TCONS_00017315 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017315
Unique NameTCONS_00017315
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length981

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017315 ID=TCONS_00017315|Name=TCONS_00017315|organism=Clytia hemisphaerica|type=transcript|length=981bp
ctttttcaatagaaaactCCAACTCTTTGTTAGGGTGGTAATGGTTATGG
TAGgtataaaatgtaattttttcttcCAGCCAGCTTCCTCCTTTTCTGCT
TTCTCCTTTTCTGAAACCAAACTCATTTGTGGAGCAATCTCCTTCTTCTC
GGAAACAACACCAAATCGGCAATCAAGAAACAGCGGGAATTCCATTTTTA
GCTTTGATTGTCCACttggttcattcaaaaaaaaatagcaaacatGGCTG
ACAAGGCGATAGGTGCAAAGATGCAAGATGAACTCGTTCTAAATGCAATT
TTCAACCCTCATAATCCATTGCAAATCGAAGAAAGTGGTTCTGAACAGCC
AGGATGTGATCCTTCTCAAGATGAGGTTACTGATGATATCAAAAAGATTG
AAATTGCTGCAGTAAACTATGCTCAAAAAGGAGATTTTGAAGGAAGTTTG
AATCAGTTCAATAAAGTCGTAAAGCTTGCACCAAGTTATGCATCTGGATA
CAATAACAGAGCCCAATTATTCAGATTAAAaggtgaaaatgaaagtgcaa
TGAATGATTTGAACAAAGCCATCGAACTCAGTCAAGGGAAAGGATATGCT
GCGTCCCAAGCATTCGTCCAAAGAGCACTAATCAGCAGGCTCAATAAAGA
CAATGAAACTGCTCTGGAAGATTTCCAAAAAGCTGCAAAACTTGGGAATG
CTTTTGCTAAGCAACAGATCACTGAAATGAACCCTTATGCAGCTTTATGC
AATCAAATGTTGTGTGAAGTTTTTGCTAAAGAATTCAACCCTCCAGTCAA
CAAAGAATgaacatttttctgttttgGTTTTTAATTTATCAGTCAACTGA
TTTCCAGGAATTTTTATTGCTTTAACGTTACTTATctttttttatgtaaa
aactgtagaattttaaacatattttttagatatttatacccaattttttt
aATAGAATAAAAAGTCCTCCTCTAACTTGGG
Run BLAST on NCBI

protein sequence of TCONS_00017315-protein

>TCONS_00017315-protein ID=TCONS_00017315-protein|Name=TCONS_00017315-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MADKAIGAKMQDELVLNAIFNPHNPLQIEESGSEQPGCDPSQDEVTDDIK
KIEIAAVNYAQKGDFEGSLNQFNKVVKLAPSYASGYNNRAQLFRLKGENE
SAMNDLNKAIELSQGKGYAASQAFVQRALISRLNKDNETALEDFQKAAKL
GNAFAKQQITEMNPYAALCNQMLCEVFAKEFNPPVNKE
Run BLAST on NCBI

transcript from alignment at sc0000264:312201..315042-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017315 ID=TCONS_00017315|Name=TCONS_00017315|organism=Clytia hemisphaerica|type=transcript|length=2842bp|location=Sequence derived from alignment at sc0000264:312201..315042- (Clytia hemisphaerica)
CTTTTTCAATAGAAAACTCCAACTCTTTGTTAGGGTGGTAATGGTTATGG
TAGGTATAAAATGTAATTTTTTCTTCCAGCCAGCTTCCTCCTTTTCTGCT
TTCTCCTTTTCTGAAACCAAACTCATTTGTGGAGCAATCTCCTTCTTCTC
GGAAACAACACCAAATCGGCAATCAAGAAACAGCGGGAATTCCATTTTTA
GCTTTGATTGTCCACTTGGTTCATTCAAAAAAAAATAGCAAACATGGCTG
ACAAGGCGATAGGTGCAAAGATGCAAGATGAACTCGTTCTAAATGCAATT
TTCAACCCTCATAATCCATTGCAAATCGAAGAAAGTGGTTCTGAACAGCC
AGGATGTGATCCTTCTCAAGATGAGGTTACTGATGATATCAAAAAGATTG
AAATTGCTGCAGTAAACTATGCTCAAAAAGGAGATTTTGAAGGAAGTTTG
AATCAGTTCAATAAAGTCGTAAAGCTTGCACCAAGTTATGCATCTGGATA
CAATAACAGAGCCCAATTATTCAGATTAAAAGGTATCAAAAATATTTTAC
AACAGCAAGAGTTCAGTTTATTTTAGGAATGGGTCCTTTGTTCTGTCATC
TGTAACTTTGTGTAATATCATGGAGGTAATAAAGATATAGATGGAGAGTC
AATGCCTTTTGCTCTATTCTGATTTATCATCGGAACAGCTGTTTGGTTGC
TTTGGGAATAAGATGATTAATTTTGGGCATACTCATGGGAATATTTAAGA
TGAATGAAAAGACATTACATTTTAACAGATTTTTAACAAAGTATATTGAA
ATAAAATAGCCTTGTCATGAAAAATTGAAAAAAACTTCACATAATAAGCA
CAATACTCCAAACTTCTAGGGGAAGCTTCCCATAAAGCCATCGATAGATT
TAAAAAAGAATTACGTGTTACGATTAGGAACCTTGTATCGATCATTTTGT
CAGAGTATGACAACCGCTGCCCACTTAGACGTGAAGATTTTAAGATAAGA
AACTTTCAATAATAATTTGACGCAACTCTCAATGTTAACAAAATGCCAGC
CCAAAAATGTGTCCTTATGAAATTAATATACTCTTTTAGTCTACATCAGT
TGAAACTATCGCATTTTAACAAGGGTTTTCGGCAAAATTAAGTTTTTCAA
AATCAACCAAACAGTCTCTTTTTCTTCTTATAAAGTTATAAATTGATGTT
TTTTGCTTCCAATGATGGTACATCAAAGAAAAGCCGCTTTGAATAGATTT
ATAAAAGATTTCAACGACCATTTAGATCATTACCGAGACGTTTTCTCTCC
ATCTATATCCAATCTACCTGCACCAAGCTCTATAATAGAGCGTAGACACG
CATCATCAACTTACCGTAAAAATTCTTTCTCAAGCTCTAAAAACTTTCAA
AACTACTAAAAACGACCCTTTGAGAGCTACAGTACTATTTTTCTCAAATT
TTATCCTAATTACAAGAATCTATGACCTTTTGAGGGAGTTGATTTTTGAC
ATTTCGTATTTTTTGGTCCCTTTCGGAGACTCAATTACTAATTTTATGGT
TTTTGTAACCCTTTGAGAGACTTTCAAGAGTGTGGAAAAAGACTTTATGG
CGTACACATACTGACACCTTTTTAGCACCAAGTACCCCTCTGGTCATTGG
ACATGGGGAACCTTTTTCGCCTACTTTCAGTCCTGGGTACACATTTTTAG
TTTCCATCAGACTATTTAGCTTGTTTCAAGCAAACGAGAAAAAAAAGATT
TTCTTTCAGGTTTTCACCATATATCCTCTTTTTTGCCTTCTTATCATTTT
ATCTATTTAATATGTCACTATACTGTCTGGCCCTGAAAGAGTTACTATCA
GAAAATGTTATTGTTTGTTATAATTATATGCTTCAGTTTTATTTTCTATC
AACTTTAATCCTCCAACATCTTTTAACAAAATACATATCCTAACAAGGAA
CAATATCCATTCTTAGTTTTGTGATCTTGCCTTTTCATGATATAGAAAAA
TAAATAAAGAATTATTTTCTTGGCAGTTGTAAATATACTGTATATATATC
ACTTAATTTATGATGACTTTTTAAAAAGAAGGGTTTGTTTTATGGCATTC
TAAAGTTACTTTAGAACGCCATGGTATGTTTTCATACTTTTCAATTTTGA
GTGTTTTCACTGATTCTTGTAAATTGTAAACTGTCATGATAAATCGGGAA
TATATCAAAGCTTTCGAGCTTTTAATGTTTGATATATAGTATGCGGCAGC
AGAGTATGCATTACCGACAAGTCCTAATAAGGACGAAATGTATATGCTAC
TCTGCCACCCAAATCTCCTGAAAGAAGATGTTTGACAGAAACTCTTTAAA
TTTCTTCACATATACCAGCATATACTGTATTTTTTTATTACAGGTGAAAA
TGAAAGTGCAATGAATGATTTGAACAAAGCCATCGAACTCAGTCAAGGGA
AAGGATATGCTGCGTCCCAAGCATTCGTCCAAAGAGCACTAATCAGCAGG
CTCAATAAAGACAATGAAACTGCTCTGGAAGATTTCCAAAAAGCTGCAAA
ACTTGGGAATGCTTTTGCTAAGCAACAGATCACTGAAATGAACCCTTATG
CAGCTTTATGCAATCAAATGTTGTGTGAAGTTTTTGCTAAAGAATTCAAC
CCTCCAGTCAACAAAGAATGAACATTTTTCTGTTTTGGTTTTTAATTTAT
CAGTCAACTGATTTCCAGGAATTTTTATTGCTTTAACGTTACTTATCTTT
TTTTATGTAAAAACTGTAGAATTTTAAACATATTTTTTAGATATTTATAC
CCAATTTTTTTAATAGAATAAAAAGTCCTCCTCTAACTTGGG

Coding sequence (CDS) from alignment at sc0000264:312201..315042-

>TCONS_00017315 ID=TCONS_00017315|Name=TCONS_00017315|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at sc0000264:312201..315042- (Clytia hemisphaerica)
GTGAAAATGAAAGTGCAATGAATGATTTGAACAAAGCCATCGAACTCAGT
CAAGGGAAAGGATATGCTGCGTCCCAAGCATTCGTCCAAAGAGCACTAAT
CAGCAGGCTCAATAAAGACAATGAAACTGCTCTGGAAGATTTCCAAAAAG
CTGCAAAACTTGGGAATGCTTTTGCTAAGCAACAGATCACTGAAATGAAC
CCTTATGCAGCTTTATGCAATCAAATGTTGTGTGAAGTTTTTGCTAAAGA
ATTCAACCCTCCAGTCAACAAAGAATGAATGGCTGACAAGGCGATAGGTG
CAAAGATGCAAGATGAACTCGTTCTAAATGCAATTTTCAACCCTCATAAT
CCATTGCAAATCGAAGAAAGTGGTTCTGAACAGCCAGGATGTGATCCTTC
TCAAGATGAGGTTACTGATGATATCAAAAAGATTGAAATTGCTGCAGTAA
ACTATGCTCAAAAAGGAGATTTTGAAGGAAGTTTGAATCAGTTCAATAAA
GTCGTAAAGCTTGCACCAAGTTATGCATCTGGATACAATAACAGAGCCCA
ATTATTCAGATTAAAAGGTGAAAATGAAAGTGCAATGAATGATTTGAACA
AAGCCATCGAACTCAGTCAAGGGAAAGGATATGCTGCGTCCCAAGCATTC
GTCCAAAGAGCACTAATCAGCAGGCTCAATAAAGACAATGAAACTGCTCT
GGAAGATTTCCAAAAAGCTGCAAAACTTGGGAATGCTTTTGCTAAGCAAC
AGATCACTGAAATGAACCCTTATGCAGCTTTATGCAATCAAATGTTGTGT
GAAGTTTTTGCTAAAGAATTCAACCCTCCAGTCAACAAAGAATGAATGGC
TGACAAGGCGATAGGTGCAAAGATGCAAGATGAACTCGTTCTAAATGCAA
TTTTCAACCCTCATAATCCATTGCAAATCGAAGAAAGTGGTTCTGAACAG
CCAGGATGTGATCCTTCTCAAGATGAGGTTACTGATGATATCAAAAAGAT
TGAAATTGCTGCAGTAAACTATGCTCAAAAAGGAGATTTTGAAGGAAGTT
TGAATCAGTTCAATAAAGTCGTAAAGCTTGCACCAAGTTATGCATCTGGA
TACAATAACAGAGCCCAATTATTCAGATTAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009690XLOC_009690Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017315-proteinTCONS_00017315-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017315-exon-sc0000264-1575043694:314511..315042TCONS_00017315-exon-sc0000264-1575043694:314511..315042Clytia hemisphaericaexon
TCONS_00017315-exon-sc0000264-1575043694:312201..312649TCONS_00017315-exon-sc0000264-1575043694:312201..312649Clytia hemisphaericaexon
TCONS_00017315-exon-sc0000264-1510915933:314511..315042TCONS_00017315-exon-sc0000264-1510915933:314511..315042Clytia hemisphaericaexon
TCONS_00017315-exon-sc0000264-1510915933:312201..312649TCONS_00017315-exon-sc0000264-1510915933:312201..312649Clytia hemisphaericaexon
TCONS_00017315-exon-sc0000264-1491911889:314511..315042TCONS_00017315-exon-sc0000264-1491911889:314511..315042Clytia hemisphaericaexon
TCONS_00017315-exon-sc0000264-1491911889:312201..312649TCONS_00017315-exon-sc0000264-1491911889:312201..312649Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000264supercontigsc0000264:312201..315042 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
50.1447	46.7385	11.1508	5.72547	27.6452	20.507	9.57538	10.0243	16.2981	13.8612	12.4174	14.4	12.7981	11.0582	11.0785	10.5315	20.1621	21.9094	10.1996	17.0386	24.9284	23.6543	71.4111	60.7554	17.0274	17.7014	86.4008	69.1977	34.1057	42.435
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00017315 vs. Swiss-Prot (Human)
Match: TTC36 (Tetratricopeptide repeat protein 36 OS=Homo sapiens GN=TTC36 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.032e-37
Identity = 72/186 (38.71%), Postives = 107/186 (57.53%), Query Frame = 1 
Query:  277 DELVLNAIFNPHNPLQIEESGSEQPGCDPSQDEVT--------------DDIKKIEIAAVNYAQKGDFEGSLNQFNKVVKLAPSYASGYNNRAQLFRLKGENESAMNDLNKAIELSQGKGYAASQAFVQRALISRLNKDNETALEDFQKAAKLGNAFAKQQITEMNPYAALCNQMLCEVFAKEFNP 792
            D+ VL AIFNP  P        +  G D  ++                 +  K +E+  V  A+ GD   +L +F + + L P  AS YNNRAQ  RL+G+   A+ DL +A+ELS G+G AA Q+FVQR L++RL   ++ A  DF++AA+LG+ FA++Q+  +NPYAALCN+ML ++  +   P
Sbjct:    6 DQAVLQAIFNPDTPF------GDIVGLDLGEEAEKEEREEDEVFPQAQLEQSKALELQGVMAAEAGDLSTALERFGQAICLLPERASAYNNRAQARRLQGDVAGALEDLERAVELSGGRGRAARQSFVQRGLLARLQGRDDDARRDFERAARLGSPFARRQLVLLNPYAALCNRMLADMMGQLRRP 185
The following BLAST results are available for this feature:
BLAST of TCONS_00017315 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTC361.032e-3738.71Tetratricopeptide repeat protein 36 OS=Homo sapien... [more]
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