA
TTTGTTGGCGCTGAAGCTCGGCTTTGTCATTGTTTTTGAGGCTTTTCTAA
TAGCTTTCACGTCGAACTTTTTACCGAAGCTACTCTACCGTTCGACAGTC
TCTCCTAATGGATCACTGGATGGTTATCTTGATTTCTCATTGGCTCACGC
ACCTCCAAATACCACTGGTGAACCTTGCAGATTCAATTTGGTTTCATCAC
CATTTTCGTGGCAGCATTCCCTCTTGCACCATTCTTTGCTCTTGCTAACA
ATATTTTTGAAATCCGTATCGATTCAAATAAGTTGATCTGTGAGTCGAGG
CGGCCGATCGCCGACCGTGCACAAGACTTAGGAATTTGGTATAATATTCT
GGATGCAGTCGCCAAGATAGCTGTCATCTCCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017290-exon-sc0000264-1575043694:7591..7794 | TCONS_00017290-exon-sc0000264-1575043694:7591..7794 | Clytia hemisphaerica | exon |
| TCONS_00017290-exon-sc0000264-1575043694:7032..7171 | TCONS_00017290-exon-sc0000264-1575043694:7032..7171 | Clytia hemisphaerica | exon |
| TCONS_00017290-exon-sc0000264-1575043694:6646..6736 | TCONS_00017290-exon-sc0000264-1575043694:6646..6736 | Clytia hemisphaerica | exon |
| TCONS_00017290-exon-sc0000264-1575043694:4021..5821 | TCONS_00017290-exon-sc0000264-1575043694:4021..5821 | Clytia hemisphaerica | exon |
| TCONS_00017290-exon-sc0000264-1510915933:7591..7794 | TCONS_00017290-exon-sc0000264-1510915933:7591..7794 | Clytia hemisphaerica | exon |
| TCONS_00017290-exon-sc0000264-1510915933:7032..7171 | TCONS_00017290-exon-sc0000264-1510915933:7032..7171 | Clytia hemisphaerica | exon |
| TCONS_00017290-exon-sc0000264-1510915933:6646..6736 | TCONS_00017290-exon-sc0000264-1510915933:6646..6736 | Clytia hemisphaerica | exon |
| TCONS_00017290-exon-sc0000264-1510915933:4021..5821 | TCONS_00017290-exon-sc0000264-1510915933:4021..5821 | Clytia hemisphaerica | exon |
| TCONS_00017290-exon-sc0000264-1491911889:7591..7794 | TCONS_00017290-exon-sc0000264-1491911889:7591..7794 | Clytia hemisphaerica | exon |
| TCONS_00017290-exon-sc0000264-1491911889:7032..7171 | TCONS_00017290-exon-sc0000264-1491911889:7032..7171 | Clytia hemisphaerica | exon |
| TCONS_00017290-exon-sc0000264-1491911889:6646..6736 | TCONS_00017290-exon-sc0000264-1491911889:6646..6736 | Clytia hemisphaerica | exon |
| TCONS_00017290-exon-sc0000264-1491911889:4021..5821 | TCONS_00017290-exon-sc0000264-1491911889:4021..5821 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000264 | supercontig | sc0000264:4021..7794 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007632 | Anoctamin |
Blast
BLAST of TCONS_00017290 vs. Swiss-Prot (Human)
Match: ANO7 (Anoctamin-7 OS=Homo sapiens GN=ANO7 PE=1 SV=2) HSP 1 Score: 204.142 bits (518), Expect = 4.019e-55 Identity = 109/204 (53.43%), Postives = 149/204 (73.04%), Query Frame = 1
Query: 1 IQFGFITIFVXXXXXXXXXXXXNNIFEIRIDSNKLICESRRPIADRAQDLGIWYNILDAVAKIAVISNAFLIAFTSNFLPKLLYRSTVSPNGSLDGYLDFSLAHAPPNTTG---EPCRYRDFRDEDGSLSKFYWHLLALKLGFVIVFEHFIFATHHFIDFLVPDIPEELDVAIKREAYRAKKALSDNPTL--NENSEDELDEKN 597
+QFGF+TIFVAA PLAP FAL NN EIR+D+ K +CE RRP+A+RAQD+GIW++IL + +AVISNAFL+AF+S+FLP+ YR T + + L G+L+F+LA AP + CRYR FRD+DG S+ YW+LLA++L FVIVFEH +F+ +D LVPDIPE +++ +KRE Y AK+AL++N L ++DE E +
Sbjct: 713 LQFGFVTIFVAACPLAPLFALLNNWVEIRLDARKFVCEYRRPVAERAQDIGIWFHILAGLTHLAVISNAFLLAFSSDFLPRAYYRWTRAHD--LRGFLNFTLARAPSSFAAAHNRTCRYRAFRDDDGHYSQTYWNLLAIRLAFVIVFEHVVFSVGRLLDLLVPDIPESVEIKVKREYYLAKQALAENEVLFGTNGTKDEQPEGS 914
The following BLAST results are available for this feature:
|
