TCONS_00017303 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017303
Unique NameTCONS_00017303
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017303 ID=TCONS_00017303|Name=TCONS_00017303|organism=Clytia hemisphaerica|type=transcript|length=1448bp
CGAGAATTTATTGATAGATGACGATGAAGTTATCAAAGTGTCAGATTTTG
GTTTCGCCACACGTTTCCCAACCAATAAACAGAAACTTTTGGAAACATTT
TGCGGTTCATATGCTTATGCAGCTCCTGAAATTCTTCAGGCAGAAAAATA
TGATGGTAAAATTGCGGACATCTGGAGCTTGGGTGTTATTTTGTTTGCCA
TGTTGAACGGTCGATTACCTTACAACGACCGTGACATTCGAACCTTGATC
GAACAAACTAAAAGTAAACCCAGATTCTCCAGCAGAGTTAACGTCACGCC
AGAATGTCAAGACCTGGTGTGCAAAATTTTGACGACAGATCCACAAAAAC
GAGCAACATTGCAAGATATTCTTCGACATCCTTGGATGACTTCTGATAAT
GAAACTGCTGAAGAGAAAGCATCACGCGGCATACCAGACGGCAAATCCGA
CGAAATAGTGACGGATGAAGTCGGAGATGACGAGGTGACAAAATATAATT
TGCAGAATAAGAAAGTCATCAATCAACCCTACACTCAAAGAGTTTTGCAA
CGTGAGCGCTGGATGTCAAAAGCTCCTGAACCACAAGCCATTCAAAAATT
ATTACATTCTCGAACAAACAAGCTGCCTGATAAAAGCCCTGCGTCACCGG
ATGATGTCCAACAAAACGTTGAAAGTGCAGGATCTAAAAACACTAAAGGA
AGTACAAGAAAATCCGGAAAGGAGGCTGAAAAGGAGCTTTCACGATATTG
GGAAAGGCGTACCAAGAGATCACATGAACGCCCTCGTAAAGAATTGATCA
CCGGTATTTTGCCGAACCAATATAAACCAGAACCGGTTGTAAAGAAAATT
GCATTTGGagGTTCAAACAATAACTCCAACTCAAACAGCAGAGATGGTAA
CAGCACCAACAAATCACCAACAAACCAATCCTCATCCGGAACAAATTACC
GCCTTGCTCACAACAAGCGCCAACGAAGCAACTCAACTGCACCACCCCCG
CCCTCAAACACAACGGTGGCTGCAATTCTGAATAATAAGAGTGGTGATTC
ATTTATGCCTCCACAAAAAGCAGGTCGCAAAGAGTGCATGTTACCCCCAG
TTAATGCAAATAGCAGCACCATCAAAGCTAGACTCAATTCTTCATCCGGC
GGTAAATATCCACACCCGCCTTTTACACCGGAAGCCCCGAACAGCGGAAA
AGGTGGTCGTAAACAAACCCGACCGAACCCCAGACAAGCATCGGCTAATC
CAGCTAaacaattcaaaacaaaagcaatCCAAAATTTCACCTTCAATCAA
CCAGGTATGTACCCCGGAATACAAATTTCTGTGAAGCAACCTTTTTGTGG
TGTGACCATGTGACCCAGCCACGAAATTCTTCCAATTGCAAGCATTTAGA
AAATGTGATCAGTTCGTCagttactttaatcggattaactttcgcgag
Run BLAST on NCBI

transcript from alignment at sc0000264:156603..160975-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017303 ID=TCONS_00017303|Name=TCONS_00017303|organism=Clytia hemisphaerica|type=transcript|length=4373bp|location=Sequence derived from alignment at sc0000264:156603..160975- (Clytia hemisphaerica)
CGAGAATTTATTGATAGATGACGATGAAGTTATCAAAGTGTCAGGTATGA
TTTTCATATAAGTNTTATTTTTAGCGATTTGAAGTGCGAGAATTTATTGA
TAGATGACGATGAAGTTATCAAAGTGTCAGGTATGATTTTCATATAAGTT
CTGGAGTTGAGAGCGCTGAACTGGCATCATTGTTTGGGTTTGATGATATA
ATATTATCATGCCCTGAAAACGAAAAAAACCTATTGATGTACAGTTGACT
CACTATAATTCAATCCTCATGGGACCATAGATTTTCCTCGTATTAGAGAA
ACATTCGAGATATAGAGAGCATTTTATACTACTTTCTAGCTGAAGGGATC
ATTATTCTTGTTCAAATTATGGAAATATTCAAATAGTAGAGAGAATTGAG
TGTACTTTTGAATTTTGAAAATGAGGTTTCTAAAATTTAGCGACCATCTT
AGAGTCCTTCCCTTTGAACCCCAAAAGATTCTAATTGGAAAATGCCTCAA
TTCCAGCCGGTTAGAGTTGATGTTTATACCACACATACCAAACTTTCAAA
CTTTCTCTTTAGATTTTGGTTTCGCCACACGTTTCCCAACCAATAAACAG
AAACTTTTGGAAACATTTTGCGGTTCATATGCTTATGCAGCTCCTGAAAT
TCTTCAGGCAGAAAAATATGATGGTAAAATTGCGGACATCTGGAGCTTGT
AAGTATCCTTGTTGTAAATTAAAGTTTAAACCATCACATTTAAACAATAA
AACTATAGTGGCAAACGCCCGGGCTTAAGGTGCTTCCGTATAAAACATTA
CGCCATGAATATCATGAATTCTCTATGAACTTCTTCTCTCTTCCATTTAG
GGGTGTTATTTTGTTTGCCATGTTGAACGGTCGATTACCTTACAACGACC
GTGACATTCGAACCTTGATCGAACAAACTAAAAGTAAACCCAGATTCTCC
AGCAGAGTTAACGTCACGCCAGAATGTCAAGACCTGGTGTGCAAAATTTT
GACGACAGATCCACAAAAACGAGCAACATTGCAAGATATTCTTCGACATC
CTTGGATGACTTCTGATAATGAAACTGCTGAAGAGGTATATTTAAGAGTT
GCAATTCATGATATGCACCATTGCATTGCCTGTTTTCCAAAATTGCATCA
CGGGCCCAATAGCTGATTGGNTGCAATTCATGATATGCACCATTGCATTG
CCTGTTTTCCAAAATTGTATCACGGGCCCAATAGCTGATTGGTTGCAAGC
GACGTATTGACTGATTTTAAGTCACTTACAACCAATCAGCTGTTAGGTCT
ATGGTGTGATGTGGAAGAAATTGTAATGGTGTATATCATGAATATATTAT
TTCGCTTATTTTGTTTGAGATTTCATTTTAAGAACTCACCTTTTAGACTT
AGATTTTGTCAAGCAGACTGACAAAACCTCAAAGCAATGTCCATCGTTAA
CATTAAAACGATGTTAGATGAACGTTACTCAAAATGACGTTATAGCCACT
AAGTACTCCATTCGAATCTGTTCAAAATCTAAAGCTGGGATTCTTTTAAA
TTTGTTTTTAGGGTTGGGTCAAAATTAAGCCTTGTGTTACAGGTTTTTTA
AATAAGAAACCTTAACTTGGCTCCAATCCTCGGAGTAGTTCTTTATTTTT
CCATGAAATTCCAGCCTTTAAGAGTTCCATATTTACTAATAAGCCGCTAA
GTTTGAATTTGCTAAAAATGCTACTAACTTGTTTTCTCATTTTCAGTCTG
AGCAGCTCCTTAACCATTTTCAGCCTCAAATTCCTTTTTAACGTTTATAA
AAAGAAAACGTATTATAAAACAGTTCTCATTAAAAAAATCTTTTTCCACC
TTCCAGAAAGCATCACGCGGCATACCAGACGGCAAATCCGACGAAATAGT
GACGGATGAAGTCGGAGATGACGAGGTGACAAAATATAATTTGCAGAATA
AGAAAGTCATCAATCAACCCTACACTCAAAGAGGTTAGTATACCTGATGG
TTATTTCAAATGTTTCACAATTCTATTGAATTTGACTGAATTTCTTTCTT
AAACATTTTACGACCAGACTCTTCAGCTATTTTAGTAATTTTCTTTTCGT
CAATCTTTTTGATTGCAGAGTTGAAGTATTTTATACGGCAGGCTAGTTTT
GTAAACTGCCTGGGACCTAATTATAGAATTTTCATTGATTTCAAAGCCCC
TTAGGGGCTAGATCCGAAACTCTTGGATGGGAAATGAAGTCACTTATTAG
AAAAAAAACTAGTTATGGTTCAACCAACATCTTTCCTTGCGTATTATTCG
GCTTTTTGATGCTTACTGCTATGTCGTCCTTCAGTAACGTAAAAAAAGCC
TGGGATACATTGGGACGAGGAAGGGCCTCTAAAACCTTACATATAATCCT
GGGCCTCTTTTTCAGTTTTGAAAAGTTTTTCAACGTTTCATATTTTCATT
ACCTTTTACACTTAGTTTTGCAACGTGAGCGCTGGATGTCAAAAGCTCCT
GAACCACAAGCCATTCAAAAATTATTACATTCTCGAACAAACAAGCTGCC
TGATAAAAGCCCTGCGTCACCGGATGATGTCCAACAAAACGTTGAAAGTG
CAGGATCTAAAAACACTAAAGGAAGTACAAGAAAATCCGGAAAGGAGGCT
GAAAAGGAGCTTTCACGATATTGGGAAAGGCGTACCAAGAGATCACATGA
ACGCCCTCGTAAAGAATTGATCACCGGTATTTTGCCGAACCAATATAAAC
CAGAACCGGTTGTAAAGAAAATTGCATTTGGAGGTAAAATAATTTTATTT
AAATTTTGGTCAACACTCGGACTTTTGTCGGAATCCCAAAAGTATACATC
ATTGCGCAAAAATGGGTGTGTGCAAGTGTTCAAAATTCAAAAATCTCTAT
AAGGGTTACAAGAGTAAATCCACTCTCTAAAATTCTTCAAAATGACAAAA
AATGGAAAATTTTCTTAAAAAACTTTAGATCGAAATAGGTTGAAAAATCT
CTTTAAGATTCCCAGGTCAACTTGGTCTTCTCGTGCAAACACAATACACT
ATCCGACACTGAAGCCCTCGTAAAATCCTGTCTTTAATCCGAATCTTACG
CTAATTCGAATAACTTGGACACTCCGTTCAAGTTCGAATTAGCGAGGGTT
TTACTGTATATATTAACTTAATCATTTTCAATTGTCCAGGTTCAAACAAT
AACTCCAACTCAAACAGCAGAGATGGTAACAGCACCAACAAATCACCAAC
AAACCAATCCTCATCCGGAACAAATTACCGCCTTGCTCACAACAAGCGCC
AACGAAGCAACTCAACTGCACCACCCCCGCCCTCAAACACAACGGTGGCT
GCAATTCTGAATAATAAGAGTGGTGATTCATTTATGCCTCGTAAGTTTTA
AAATTTACAGTTTTTTGATACGAACCTAGAAAATTTTGGTTAAGCTTTGG
CTGTTGTTATTTTTCCAAGATTCCAAATTTAAAATGCTCATTAGTTTTAT
ATCCTTTACTCAATGACTTGTAAGGGTTTTTAAAATAATATACCGGGTGC
ACCAAAAAAAAGTATACAAATTTGAATTATGAGCTATCATACATTAGGTT
TCAAAATTCAAGTTAGAGCATCCTCTGTACAATAAAAAAAGAATGAACAA
AAGATTTTAATCCTGAAGCTCACAATATATCGACAAACCTGCATACTTTT
TTTGGTGCACCCGGTATTTTATCCTTTTCTGAAATCCAAAAGTAAGATAT
TAAGATAACTAAGATTGTTCTTAGTTTCTGCAACCTCTGCAGTCAGAAGC
GAATGATTGATCTTAATAATTTAATCAGTTCTTACAGTTCCTAGGTTCTG
GCAGAAATTGCCGTTCTGATAACCTTTGAGTTCCTAATAAGCTGCATATA
TTTTCGTCGTATAAATAAGCTGAAACACCACCAATCAACAATCGAAATTT
ATCACTATTTTCAAATATATTCATTATTATTTTCAGCACAAAAAGCAGGT
CGCAAAGAGTGCATGTTACCCCCAGTTAATGCAAATAGCAGCACCATCAA
AGCTAGACTCAATTCTTCATCCGGCGGTAAATATCCACACCCGCCTTTTA
CACCGGAAGCCCCGAACAGCGGAAAAGGTGGTCGTAAACAAACCCGACCG
AACCCCAGACAAGCATCGGCTAATCCAGCTAAACAATTCAAAACAAAAGC
AATCCAAAATTTCACCTTCAATCAACCAGGTATGTACCCCGGAATACAAA
TTTCTGTGAAGCAACCTTTTTGTGGTGTGACCATGTGACCCAGCCACGAA
ATTCTTCCAATTGCAAGCATTTAGAAAATGTGATCAGTTCGTCAGTTACT
TTAATCGGATTAACTTTCGCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009681XLOC_009681Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017303-exon-sc0000264-1575043694:160932..160975TCONS_00017303-exon-sc0000264-1575043694:160932..160975Clytia hemisphaericaexon
TCONS_00017303-exon-sc0000264-1575043694:160278..160413TCONS_00017303-exon-sc0000264-1575043694:160278..160413Clytia hemisphaericaexon
TCONS_00017303-exon-sc0000264-1575043694:159891..160125TCONS_00017303-exon-sc0000264-1575043694:159891..160125Clytia hemisphaericaexon
TCONS_00017303-exon-sc0000264-1575043694:158993..159119TCONS_00017303-exon-sc0000264-1575043694:158993..159119Clytia hemisphaericaexon
TCONS_00017303-exon-sc0000264-1575043694:158193..158510TCONS_00017303-exon-sc0000264-1575043694:158193..158510Clytia hemisphaericaexon
TCONS_00017303-exon-sc0000264-1575043694:157586..157786TCONS_00017303-exon-sc0000264-1575043694:157586..157786Clytia hemisphaericaexon
TCONS_00017303-exon-sc0000264-1575043694:156603..156989TCONS_00017303-exon-sc0000264-1575043694:156603..156989Clytia hemisphaericaexon
TCONS_00017303-exon-sc0000264-1510915933:160932..160975TCONS_00017303-exon-sc0000264-1510915933:160932..160975Clytia hemisphaericaexon
TCONS_00017303-exon-sc0000264-1510915933:160278..160413TCONS_00017303-exon-sc0000264-1510915933:160278..160413Clytia hemisphaericaexon
TCONS_00017303-exon-sc0000264-1510915933:159891..160125TCONS_00017303-exon-sc0000264-1510915933:159891..160125Clytia hemisphaericaexon
TCONS_00017303-exon-sc0000264-1510915933:158993..159119TCONS_00017303-exon-sc0000264-1510915933:158993..159119Clytia hemisphaericaexon
TCONS_00017303-exon-sc0000264-1510915933:158193..158510TCONS_00017303-exon-sc0000264-1510915933:158193..158510Clytia hemisphaericaexon
TCONS_00017303-exon-sc0000264-1510915933:157586..157786TCONS_00017303-exon-sc0000264-1510915933:157586..157786Clytia hemisphaericaexon
TCONS_00017303-exon-sc0000264-1510915933:156603..156989TCONS_00017303-exon-sc0000264-1510915933:156603..156989Clytia hemisphaericaexon
TCONS_00017303-exon-sc0000264-1491911889:160932..160975TCONS_00017303-exon-sc0000264-1491911889:160932..160975Clytia hemisphaericaexon
TCONS_00017303-exon-sc0000264-1491911889:160278..160413TCONS_00017303-exon-sc0000264-1491911889:160278..160413Clytia hemisphaericaexon
TCONS_00017303-exon-sc0000264-1491911889:159891..160125TCONS_00017303-exon-sc0000264-1491911889:159891..160125Clytia hemisphaericaexon
TCONS_00017303-exon-sc0000264-1491911889:158993..159119TCONS_00017303-exon-sc0000264-1491911889:158993..159119Clytia hemisphaericaexon
TCONS_00017303-exon-sc0000264-1491911889:158193..158510TCONS_00017303-exon-sc0000264-1491911889:158193..158510Clytia hemisphaericaexon
TCONS_00017303-exon-sc0000264-1491911889:157586..157786TCONS_00017303-exon-sc0000264-1491911889:157586..157786Clytia hemisphaericaexon
TCONS_00017303-exon-sc0000264-1491911889:156603..156989TCONS_00017303-exon-sc0000264-1491911889:156603..156989Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000264supercontigsc0000264:156603..160975 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.56878	1.3534	8.92923	7.67036	0.466971	0.981514	0.0569337	0.13906	0.320754	0.0513325	0	0.153919	0	0	0	0	0	0.0308291	0	0.204493	0	0	0.145678	0.352834	0.132061	0.458636	0	0	0.00753216	3.97942e-08
Blast
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BLAST of TCONS_00017303 vs. Swiss-Prot (Human)
Match: TSSK2 (Testis-specific serine/threonine-protein kinase 2 OS=Homo sapiens GN=TSSK2 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 7.799e-32
Identity = 66/145 (45.52%), Postives = 93/145 (64.14%), Query Frame = 2 
Query:    2 ENLLIDDDEVIKVSDFGFATRF--PTNKQKLL-ETFCGSYAYAAPEILQAEKYDGKIADIWSLGVILFAMLNGRLPYNDRDIRTLIE-QTKSKPRFSSRVNVTPECQDLVCKILTTDPQKRATLQDILRHPWMTSDNETAEEKAS 424
            ENLL+D D  IK+SDFGF+ R    +N + +L +TFCGS AYAAPE+LQ+  Y  K+ DIWSLGVIL+ M+ G +PY+D DIR ++  Q + +  F    N+T EC+DL+ ++L  D  +R  + +IL H W+      A   AS
Sbjct:  140 ENLLLDKDFNIKLSDFGFSKRCLRDSNGRIILSKTFCGSAAYAAPEVLQSIPYQPKVYDIWSLGVILYIMVCGSMPYDDSDIRKMLRIQKEHRVDFPRSKNLTCECKDLIYRMLQPDVSQRLHIDEILSHSWLQPPKPKATSSAS 284
The following BLAST results are available for this feature:
BLAST of TCONS_00017303 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSSK27.799e-3245.52Testis-specific serine/threonine-protein kinase 2 ... [more]
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