TCONS_00017320 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017320
Unique NameTCONS_00017320
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1408

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017320 ID=TCONS_00017320|Name=TCONS_00017320|organism=Clytia hemisphaerica|type=transcript|length=1408bp
TAAAAGTGATCAATTTTCTCCGAAGGGGAAAGGAAGCACTTCAGAAAAAA
ACCCATTGACAAAAAGattgttttaattaaatttgCTAAAATGAAATCTT
TGTCTTCCTTTTTAGATGATCTTTATGGTACTGTTTTGTATGGTCACTTG
GACTGCAGTTGGCTTGGATTGGGTTGGGTCTGGTTATTTGTTGTCAAACT
ATTTTGTTGTACTGATTGGTATTTGGGCTGAATACGACAAAATCTCTCCT
GTTCCTGTACAAATTTTTTTCTTTGGAATGCTTTTCACATTGCTAAACGA
TATTATCAATATTGGAGTACGATTTGAAGGAAGTAAAAATGGTGCCAAGG
CTgGTGGTGTTTACAATACATTTAATTTCAACGCAACATGTTATATCCTT
TTAATTTTGGTGAAACCAGTTGcttctttatttatttacaaagaATGGTC
TTTCAGagTCAACAGTGACGAAGGAGAAGGACAGGCTCCAAATGCATCTG
CTTACGAACGTTTAGATCAAAACAATGGAGGCGGAGCATATGGCGGTTAT
GGTGGAGCCAAGGATCAACCACCTCAATACCAGCCACCTCAGCAGCCCTT
TCCGTAAACCTCACGGTGTTTATGAACTGTCATGGATGCCTTTAGAATAC
TCACTATACCAAAACACTTCATTttcttaaaactttttgatatttGACAA
CGCTTTTGTAACCTCTGTTAATTGCACTATGTTAGTATTTTGTTCTTGTA
GCTAGATAGTTTTGGTACTAAGGACTATTTCCTAAGTTCCAGAGGTTTAA
CAAATAGTTGGTCCTCCATCATGTTGTTGCGGGATATTCAAGAAGTTAAT
TCAACAACACTTTAACCTAAAACCTTTCCAAGGCCAtttgtaaaattctt
taaaaagacTGGAATTGCCCTGAATCTTTCTTTGAATTTAGTTCCTTTGT
CTTTAACAGttcaaaggtttttttaagtTGTTAATGTGTAATCATTCATC
TATGTTCTGTAATCATATATAAttgttttactttaaatttgcactattta
tgttttttttgtattacTGTATGCATATTTTTTACCATGGCATTGTTTTT
GCTTCTCAAGGAATGGGAAGGACTTTACATTCTagttaaattttcaaata
ttcagCCACTAATTTCAGCcaaattctttttgattttgaggTTCTTTTTC
TTCTGGAATTGACATTATTACAGCCCTGTGAAtccaggtcggcattcggc
aatGCCGACTTGAAAGCCCACGTAAGTTGAGCTGAAGTCGGCTTTTATTT
GCCAACGTAATTTACACTCTAGGTCGGCGTGccgacaaaagaaatgtttt
gggtcggcaaagctgacctaaagaggaaaaatattatttgttaggttaat
cTAATTNN
Run BLAST on NCBI

transcript from alignment at sc0000264:360182..363992-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017320 ID=TCONS_00017320|Name=TCONS_00017320|organism=Clytia hemisphaerica|type=transcript|length=3811bp|location=Sequence derived from alignment at sc0000264:360182..363992- (Clytia hemisphaerica)
TAAAAGTGATCAATTTTCTCCGAAGGGGAAAGGAAGCACTTCAGAAAAAA
ACCCATTGACAAAAAGATTGTTTTAATTAAATTTGCTAAAATGAAATCTT
TGTCTTCCTTTTTAGATGATCTTTATGGTACTGTTTTGTATGGTCACTTG
GTAAGTTTTTTCTTGTATTGAATTTTTGAATTTTTTATACTACAGAAAAT
TTCAATGTAAGTTTTGGTGTCTTTGCTGTTTTTTTCAAGTTAGCAAAGCA
ATTTGTTGAATGAGTTGAAAAAAAGCCCCCCCCCCTCACAACCTATTGGC
ACCGTCGCAAATGTCGACATAAATCTAGCTTTTGTCAACGTTGTTTCTGT
ATCAGTATTAATATTTTTAAAGTAAAACTTATCTCTTCAAATTTTAGGAC
TGCAGTTGGCTTGGATTGGGTTGGGTCTGGTTATTTGTTGTCAAACTATT
TTGTTGTACTGATTGGTATTTGGGCTGAATACGACAAAATCTCTCCTGTT
CCTGTACAAATTGTATGATTCCTTTAAAATTCAATCACACTAAAATATTG
GTAATAACAGCCTTTTTAGTGGAAAAACACTGGAAAAAGTGCCCTTTTTG
GCCACCAACGGAGGACACTGCCTTGCCTTTATAAAATATGGCCTGTTTTA
TTGACAAGTCTTTCAAAAGATAAAACATTCACTTAGGTCACATTTTTAAA
ACAAGTTCGTCGATGACAACTACTAGTACTAATGATATCATTTGCATCTG
TTTAGTTTTTCTTTGGAATGCTTTTCACATTGCTAAACGATATTATCAAT
ATTGGAGTACGATTTGAAGGAAGTAAAAATGGTGCCAAGGCTGGTAAATA
TATTTTGAATTAAAGTCATATGTCAAAGTTTGTTTATTTTGCTATTAGGC
AAATTTGAGTAGCTGTCTACCTGAAGGTAGGGACGTCTCATTATCCTGGA
TCTCTCCATTTACCCTTGAACCTATTTAATTTACCATACCTTTTGATAAA
TTTTCAGGTATAGGGGCACTATTGCTGAATGCTCTATCTGTGTGCTACGG
CAGCTTCAGTTTGATTTATATTATAATATTTGTTTTCTTACAGGTGGTGT
TTACAATACATTTAATTTCAACGCAACGTATCTTTTCACACATTATTTTG
TTCTCTATAATCTCATAGAAAACAGGCACTTTGTCCTATTTCTCAGGACA
AGGCAATGATGGAGTCAAATTACATATTCGTTTTATAAGTGGCTCCAATT
TTCGGGTCAGGTCTGAGGCAAATTAGATTACTTTGATCATCCCTGATATT
ATACCATACTTACGCTTATTGGTTCAAGGGCCGTTTGGATCGTTTGCCAT
GGTTAGAATATCTTATAAGCTTTCATTTTACGAGATAATGAAAAAAATTG
CTAATTTAAGGCCTCAAATCTTAGCATCCTAGCATCTTAGCATCCTTATA
ATGATATGAAAATAGATATGAATGTAGATATGAAAAATTATTGAAAAATG
CTATCATGATAACCTGACAATTAAAAAATTTTCTTAATTAATTTACAAAT
ATCTAGATGTTATATCCTTTTAATTTTGGTGAAACCAGTTGCTTCTTTAT
TTATTTACAAAGAATGGTCTTTCAGAGGTAAAATTATTTTTTTCTATGAA
ATTTCAAAAAAGAGTTAGATTTTTGTAAGCTAATGGCAATGTTAGTTTTT
TTTCTTAGATCTCTAAAGAATGATCTTTTTTGGGAAACCTTTCTCCCATA
TCACAACATGGATTACCACATTATGAAATAGTATAAATTATGTAATTTAT
AATTTTCTATTATCAATCTGCTCATTATTTTATTCATGAAAATACTTTTA
ATCTATCTTGCAGTCAACAGTGACGAAGGAGNTTATTTTGCTATTAGGCA
AATTTGAGTAGCTGTCTACCTGAAGGTAGGGACGTCTCATTATCCTGGAT
CTCTCCATTTACCCTTGAACCTATTTAATTTACCATACCTTTTGATAAAT
TTTCAGGTATAGGGGCACTATTGCTGAATGCTCTATCTGTGTGCTACGGC
AGCTTCAGTTTGATTTATATTATAATATTTGTTTTCTTACAGGTGGTGTT
TACAATACATTTAATTTCAACGCAACGTATCTTTTCACACATTATTTTGT
TCTCTATAATCTCATAGAAAACAGGCACTTTGTCCTATTTCTCAGGACAA
GGCAATGATGGAGTCAAATAACACATTCGTTTTATAAGTGGCTCCAATTT
TCGGGTCAGGTCTGAGGCAAATTAGATTACTTTGATCATCCCTGATATTA
TACCATACTTACGCTTATTGGGTCAAGGGCCGTTTGGATCGTTTGCCATG
GTTAGAATATCTTATAAGCTTTCATTTTACGAGATAATGAAAAAAATTGC
TAATTTAAGGCCTCAAATCTTAGCATCCTAGCATCTTAGCATCCTTATAA
TGATATGAAAATAGATATGAATGTAGATATGAAAAATTATTGAAAAATGC
TATCATGATAACCTGACAATTAAAAAATTTTCTTAATTAATTTACAAATA
TCTAGATGTTATATCCTTTTAATTTTGGTGAAACCAGTTGCTTCTTTATT
TATTTACAAAGAATGGTCTTTCAGAGGTAAAATCATTTTTTTCTATGAAA
TTTCAAAAAAGAGTTAGATTTTTGTAAGCTATGGCAATGTTAGTTTTTTT
TCTTAGATCTCTAAAGAATGATCTTTTTTGGGAAACCTTTCTCCCATATC
ACAACATGGATTACCACATTATGAAATAGTATAAATTATGTAATTTATAA
TTTTCTATTATCAATCTGCTCATTATTTTATTCATGAAAATACTTTTAAT
CTATCTTGCAGTCAACAGTGACGAAGGAGAAGGACAGGCTCCAAATGCAT
CTGCTTACGAACGTTTAGATCAAAACAATGGAGGCGGAGCATATGGCGGT
TATGGTGGAGCCAAGGATCAACCACCTCAATACCAGCCACCTCAGCAGCC
CTTTCCGTAAACCTCACGGTGTTTATGAACTGTCATGGATGCCTTTAGAA
TACTCACTATACCAAAACACTTCATTTTCTTAAAACTTTTTGATATTTGA
CAACGCTTTTGTAACCTCTGTTAATTGCACTATGTTAGTATTTTGTTCTT
GTAGCTAGATAGTTTTGGTACTAAGGACTATTTCCTAAGTTCCAGAGGTT
TAACAAATAGTTGGTCCTCCATCATGTTGTTGCGGGATATTCAAGAAGTT
AATTCAACAACACTTTAACCTAAAACCTTTCCAAGGCCATTTGTAAAATT
CTTTAAAAAGACTGGAATTGCCCTGAATCTTTCTTTGAATTTAGTTCCTT
TGTCTTTAACAGTTCAAAGGTTTTTTTAAGTTGTTAATGTGTAATCATTC
ATCTATGTTCTGTAATCATATATAATTGTTTTACTTTAAATTTGCACTAT
TTATGTTTTTTTTGTATTACTGTATGCATATTTTTTACCATGGCATTGTT
TTTGCTTCTCAAGGAATGGGAAGGACTTTACATTCTAGTTAAATTTTCAA
ATATTCAGCCACTAATTTCAGCCAAATTCTTTTTGATTTTGAGGTTCTTT
TTCTTCTGGAATTGACATTATTACAGCCCTGTGAATCCAGGTCGGCATTC
GGCAATGCCGACTTGAAAGCCCACGTAAGTTGAGCTGAAGTCGGCTTTTA
TTTGCCAACGTAATTTACACTCTAGGTCGGCGTGCCGACAAAAGAAATGT
TTTGGGTCGGCAAAGCTGACCTAAAGAGGAAAAATATTATTTGTTAGGTT
AATCTAATTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009693XLOC_009693Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017320-exon-sc0000264-1575043694:363843..363992TCONS_00017320-exon-sc0000264-1575043694:363843..363992Clytia hemisphaericaexon
TCONS_00017320-exon-sc0000264-1575043694:363481..363595TCONS_00017320-exon-sc0000264-1575043694:363481..363595Clytia hemisphaericaexon
TCONS_00017320-exon-sc0000264-1575043694:363150..363237TCONS_00017320-exon-sc0000264-1575043694:363150..363237Clytia hemisphaericaexon
TCONS_00017320-exon-sc0000264-1575043694:361867..361900TCONS_00017320-exon-sc0000264-1575043694:361867..361900Clytia hemisphaericaexon
TCONS_00017320-exon-sc0000264-1575043694:361367..361437TCONS_00017320-exon-sc0000264-1575043694:361367..361437Clytia hemisphaericaexon
TCONS_00017320-exon-sc0000264-1575043694:360182..361131TCONS_00017320-exon-sc0000264-1575043694:360182..361131Clytia hemisphaericaexon
TCONS_00017320-exon-sc0000264-1510915933:363843..363992TCONS_00017320-exon-sc0000264-1510915933:363843..363992Clytia hemisphaericaexon
TCONS_00017320-exon-sc0000264-1510915933:363481..363595TCONS_00017320-exon-sc0000264-1510915933:363481..363595Clytia hemisphaericaexon
TCONS_00017320-exon-sc0000264-1510915933:363150..363237TCONS_00017320-exon-sc0000264-1510915933:363150..363237Clytia hemisphaericaexon
TCONS_00017320-exon-sc0000264-1510915933:361867..361900TCONS_00017320-exon-sc0000264-1510915933:361867..361900Clytia hemisphaericaexon
TCONS_00017320-exon-sc0000264-1510915933:361367..361437TCONS_00017320-exon-sc0000264-1510915933:361367..361437Clytia hemisphaericaexon
TCONS_00017320-exon-sc0000264-1510915933:360182..361131TCONS_00017320-exon-sc0000264-1510915933:360182..361131Clytia hemisphaericaexon
TCONS_00017320-exon-sc0000264-1491911889:363843..363992TCONS_00017320-exon-sc0000264-1491911889:363843..363992Clytia hemisphaericaexon
TCONS_00017320-exon-sc0000264-1491911889:363481..363595TCONS_00017320-exon-sc0000264-1491911889:363481..363595Clytia hemisphaericaexon
TCONS_00017320-exon-sc0000264-1491911889:363150..363237TCONS_00017320-exon-sc0000264-1491911889:363150..363237Clytia hemisphaericaexon
TCONS_00017320-exon-sc0000264-1491911889:361867..361900TCONS_00017320-exon-sc0000264-1491911889:361867..361900Clytia hemisphaericaexon
TCONS_00017320-exon-sc0000264-1491911889:361367..361437TCONS_00017320-exon-sc0000264-1491911889:361367..361437Clytia hemisphaericaexon
TCONS_00017320-exon-sc0000264-1491911889:360182..361131TCONS_00017320-exon-sc0000264-1491911889:360182..361131Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000264supercontigsc0000264:360182..363992 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
46.5026	47.3384	65.8862	67.3221	17.3921	11.5375	20.3332	20.9158	16.6508	19.2502	21.139	12.2834	11.9148	10.8974	14.91	16.1269	14.8496	13.43	10.5942	13.4928	9.52974	8.9932	17.6618	16.563	11.3954	13.1625	12.0493	10.8244	15.8846	14.4655
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017320 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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