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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017313 ID=TCONS_00017313|Name=TCONS_00017313|organism=Clytia hemisphaerica|type=transcript|length=2197bp ATTTAGAATTATTGGAAGAGCAAGATGTATTCTGATacttttatcaacat tttatttattttttgttattcttcTGCAAGATTATATCCGCTGTTCAACC CAAAGGTGAATCGCACTTCTGGTAAAGTGCCAATTCATAGAAAGGAGACA GCCCTTACAATTTACACGCCACCAAGCAGATTTGGACTTTGTTCAAGCTG TAGCTATGGCAACAGACCTACTCAAATTGCTAATTTGAGCACAATCGATT TCGGATTTGAGCCGAAAGAAGCCGTATATTTTAATTCAAAACTGGTTATC GAGACATATGAAGAAACCTTCGATGCAAAAGGATTCTTAGATGGACTAAA TGAATCTGGTAAACTCTCGGCAAAGGTCAATTTGGAAGTCAATGATAAGG GTGCTTCTGATAAAAATTACAATGATGAGCCATCCACTTCATCAAAGAAG GATGATAACTCTGGCAAGAAGccgaaaactttttttgatggTACCGTTGT GTTGACAGATCCGGTGGAAAATACCGGTGGTCGGATCCACAAAAAACATC CTTCATATCAACCACCAAATGCAGCCAATGATGATTTTGATTACGGAGAT TCCACATCATGGCATATTGATTATATTGGACAATTGTTTATagatttcat tgattttattCATGAGCCGTTATCTGCGGAAGTGACTAAATATGAATGgt tttattttccaattttcgaaaaggcTGGACCCTACTTAAGCTGGTTTTAT GAGGAAATCTTGGAGCCCCTTTTAGACCTCGTCCTCGAAGTAGATTGGCA AGGCATTTACAACAGTGTTTTAAACAAATTGCGGCGCTTAGATTGGATGT ATGAGCCAGCATACGAAAATTTGAAGGCTTACGTTTTTAAGCCCATCAAG GAATGTATAAACCGTATTGACTGGCAAAATAAATGTTCACAATTTGTCGA TTTTTGTCGACCGTATTTTAGAGCTATCATCGCTTTTTTCCGTGGCATCA ATTATATTAGAGCTTACAATCGATTGGTTGATGTAATCCATCGCTTTGAG TGGTTCTATGGACCTGTTATGGACTATGTGTATAGCATTGATTATCATGG CTATTGGAACAAGTTTTGCAACAAGGTTGAACCCTACTTACAGTGTGTCA TCAACTACTTGGAAAGTATCGACTACGTTGGAATCTATGACGGACTTAAG GAAAAAATATGTACACTAGAATGGCTGTATGGACCAGCCATAAACTTTTT CTACAATATTGactaccaaaaaattggcctgaaaatttgtaattttttcg aGTTTTATGTCGTACCATTTTGCGATTACGTTATTAGAATCGATTACGTC GGTGCGTATAATCAGACCACTGGTAAGATTAATGAAGTTGGTTCAACGTT TTCAAACACTAATGGTACATATTATGTACGTTTTATGGCTGCAATGAAGA AAATCGATTGGAATACCGCTTACAAACAATACAGAGCTTTTACCTTCAAA GTCTTCACAAAGTTTATTATACCAGCTTTTGGATGTGTAAATGACATTGT TCTTAACTCCATTTATAAACCAACTCGAGAATACTTAATTGGAATTGATT GGAACGAattatttttagtattttcgGATATGTATGGACCGTACTACCGA CCGCCTCTAACTTTCGCTAAGAAAGTTTGTGTTGCGATTATTCCTGACTC GATTTCAACAGCGTTTTCGAACTATACGAAAAACATAGACTATGATTTTC TTTATCGAATACTCGAAAAACATTCCGAATCTAACCGTAAACTCAGTTTA AAAGTTGCGAGCGTATTTGATTATAAGTCATTGGACGCTGATGATCTCGG TGATCTTGAAGATCTGGTTGAATTATATGAACGAATAACAACCTACCTAT CCCAAATTAATGTCCGCGAGTCCTTTTACAGTCTTTATAATCAAGTATCG TTGTCACAGCTGAACGCCCTATTCACTGATATGAAAGTCATCCTTGAAGA TACGGAAAAACTTATCGAACTGTATATAGCACTGGCACAATTCTTAACCA TTTGTTTTTGGATAAATCTACTTTGGACTCGTTTCATTTGCCCGCCGGAA GAATGTTACTTCTGTTAactaatttatttatttgttgatatattatatag taaaaaacgTAATTTTGCGTATCTACTTTCTTGCTTATTGTTCCGTA Run BLAST on NCBI protein sequence of TCONS_00017313-protein >TCONS_00017313-protein ID=TCONS_00017313-protein|Name=TCONS_00017313-protein|organism=Clytia hemisphaerica|type=polypeptide|length=697bp
MYSDTFINILFIFCYSSARLYPLFNPKVNRTSGKVPIHRKETALTIYTPP SRFGLCSSCSYGNRPTQIANLSTIDFGFEPKEAVYFNSKLVIETYEETFD AKGFLDGLNESGKLSAKVNLEVNDKGASDKNYNDEPSTSSKKDDNSGKKP KTFFDGTVVLTDPVENTGGRIHKKHPSYQPPNAANDDFDYGDSTSWHIDY IGQLFIDFIDFIHEPLSAEVTKYEWFYFPIFEKAGPYLSWFYEEILEPLL DLVLEVDWQGIYNSVLNKLRRLDWMYEPAYENLKAYVFKPIKECINRIDW QNKCSQFVDFCRPYFRAIIAFFRGINYIRAYNRLVDVIHRFEWFYGPVMD YVYSIDYHGYWNKFCNKVEPYLQCVINYLESIDYVGIYDGLKEKICTLEW LYGPAINFFYNIDYQKIGLKICNFFEFYVVPFCDYVIRIDYVGAYNQTTG KINEVGSTFSNTNGTYYVRFMAAMKKIDWNTAYKQYRAFTFKVFTKFIIP AFGCVNDIVLNSIYKPTREYLIGIDWNELFLVFSDMYGPYYRPPLTFAKK VCVAIIPDSISTAFSNYTKNIDYDFLYRILEKHSESNRKLSLKVASVFDY KSLDADDLGDLEDLVELYERITTYLSQINVRESFYSLYNQVSLSQLNALF TDMKVILEDTEKLIELYIALAQFLTICFWINLLWTRFICPPEECYFC Run BLAST on NCBI transcript from alignment at sc0000264:301273..304114- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017313 ID=TCONS_00017313|Name=TCONS_00017313|organism=Clytia hemisphaerica|type=transcript|length=2842bp|location=Sequence derived from alignment at sc0000264:301273..304114- (Clytia hemisphaerica) ATTTAGAATTATTGGAAGAGCAAGATGTATTCTGATACTTTTATCAACAT
TTTATTTATTTTTTGTTATTCTTCTGCAAGATTATATCCGCTGTTCAACC
CAAAGGTGAATCGCACTTCTGGTAAAGGTACAACGTTTGATTTGATATAA
CTTTTAACCAGTCTTTTGCTCAAAAAACTTTTGTTCTATTTTTTTCTTCT
ATTTGGTTGAGTCGCAAGAGGCTTTGAGGCCCATTTTCGCAACTATAAGC
GCTTTCAATTAGCGTCCTGTTAGCACCTTGAACTGACTACCCGATTCCCC
TCACATTGACCCGTGTGAAGGTTCATTCACTTGGTAAGTGAACTGCTGCG
AGTGGGAATCGTACCTCAGCCGTCTGTGCAGCAACCAAGGCCAATGACCA
CTATACCACAGCGCCTCCACTGTATCAGCTAAAATAAGAGCCGGCATAGT
CTCTAAATGGTGCTCTTCCAAAAAAAAATCCATGGTTGTTTAAAAGTGTC
CTCTAAAACAGAAATCTCAATTACTTAGAAAACCAAGTTGAAGATTCGAT
GAAAAAAAGATTTTTATTTCTGAGAACTCCCAGAAGTAAACAGGCTAACC
TGATTACTACTAACCCCACTTTGAACTTAGAATGCCTACACTTTTGTTGG
AATTCTTAAAAATTTGAACCCTTTACATTGTAGTAACATTACAGGGCTTT
ACATTGTGGGTCATACACATTGGTTTGGTTGGACAATGAGAGTTTCTAAT
GCTTTTTTCTCTCTTGTTTTAGTGCCAATTCATAGAAAGGAGACAGCCCT
TACAATTTACACGCCACCAAGCAGATTTGGACTTTGTTCAAGCTGTAGCT
ATGGCAACAGACCTACTCAAATTGCTAATTTGAGCACAATCGATTTCGGA
TTTGAGCCGAAAGAAGCCGTATATTTTAATTCAAAACTGGTTATCGAGAC
ATATGAAGAAACCTTCGATGCAAAAGGATTCTTAGATGGACTAAATGAAT
CTGGTAAACTCTCGGCAAAGGTCAATTTGGAAGTCAATGATAAGGGTGCT
TCTGATAAAAATTACAATGATGAGCCATCCACTTCATCAAAGAAGGATGA
TAACTCTGGCAAGAAGCCGAAAACTTTTTTTGATGGTACCGTTGTGTTGA
CAGATCCGGTGGAAAATACCGGTGGTCGGATCCACAAAAAACATCCTTCA
TATCAACCACCAAATGCAGCCAATGATGATTTTGATTACGGAGATTCCAC
ATCATGGCATATTGATTATATTGGACAATTGTTTATAGATTTCATTGATT
TTATTCATGAGCCGTTATCTGCGGAAGTGACTAAATATGAATGGTTTTAT
TTTCCAATTTTCGAAAAGGCTGGACCCTACTTAAGCTGGTTTTATGAGGA
AATCTTGGAGCCCCTTTTAGACCTCGTCCTCGAAGTAGATTGGCAAGGCA
TTTACAACAGTGTTTTAAACAAATTGCGGCGCTTAGATTGGATGTATGAG
CCAGCATACGAAAATTTGAAGGCTTACGTTTTTAAGCCCATCAAGGAATG
TATAAACCGTATTGACTGGCAAAATAAATGTTCACAATTTGTCGATTTTT
GTCGACCGTATTTTAGAGCTATCATCGCTTTTTTCCGTGGCATCAATTAT
ATTAGAGCTTACAATCGATTGGTTGATGTAATCCATCGCTTTGAGTGGTT
CTATGGACCTGTTATGGACTATGTGTATAGCATTGATTATCATGGCTATT
GGAACAAGTTTTGCAACAAGGTTGAACCCTACTTACAGTGTGTCATCAAC
TACTTGGAAAGTATCGACTACGTTGGAATCTATGACGGACTTAAGGAAAA
AATATGTACACTAGAATGGCTGTATGGACCAGCCATAAACTTTTTCTACA
ATATTGACTACCAAAAAATTGGCCTGAAAATTTGTAATTTTTTCGAGTTT
TATGTCGTACCATTTTGCGATTACGTTATTAGAATCGATTACGTCGGTGC
GTATAATCAGACCACTGGTAAGATTAATGAAGTTGGTTCAACGTTTTCAA
ACACTAATGGTACATATTATGTACGTTTTATGGCTGCAATGAAGAAAATC
GATTGGAATACCGCTTACAAACAATACAGAGCTTTTACCTTCAAAGTCTT
CACAAAGTTTATTATACCAGCTTTTGGATGTGTAAATGACATTGTTCTTA
ACTCCATTTATAAACCAACTCGAGAATACTTAATTGGAATTGATTGGAAC
GAATTATTTTTAGTATTTTCGGATATGTATGGACCGTACTACCGACCGCC
TCTAACTTTCGCTAAGAAAGTTTGTGTTGCGATTATTCCTGACTCGATTT
CAACAGCGTTTTCGAACTATACGAAAAACATAGACTATGATTTTCTTTAT
CGAATACTCGAAAAACATTCCGAATCTAACCGTAAACTCAGTTTAAAAGT
TGCGAGCGTATTTGATTATAAGTCATTGGACGCTGATGATCTCGGTGATC
TTGAAGATCTGGTTGAATTATATGAACGAATAACAACCTACCTATCCCAA
ATTAATGTCCGCGAGTCCTTTTACAGTCTTTATAATCAAGTATCGTTGTC
ACAGCTGAACGCCCTATTCACTGATATGAAAGTCATCCTTGAAGATACGG
AAAAACTTATCGAACTGTATATAGCACTGGCACAATTCTTAACCATTTGT
TTTTGGATAAATCTACTTTGGACTCGTTTCATTTGCCCGCCGGAAGAATG
TTACTTCTGTTAACTAATTTATTTATTTGTTGATATATTATATAGTAAAA
AACGTAATTTTGCGTATCTACTTTCTTGCTTATTGTTCCGTA Coding sequence (CDS) from alignment at sc0000264:301273..304114- >TCONS_00017313 ID=TCONS_00017313|Name=TCONS_00017313|organism=Clytia hemisphaerica|type=CDS|length=4188bp|location=Sequence derived from alignment at sc0000264:301273..304114- (Clytia hemisphaerica) TGCCAATTCATAGAAAGGAGACAGCCCTTACAATTTACACGCCACCAAGC AGATTTGGACTTTGTTCAAGCTGTAGCTATGGCAACAGACCTACTCAAAT TGCTAATTTGAGCACAATCGATTTCGGATTTGAGCCGAAAGAAGCCGTAT ATTTTAATTCAAAACTGGTTATCGAGACATATGAAGAAACCTTCGATGCA AAAGGATTCTTAGATGGACTAAATGAATCTGGTAAACTCTCGGCAAAGGT CAATTTGGAAGTCAATGATAAGGGTGCTTCTGATAAAAATTACAATGATG AGCCATCCACTTCATCAAAGAAGGATGATAACTCTGGCAAGAAGCCGAAA ACTTTTTTTGATGGTACCGTTGTGTTGACAGATCCGGTGGAAAATACCGG TGGTCGGATCCACAAAAAACATCCTTCATATCAACCACCAAATGCAGCCA ATGATGATTTTGATTACGGAGATTCCACATCATGGCATATTGATTATATT GGACAATTGTTTATAGATTTCATTGATTTTATTCATGAGCCGTTATCTGC GGAAGTGACTAAATATGAATGGTTTTATTTTCCAATTTTCGAAAAGGCTG GACCCTACTTAAGCTGGTTTTATGAGGAAATCTTGGAGCCCCTTTTAGAC CTCGTCCTCGAAGTAGATTGGCAAGGCATTTACAACAGTGTTTTAAACAA ATTGCGGCGCTTAGATTGGATGTATGAGCCAGCATACGAAAATTTGAAGG CTTACGTTTTTAAGCCCATCAAGGAATGTATAAACCGTATTGACTGGCAA AATAAATGTTCACAATTTGTCGATTTTTGTCGACCGTATTTTAGAGCTAT CATCGCTTTTTTCCGTGGCATCAATTATATTAGAGCTTACAATCGATTGG TTGATGTAATCCATCGCTTTGAGTGGTTCTATGGACCTGTTATGGACTAT GTGTATAGCATTGATTATCATGGCTATTGGAACAAGTTTTGCAACAAGGT TGAACCCTACTTACAGTGTGTCATCAACTACTTGGAAAGTATCGACTACG TTGGAATCTATGACGGACTTAAGGAAAAAATATGTACACTAGAATGGCTG TATGGACCAGCCATAAACTTTTTCTACAATATTGACTACCAAAAAATTGG CCTGAAAATTTGTAATTTTTTCGAGTTTTATGTCGTACCATTTTGCGATT ACGTTATTAGAATCGATTACGTCGGTGCGTATAATCAGACCACTGGTAAG ATTAATGAAGTTGGTTCAACGTTTTCAAACACTAATGGTACATATTATGT ACGTTTTATGGCTGCAATGAAGAAAATCGATTGGAATACCGCTTACAAAC AATACAGAGCTTTTACCTTCAAAGTCTTCACAAAGTTTATTATACCAGCT TTTGGATGTGTAAATGACATTGTTCTTAACTCCATTTATAAACCAACTCG AGAATACTTAATTGGAATTGATTGGAACGAATTATTTTTAGTATTTTCGG ATATGTATGGACCGTACTACCGACCGCCTCTAACTTTCGCTAAGAAAGTT TGTGTTGCGATTATTCCTGACTCGATTTCAACAGCGTTTTCGAACTATAC GAAAAACATAGACTATGATTTTCTTTATCGAATACTCGAAAAACATTCCG AATCTAACCGTAAACTCAGTTTAAAAGTTGCGAGCGTATTTGATTATAAG TCATTGGACGCTGATGATCTCGGTGATCTTGAAGATCTGGTTGAATTATA TGAACGAATAACAACCTACCTATCCCAAATTAATGTCCGCGAGTCCTTTT ACAGTCTTTATAATCAAGTATCGTTGTCACAGCTGAACGCCCTATTCACT GATATGAAAGTCATCCTTGAAGATACGGAAAAACTTATCGAACTGTATAT AGCACTGGCACAATTCTTAACCATTTGTTTTTGGATAAATCTACTTTGGA CTCGTTTCATTTGCCCGCCGGAAGAATGTTACTTCTGTTAAATGTATTCT GATACTTTTATCAACATTTTATTTATTTTTTGTTATTCTTCTGCAAGATT ATATCCGCTGTTCAACCCAAAGGTGAATCGCACTTCTGGTAAAGTGCCAA TTCATAGAAAGGAGACAGCCCTTACAATTTACACGCCACCAAGCAGATTT GGACTTTGTTCAAGCTGTAGCTATGGCAACAGACCTACTCAAATTGCTAA TTTGAGCACAATCGATTTCGGATTTGAGCCGAAAGAAGCCGTATATTTTA ATTCAAAACTGGTTATCGAGACATATGAAGAAACCTTCGATGCAAAAGGA TTCTTAGATGGACTAAATGAATCTGGTAAACTCTCGGCAAAGGTCAATTT GGAAGTCAATGATAAGGGTGCTTCTGATAAAAATTACAATGATGAGCCAT CCACTTCATCAAAGAAGGATGATAACTCTGGCAAGAAGCCGAAAACTTTT TTTGATGGTACCGTTGTGTTGACAGATCCGGTGGAAAATACCGGTGGTCG GATCCACAAAAAACATCCTTCATATCAACCACCAAATGCAGCCAATGATG ATTTTGATTACGGAGATTCCACATCATGGCATATTGATTATATTGGACAA TTGTTTATAGATTTCATTGATTTTATTCATGAGCCGTTATCTGCGGAAGT GACTAAATATGAATGGTTTTATTTTCCAATTTTCGAAAAGGCTGGACCCT ACTTAAGCTGGTTTTATGAGGAAATCTTGGAGCCCCTTTTAGACCTCGTC CTCGAAGTAGATTGGCAAGGCATTTACAACAGTGTTTTAAACAAATTGCG GCGCTTAGATTGGATGTATGAGCCAGCATACGAAAATTTGAAGGCTTACG TTTTTAAGCCCATCAAGGAATGTATAAACCGTATTGACTGGCAAAATAAA TGTTCACAATTTGTCGATTTTTGTCGACCGTATTTTAGAGCTATCATCGC TTTTTTCCGTGGCATCAATTATATTAGAGCTTACAATCGATTGGTTGATG TAATCCATCGCTTTGAGTGGTTCTATGGACCTGTTATGGACTATGTGTAT AGCATTGATTATCATGGCTATTGGAACAAGTTTTGCAACAAGGTTGAACC CTACTTACAGTGTGTCATCAACTACTTGGAAAGTATCGACTACGTTGGAA TCTATGACGGACTTAAGGAAAAAATATGTACACTAGAATGGCTGTATGGA CCAGCCATAAACTTTTTCTACAATATTGACTACCAAAAAATTGGCCTGAA AATTTGTAATTTTTTCGAGTTTTATGTCGTACCATTTTGCGATTACGTTA TTAGAATCGATTACGTCGGTGCGTATAATCAGACCACTGGTAAGATTAAT GAAGTTGGTTCAACGTTTTCAAACACTAATGGTACATATTATGTACGTTT TATGGCTGCAATGAAGAAAATCGATTGGAATACCGCTTACAAACAATACA GAGCTTTTACCTTCAAAGTCTTCACAAAGTTTATTATACCAGCTTTTGGA TGTGTAAATGACATTGTTCTTAACTCCATTTATAAACCAACTCGAGAATA CTTAATTGGAATTGATTGGAACGAATTATTTTTAGTATTTTCGGATATGT ATGGACCGTACTACCGACCGCCTCTAACTTTCGCTAAGAAAGTTTGTGTT GCGATTATTCCTGACTCGATTTCAACAGCGTTTTCGAACTATACGAAAAA CATAGACTATGATTTTCTTTATCGAATACTCGAAAAACATTCCGAATCTA ACCGTAAACTCAGTTTAAAAGTTGCGAGCGTATTTGATTATAAGTCATTG GACGCTGATGATCTCGGTGATCTTGAAGATCTGGTTGAATTATATGAACG AATAACAACCTACCTATCCCAAATTAATGTCCGCGAGTCCTTTTACAGTC TTTATAATCAAGTATCGTTGTCACAGCTGAACGCCCTATTCACTGATATG AAAGTCATCCTTGAAGATACGGAAAAACTTATCGAACTGTATATAGCACT GGCACAATTCTTAACCATTTGTTTTTGGATAAATCTACTTTGGACTCGTT TCATTTGCCCGCCGGAAGAATGTTACTTCTGTTAAATGTATTCTGATACT TTTATCAACATTTTATTTATTTTTTGTTATTCTTCTGCAAGATTATATCC GCTGTTCAACCCAAAGGTGAATCGCACTTCTGGTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00017313-exon-sc0000264-1575043694:303988..304114 | TCONS_00017313-exon-sc0000264-1575043694:303988..304114 | Clytia hemisphaerica | exon |
TCONS_00017313-exon-sc0000264-1575043694:301273..303342 | TCONS_00017313-exon-sc0000264-1575043694:301273..303342 | Clytia hemisphaerica | exon |
TCONS_00017313-exon-sc0000264-1510915933:303988..304114 | TCONS_00017313-exon-sc0000264-1510915933:303988..304114 | Clytia hemisphaerica | exon |
TCONS_00017313-exon-sc0000264-1510915933:301273..303342 | TCONS_00017313-exon-sc0000264-1510915933:301273..303342 | Clytia hemisphaerica | exon |
TCONS_00017313-exon-sc0000264-1491911889:303988..304114 | TCONS_00017313-exon-sc0000264-1491911889:303988..304114 | Clytia hemisphaerica | exon |
TCONS_00017313-exon-sc0000264-1491911889:301273..303342 | TCONS_00017313-exon-sc0000264-1491911889:301273..303342 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000264 | supercontig | sc0000264:301273..304114 - |
Blast
The following BLAST results are available for this feature:
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