TCONS_00017327 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017327
Unique NameTCONS_00017327
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017327 ID=TCONS_00017327|Name=TCONS_00017327|organism=Clytia hemisphaerica|type=transcript|length=501bp
TTCCGATCCTCTTTTCTAGAGGCTATCTTATTCTTTTCGGAGCTCTGCAC
GGTCAAATTCTCCTTGTTTGTTGTAATTTCAACAGACCGTCGCGCGTCAC
GTTCAAAAATTTCTGAATTAACAGGTAAGagggattttaaaatttaaagt
gaCATGGTCAACTTTAAAAACAAGCAACAAATGCAGACCAAAGCAAAGAA
GAAGTTATTAAACTTAAATCAAAGCAGTATATATTAACTATGGATGAAAG
ACGAAGAATGCTCAATCAAAAGTACATTTTATCAATACTCAAAAGCTAGG
ATTGAATCTTTAAAATGTCAGAATGTCtgctttttattttaaagagTTTT
GCTCTTacttttttgtgtgttttgtcATTTGTTTTTCTCATCAACCCGGA
TTAGCTATTGATATTGTTGTAGAATGGCTAAACTTTCTCATGCTGTTATG
CTGTTTTTTTCTTGGACATACATGCAATAACCATTTTTCTGCTGCATACT
G
Run BLAST on NCBI

transcript from alignment at sc0000264:49863..50363

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017327 ID=TCONS_00017327|Name=TCONS_00017327|organism=Clytia hemisphaerica|type=transcript|length=501bp|location=Sequence derived from alignment at sc0000264:49863..50363 (Clytia hemisphaerica)
CAGTATGCAGCAGAAAAATGGTTATTGCATGTATGTCCAAGAAAAAAACA
GCATAACAGCATGAGAAAGTTTAGCCATTCTACAACAATATCAATAGCTA
ATCCGGGTTGATGAGAAAAACAAATgacaaaacacacaaaaaagtAAGAG
CAAAActctttaaaataaaaagcaGACATTCTGACATTTTAAAGATTCAA
TCCTAGCTTTTGAGTATTGATAAAATGTACTTTTGATTGAGCATTCTTCG
TCTTTCATCCATAGTTAATATATACTGCTTTGATTTAAGTTTAATAACTT
CTTCTTTGCTTTGGTCTGCATTTGTTGCTTGTTTTTAAAGTTGACCATGt
cactttaaattttaaaatccctCTTACCTGTTAATTCAGAAATTTTTGAA
CGTGACGCGCGACGGTCTGTTGAAATTACAACAAACAAGGAGAATTTGAC
CGTGCAGAGCTCCGAAAAGAATAAGATAGCCTCTAGAAAAGAGGATCGGA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009699XLOC_009699Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017327-exon-sc0000264-1491911889:49863..50363TCONS_00017327-exon-sc0000264-1491911889:49863..50363Clytia hemisphaericaexon
TCONS_00017327-exon-sc0000264-1510915933:49863..50363TCONS_00017327-exon-sc0000264-1510915933:49863..50363Clytia hemisphaericaexon
TCONS_00017327-exon-sc0000264-1575043694:49863..50363TCONS_00017327-exon-sc0000264-1575043694:49863..50363Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000264supercontigsc0000264:49863..50363 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.242998	0.473923	0.412703	0.269177	0	0.129475	0	0	0.102385	0	0	0.242753	0.0808052	0	0	0	0	0	0	0	0.117472	0	0	0	0.130448	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017327 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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