|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017297 ID=TCONS_00017297|Name=TCONS_00017297|organism=Clytia hemisphaerica|type=transcript|length=2925bpRun BLAST on NCBI protein sequence of TCONS_00017297-protein >TCONS_00017297-protein ID=TCONS_00017297-protein|Name=TCONS_00017297-protein|organism=Clytia hemisphaerica|type=polypeptide|length=841bp MKKYKTFLSQPTIDSHHHHKHDDRPRSDSALDETRSLLSPSKRHSNSFVLRun BLAST on NCBI transcript from alignment at sc0000264:8911..36023- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017297 ID=TCONS_00017297|Name=TCONS_00017297|organism=Clytia hemisphaerica|type=transcript|length=27113bp|location=Sequence derived from alignment at sc0000264:8911..36023- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000264:8911..36023- >TCONS_00017297 ID=TCONS_00017297|Name=TCONS_00017297|organism=Clytia hemisphaerica|type=CDS|length=52983bp|location=Sequence derived from alignment at sc0000264:8911..36023- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017297 vs. Swiss-Prot (Human)
Match: ANO7 (Anoctamin-7 OS=Homo sapiens GN=ANO7 PE=1 SV=2) HSP 1 Score: 506.523 bits (1303), Expect = 6.694e-163 Identity = 270/566 (47.70%), Postives = 372/566 (65.72%), Query Frame = 2
Query: 1259 RKIDYVLVYTEE---------EGKQVDPKHLSFRERFLGNLXXXXXXXXXXXXXXXGTKVTFVKCHCPFPVLKYYAEELSFKAPLERRKTDKVNWSERMLAKFHLPNPFFEGVPNPPPDYFTCTFQADKFHLFIGSEKPETYFTDTERTRVCYEILETAPYGKRQKGEIGIERLCAEGVFVASYPLHVGPHKRPKEEGPDSPGDEPQLNQRQVLKAYWGRWGKWLKYQPLDHIRAYFGEKIGLYFAWLGQYTAWLLLPSFVGLLVFLYGIATIKSPDNRDALDICANGKNFTMCPRCDEKIGCKTWTLDDSCGQAMISYLFDNXXXXXXXXXXXXXXXXXLEFWKRKEITLAYQWDCLDYESEVERPRPTFAALAPTVERNPVTGIPEPHFPDKDRAPRIYSGIFIIITMVSLVLIFMLGVIVYK--LLVYRPLAANPLFSKRALQIANTSGAVCNLMCIMILSRVYEKVAQSLTHWEMHRTQTEYEDNLTFKVFVFQFVNFYASIFYIAFFKGKFIGYPGNYTKLFGLRMEECGPGGCLIELAQQLVIIMVGKQIIGNVKEVMIP 2923
R D+VLV+ E+ + H ++RE FL NL+ + + +++ D T V + + VL YYAE+L K PL+ NWS +LA +PN E VP+ PP+Y++C F+ +K F+GS+ +T+FT T+R ++ +EIL PYG +K +GI +L AEGV A++PLH GP K P E GP +P +LNQRQVL +W RWGKW KYQPLDH+R YFGEK+ LYFAWLG YT WLL + VG LVFL G + S + ++C + +F MCP C + C W L +C A LFD+ TVFF++F++ WAV LE+WKRK TLAY+WDC DYE ERPRP FAA AP NP+TG EP+FP++ RA R+ +G +I+ MV++V++ ++ +I+Y+ + + + N L + A +IA+ +G+V NL+ I+ILS++Y +A LT WEMHRTQT++ED T KVF+FQFVNFY+S YIAFFKG+F+GYPGNY LFG+R EEC GGCLIELAQ+L++IMVGKQ+I N++EV+IP
Sbjct: 108 RIADFVLVWEEDLKLDRQQDSAARDRTDMHRTWRETFLDNLRAAGLCVDQQDVQDGNTTVHYALLSASWAVLCYYAEDLRLKLPLQELPNQASNWSAGLLAWLGIPNVLLEVVPDVPPEYYSCRFRVNKLPRFLGSDNQDTFFTSTKRHQILFEILAKTPYGHEKKNLLGIHQLLAEGVLSAAFPLHDGPFKTPPE-GPQAP----RLNQRQVLFQHWARWGKWNKYQPLDHVRRYFGEKVALYFAWLGFYTGWLLPAAVVGTLVFLVGCFLVFS--DIPTQELCGSKDSFEMCPLC---LDCPFWLLSSACALAQAGRLFDHGGTVFFSLFMALWAVLLLEYWKRKSATLAYRWDCSDYEDTEERPRPQFAASAPMTAPNPITGEDEPYFPERSRARRMLAGSVVIVVMVAVVVMCLVSIILYRAIMAIVVSRSGNTLLAAWASRIASLTGSVVNLVFILILSKIYVSLAHVLTRWEMHRTQTKFEDAFTLKVFIFQFVNFYSSPVYIAFFKGRFVGYPGNYHTLFGVRNEECAAGGCLIELAQELLVIMVGKQVINNMQEVLIP 663 The following BLAST results are available for this feature:
BLAST of TCONS_00017297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.