TCONS_00017300 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017300
Unique NameTCONS_00017300
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017300 ID=TCONS_00017300|Name=TCONS_00017300|organism=Clytia hemisphaerica|type=transcript|length=1560bp
GCGAGCGAGACCACTACTTAGAAAGTCATGGAATGATATGACTTTTTATG
ATGCCAAAACCTTCTATGATGCTtgacaacaacattttgcaaaAAGAGAG
CAGAAATCAAGTACACGAACAAAGTATATAACTCTTCGAAAATaaaatca
gaTCCATGAAATGGTTTGTCAATGCAGATTCTGCGACGAAAGGTTTAACA
GCCGACAACTCCGCGATAAACATATCAAAGACTACCTGTTTTACCCATGC
TTGACATGTGCTCAAAAATGCAATTCATTGACTGACCTTGAGCAACATTG
TAAAGATTCAATTCACAGACCTCCCCCATTGGCTCCGGAAACACTAGACG
AACAGTTGCAACTATACCTCCAAGGTGCGTACTACCTAGAGAAAGTCATT
GTTACTCGTACCGATCGTCGAAGAGCAAGAATTTTTGTAcaagattttct
caaaaagatCATGAGGAACGTTATAAGACAACCCAATGGTAGAATGTACT
CACAAATAATCGAACCAGCCGGAAGTACGTCAACCCAAACCAAAATCATA
GTTGCTGATGAATTTGACTTCAATATTGTCCTAAAGGAAACGTTTCAACA
ATTTATTCACAGTGGTCGGACTGTCGTATTTGATATGGAGCATTATGACT
TTGAACCGTTACATCAACGCATTGGATTGAGAGACCTCTTTCCAAATGAG
AAAGTGGTTGTTCCGAATGGATATGTTGCACCGTTACACAGAAACAATGC
ACCACCTAATATTACCAGGCTGTCGTACTACCAACAATTTATACCTAGAT
GGGTCCAAGAAGAtttgtatgtaaaaattaaaaacgcCCTGGATGAAATT
GATATCGGCGACCTAGAGGTTAGATTGAAATGTTATCCAAATGGACCAGC
AATCACGATGTTTATCAAGCACATCCCTGGAATCGATCACGAAATCAGTA
TCGACCTTTCTGCATCAATCAAAACTAACATCCCTGTTAACATCTACGGA
TGGCCTAGAAAAGAAACAAAGGACGTCTTATCTGATCttcaaattgcaaa
aattaagcaAGCAGGCATCATTTTAGTACCAAAACACCAACGATTTTGCA
TCACTTGTTTTGGATAAATGAAGAAAAGTTCGACGAGAAGGAAAATTATT
GGGCTAATCAAAACATCGGCCAATGCTACATGGATATGCTGGAATCACTG
GCAGAGAAATGTCGAGCAAAACATCTTCCAAACTATTTCAATATCCAAGA
AAATATATTGGAGAATAAGCAAACCAGAGTTTTAAACAAGCTGGCAAAGT
TTTGTGAAGAACGAAGATTGGAATTACTTCACATCCATATGAGGTGAACG
CACTGAATGCGAATATTAAATTGCAACCTTTTTATGGTCAAGACCCTATA
ACACGAATATTTCTGTAATATTTTACATTATGattgagttttgaaaaagt
GTCTGTCACAAAAAATTGTAGTGATTGCCTAAGGTTTGTCAGGTggcttt
ttcgaaaaattataaacaaaaaaatgtttctttctgaaaaagaaaacagt
tTACACATAG
Run BLAST on NCBI

transcript from alignment at sc0000264:94456..99489-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017300 ID=TCONS_00017300|Name=TCONS_00017300|organism=Clytia hemisphaerica|type=transcript|length=5034bp|location=Sequence derived from alignment at sc0000264:94456..99489- (Clytia hemisphaerica)
GCGAGCGAGACCACTACTTAGAAAGTCATGGAATGATATGACTTTTTATG
ATGCCAAAACCTTCTATGATGCTTGACAACAACATTTTGCAAAAAGAGAG
CAGAAATCAAGTACACGAACAAAGTATATAACTCTTCGAAAATGTAAGTG
TATAATTTAAGTTTTTCTTTAAATTTATTTCAAACGTTTATTCTTTCAAC
GCAATTCTTTTTGTCCCACGCATATTCTTGGATGGTCCTCGAATCTTAAA
ATTTCAACGTAATTACTCTAGATATTTTTTACGAACATCAGATAAAAAGG
GTATTGCTGAGCTTCAAGCAGAGATGCATCAAGTACCATTTTCAACTAAG
TACGAAATCTTTGGTATGACCCGACCGGGGGTTGAATCCAAGACCTTATT
GCGCCGTAGCTAAATGCCCTAACTTTATACTACATACGGTTCAGTAGCGT
AGACAGGAGGGGCGCAAAATTTGTGTAGGAGAGCAGATTTTTATGAGACT
CTAATTATCTTTTTACATAATGAATAGATAATTACAGTATCATAAAAATC
TGCTCTCCTACACAAATTCTGCGCCCCTCCTGCTGTCTACGCTGCTCCAG
TCAGCTGATAATATATTCCTTATTTGATTTTAGAAAATCAGATCCATGAA
ATGGTTTGTCAATGCAGATTCTGCGACGAAAGGTTTAACAGCCGACAACT
CCGCGATAAACATATCAAAGACTACCTGTTTTACCCATGCTTGACATGTG
CTCAAAAATGCAATTCATTGACTGACCTTGAGCAACATTGTAAAGATTCA
ATTCACAGACCTCCCCCATTGGCTCCGGAAACACTAGACGAACAGTTGCA
ACTATACCTCCAAGGTAAAATTGTTTCTGATTTGATTATAATTGGTTCAA
TTTATCATAGCTTGAAAAGTTTCATTCTTTTTATTCTTACGCCAATAATA
TAATGACAATTTTTCAATTTTCATTACTATGATAAAACCATGCGGTCACC
TTCTTTGTTTAACCTTCTTTATGACTATGAGTGTGGCCGCTAGTCTTGCT
TTTTAACCTTTTAAGACCAAATGTATCATTCCTTTTCACTTACTTACTTA
TCTAGGTGCGTACTACCTAGAGAAAGTCATTGTTACTCGTACCGATCGTC
GAAGAGCAAGAATTTTTGTACAAGATTTTCTCAAAAAGATCATGAGGAAC
GTTATAAGACAACCCAATGGTAGAATGTACTCACAAATAATCGAACCAGC
CGGAAGTACGTCAACCCAAACCAAAATCATAGTTGCTGATGAATTTGACT
TCAATATTGTCCTAAAGGAAACGTTTCAACAATTTATTCACAGTGGTCGG
ACTGTCGTATTTGATATGGAGCATGTATGTTTTTTCATTCTTATGAATCA
TGGGTAATCAGGACTGATTGTGCTTTAATAACATCTTCCTGTTTGTCAGA
CGTAAACACCCCTGTCTCACAGCCCTATTGGAACTTTTTAGAAATTCCTA
TTGAAATCCCAATGGGGATAGAAATTCTATTGTTCAAAGGTTAAAAAATC
CAGAGTGCAATTTTTAAACATTTAATTTCGAGTGGGGATGAAATATAAGT
CAATTTCCCAGTGGGGCTAAAATTCCAGGGTATCATCCTACTGGGACGAA
ATTTTTGCCAGATTTTCCAGTGGGGCTGGGTCCCAGCGGGTCTGTGACAC
AGGAGTGTACATAACAATCTTCTAGATTTCGGCTAGCAGGAGAACCGTTA
TTTTTGCGAAGTCCTGAAGTACTCATTACACATGGGGGCCCCGTAAAATG
TGGGTATGGGCTTTCCTCTTGAACTAAAAGTGCGACAAGCGCACTTAGTG
CAAAGATTGACCCAAGCTAAGGCACATTTTTGGCTTTATCTGTATTCTCT
ATTTATAACATATGGAATATGATTATGTACTAATTTTTCCCGAGATTTTT
CGGTCCGTTCTGATTAAAGGAATTAGCAAGTTTATGTATCTGTGTTTATC
AGCGACGGAGATGATTGGCTTCCGATTTGTCTAGATCCTAATTAGCTGAG
ACACTTTACCATCCTCGACTTTTCGGGTCAGAACTGGGGGTTTTTCCAAA
TTGCTTCTGTCACTCCGCCAGTACAAATACATAAAGTTGCCATTTCACCA
TAGTATGACTTTGAACCGTTACATCAACGCATTGGATTGAGAGACCTCTT
TCCAAATGAGAAAGTGGTTGTTCCGAATGGATATGTTGCACCGTTACACA
GAAACAATGCACCACCTAATATTACCAGGCTGTCGTACTACCAACAATTT
ATACCTAGATGGGTCCAAGAAGATTTGTATGTAAAAATTAAAAACGCCCT
GGATGAAATTGATATCGGCGACCTAGGTACGTTCCGTTCATTGTTTTAAA
TTCATTTTGGGGAACGAACAGTATGACGTCTTAAATTTAGGGGAAGAGAA
CGCTATTGTTTGGCCTAATGTGTTTAGTGTGCAAAACATTTTATGGTGTC
AAACCATTGTTTGTTTTCCCCTTCAAATAATTAGATCTTATTGGTTGAAA
GGTTTATCACGTGACTTTACGTCCCGGGGGGGGGGGGGGCAGCTGGGCAA
AATGACCGACGGGTACCTTTTCCAAGATGTTTAAAATGCACTGTAAGGGT
CGGAAAAACTAAAGATGCACTAAGGGTATTCAGAAAATTCATGAAAAATC
TAGATATTTTGACCAAAAATGCTAGAGTTTTGATCATTTTTTAAAACGAA
AAGGATTGAAAATTTGGGGGAAAACGCAGTCTAAGGGTATGATTTTCACC
GATTTTTGCTGCACTGTAAGAGTGCAATTTTAAAAGCAAATTTTTGGCCC
GCACATACCGTCAGTCCGCAAACCCAGTGCCCCCCGGGCTTTGCGTTACG
AATAATGCCTTTATATCAATGCTTCCAGATAAATTTTCATTTGTGTACCT
CTAAATACATGGGTTTAATTTTCACAATATTTTTCTTCGTTGGATTTACT
AGAGGTTAGATTGAAATGTTATCCAAATGGACCAGCAATCACGATGTTTA
TCAAGCACATCCCTGGAATCGATCACGAAATCAGTATCGACCTTTCTGCA
TCAATCAAAACTAACATCCCTGTTAACATCTACGGATGGCCTAGAAAAGA
AACAAAGGACGTCTTATCTGATCTTCAAATTGCAAAAATTAAGCAAGCAG
GCATCATTTTAGTACCAAAACACCAACGATTTTGGTATATATCTTTCTCA
AAAGCTATTACATCTCTGATGCAATTCATTGATGGAGCTAATGAGTGCCG
ACGAACTTGTCACAAGGTTCTGAAACGTGATTTCAAGACGTGGCAATCGG
AACCATACGCCGGAGGCTTGAAAGGAATTTCCACCTATTTGTTTAAGGTA
ATGCAAATTTTTTCACTTTTTCTTATACTTTTATTGTGAAATTGGTCTAA
TGCTTCAGCATCACGAACTAAGGTTGAATCAACATTACCTGCATTGTGAC
TGTTTAGTTATCCTGGGATGGGTGAAGGTATTAGGATTTAGGGAGGCTGA
GTATGTGCGTGCCAGATTAGATGACCTCTTAATGTGACCCTTAGAGATCA
GATATTTTTTACAAAAACTCCTTTGGAAATTCCTTTCAAGCCTCCGGCGT
ATGGTTCCGATTGCCACGTCTTGAAATCACGTTTCAGAATCTTGTGACAA
GTTCGTCGGCACTCATTAGCTCCATCAATGAATTGCATCAGAGATGTGAC
AGCTTTTGAGAAATATTTTCTCCATTTAAAAAAAAATTCCAACTATTTTG
AATTTCTGTCATTTTTTGGTCTGCTAATGTGAAAAACCTAAGATCATTAG
GAAACACTTCTTGACTTCTTGTTCTTTTTACACCAACTCGGATGGAGCAC
CCATTTTTGCTTAAATTCCCTCGGGTACGTCTGTTTGAATTAAAGATTGT
TGTGCTTTTCATGTTAACCCTTAAGTGTTAATATCGTATATATCAGACAT
GGGTTACATGGGCTGTAATGCCCAGTTTGAGTTAGAAATTGTCATTTTTG
GTCTAACTCGTAGGAATTAGATTGGGCTTCATGGTCAAGCAAAAAAATCA
AAAGTGAGTCTTTCCAGCGAGATTTTAAGCCAAAAATGCAAAAAAATGCA
AAAATTTGACAAAAATCCTCTTTTTTAAGATTTTGACCGTTTTTTGAAAA
TCTTTGGTCAACAATTGATCCAAGAACCTCCAAATTTGGCCCTGTTTTAC
TTGATTCTGTCCTCCAGCGAATTAAATTGAAGTTTTATCATTGCATTGGG
CATCCTTCCATCATTCAGGCAGGTACTTTAATTTCCATTACCTACCCCCC
CCTCTTAACTGCCGCCCACCCCACCCTTCCTAAATCGGAAAGAGAAGACT
CTAAGCTATCCAACGAGCTATGAACGAACTTCTAACTCCTTCTAGTTCTC
GAGATATAAGCCTTTAAAGTTTGAACTAGCAATTTTCTTTTAAAAAAATG
ACCGTGGCACTTAAAGTGTTAAATATCATCAACTATAGATCAATCCCACG
TTAATATGTATCCACCTTTAAGCATCACTTGTTTTGGATAAATGAAGAAA
AGTTCGACGAGAAGGAAAATTATTGGGCTAATCAAAACATCGGCCAATGC
TACATGGATATGCTGGAATCACTGGCAGAGAAATGTCGAGCAAAACATCT
TCCAAACTATTTCAATATCCAAGAAAATATATTGGAGAATAAGCAAACCA
GAGTTTTAAACAAGCTGGCAAAGTTTTGTGAAGAACGAAGATTGGAATTA
CTTCACATCCATATGAGGTGAACGCACTGAATGCGAATATTAAATTGCAA
CCTTTTTATGGTCAAGACCCTATAACACGAATATTTCTGTAATATTTTAC
ATTATGATTGAGTTTTGAAAAAGTGTCTGTCACAAAAAATTGTAGTGATT
GCCTAAGGTTTGTCAGGTGGCTTTTTCGAAAAATTATAAACAAAAAAATG
TTTCTTTCTGAAAAAGAAAACAGTTTACACATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009679XLOC_009679Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017300-exon-sc0000264-1575043694:99347..99489TCONS_00017300-exon-sc0000264-1575043694:99347..99489Clytia hemisphaericaexon
TCONS_00017300-exon-sc0000264-1575043694:98626..98856TCONS_00017300-exon-sc0000264-1575043694:98626..98856Clytia hemisphaericaexon
TCONS_00017300-exon-sc0000264-1575043694:98116..98384TCONS_00017300-exon-sc0000264-1575043694:98116..98384Clytia hemisphaericaexon
TCONS_00017300-exon-sc0000264-1575043694:97114..97336TCONS_00017300-exon-sc0000264-1575043694:97114..97336Clytia hemisphaericaexon
TCONS_00017300-exon-sc0000264-1575043694:96256..96487TCONS_00017300-exon-sc0000264-1575043694:96256..96487Clytia hemisphaericaexon
TCONS_00017300-exon-sc0000264-1575043694:94456..94917TCONS_00017300-exon-sc0000264-1575043694:94456..94917Clytia hemisphaericaexon
TCONS_00017300-exon-sc0000264-1510915933:99347..99489TCONS_00017300-exon-sc0000264-1510915933:99347..99489Clytia hemisphaericaexon
TCONS_00017300-exon-sc0000264-1510915933:98626..98856TCONS_00017300-exon-sc0000264-1510915933:98626..98856Clytia hemisphaericaexon
TCONS_00017300-exon-sc0000264-1510915933:98116..98384TCONS_00017300-exon-sc0000264-1510915933:98116..98384Clytia hemisphaericaexon
TCONS_00017300-exon-sc0000264-1510915933:97114..97336TCONS_00017300-exon-sc0000264-1510915933:97114..97336Clytia hemisphaericaexon
TCONS_00017300-exon-sc0000264-1510915933:96256..96487TCONS_00017300-exon-sc0000264-1510915933:96256..96487Clytia hemisphaericaexon
TCONS_00017300-exon-sc0000264-1510915933:94456..94917TCONS_00017300-exon-sc0000264-1510915933:94456..94917Clytia hemisphaericaexon
TCONS_00017300-exon-sc0000264-1491911889:99347..99489TCONS_00017300-exon-sc0000264-1491911889:99347..99489Clytia hemisphaericaexon
TCONS_00017300-exon-sc0000264-1491911889:98626..98856TCONS_00017300-exon-sc0000264-1491911889:98626..98856Clytia hemisphaericaexon
TCONS_00017300-exon-sc0000264-1491911889:98116..98384TCONS_00017300-exon-sc0000264-1491911889:98116..98384Clytia hemisphaericaexon
TCONS_00017300-exon-sc0000264-1491911889:97114..97336TCONS_00017300-exon-sc0000264-1491911889:97114..97336Clytia hemisphaericaexon
TCONS_00017300-exon-sc0000264-1491911889:96256..96487TCONS_00017300-exon-sc0000264-1491911889:96256..96487Clytia hemisphaericaexon
TCONS_00017300-exon-sc0000264-1491911889:94456..94917TCONS_00017300-exon-sc0000264-1491911889:94456..94917Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000264supercontigsc0000264:94456..99489 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0525207	0.102432	0	0	0	0	0.202571	0.087391	0.387918	0.346712	0	0.611137	0.860326	3.21712	9.82154	4.85061	0.0011185	4.23073	1.6183	3.6658	4.36286	3.45768	1.07696	0.901883	2.3055	2.4883	0	0.81833	0.965321	0.724995
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017300 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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