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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017334 ID=TCONS_00017334|Name=TCONS_00017334|organism=Clytia hemisphaerica|type=transcript|length=3099bp
catAATACTAACATTCACTTgaagtttcaagatggcggatgatATCGGCG
GGAAGTTGAATTTAACTCAAATTAGAAATTTAGTTCGTCAATATATCGAC
ATTCACCTCTACGATTCTGCACTATTTTGGGCTGATAAAGTCTGTACATT
GTCTAAGAACGATCAAAAAGATGTTATTTGGTTAGCgcattgtttattct
tgtcgaAACAACCGTTAAGAGCAGCCCAGTTACTGAAATCAAAAGGACTA
ACCTCAACCAATCTTCTTGGGCGCTACTTGGCAGCAAAGTGTTTTGTGGA
ATGTAAAGAATGGAGAAGTGCCCTCGATGTTCTAGATGGGGAAGAGCAAG
AACTGAAAACCACTTTTAAAGAATCAATCAACACAAATCCTTTGATTTCA
ACATCCACCTCAACTGCTGCGGATGATGATGGTGAATTCAGTGCCATCAT
TTCAAGCTCTCTTTCTCTTCCATATGCAGGAAGCTCCAAAAGTAGAAAGT
TAGAGGCAGCAGTCTCTCTTTTAAAAGGAACTGTTTATGAAGCTTTGGAA
AACAGACAAATTGCCACACAATGTTTCAAGGATGCGTTACAGCATGATAT
TTATTGTTTTGAAGCTTTTAACCTGCTTGTTTCACACCATAGTTTGACGT
CAGCTGAGGAAAATCAACTTTTAGAGAGTTTACCGTACAACACCCAATGC
AATGAGGAGGAAGCAAAGCTGCTAAGATTTGTGTATAAGAATCTTATTAA
CAAATATTCAAAGCCTGTTGAAGAACTTCTTCCACCAGTTTTGCAACCAA
TGACAGGAAATCTTGATTACATTGTGTCATTAGCTGAGAAGTATTTTAAT
AATTCCAATTTCAGAGAAGCATTGAGATATACCAAGTATGTTTTGAAAGT
AGACAACTTACATGAAGGGTGTTTACCACTTTATATTTCATgtctttcaa
ttttgaaaatgacaaaTGAATTGTATAATCTTGCTCATCGCCTTGTCAAC
ACTTATCCAACACGCTCAGTTTCTTGGTACGCCATTGGTTCATATTATCT
CAtgataaaaaagaatgaatcagCCAGGAAATACTTTGGTAAAGCAACCT
CAATCAACAACACATATGGCCCTGCCTGGTTAGGATTTGCCCATAGTTTC
TCATCTGATGGAGAGAAAGACCAAGCAATATCAGCTTATTTTAGCGCATC
TCAATACATGCCAGGATCTCATCTTCCTTTCCTTAATCTTGGTAGAGAAT
ATGCCCAATCTCATGATCTAAAACTAGCCATGAAGTTCTATAAAGAAGCA
ATGTCAATTGCTCCACATGATCCTCACATCAAGTTAGAGCTTGGAACTTT
GGCGTATGAAAATGGTGAATACCAAAAAGCAGAAAGCCTTCTGCTCGACT
GTTTGAAGAAAGTTAGCCATGTTGAAAATGATCCCAATACTTTTGTTGAT
ATTTGGGAGCCATTGTTTAATAACCTTGGCCATGTTATGCGTAAATTAGG
AAAATATGAAGATGCATTAGATTACCATAAACAGGCTTATCAAATGGCAC
CTAAAAATTCAGGGACTTGTGCTGCTATGGGACTTTGTTATTTGCTCGCC
TCAAAGTACACTGAAGCTGTTTCAATTCTTCATAAAGCCTTAAGTTTAAA
AAGAGATGATACGCTTTCTATGCAGCTACTGAATGAAGCATTGAAATCAT
TGTCAGCAATTGAATCAAGTAATATAGAAAATATCGACCCACTTGAGGAA
TCTCTAGAACAATCTAATGCAACTAAACAGAGCATCTCGATATTGAGCAT
GAAAGACAGTAGTGTTATTGATGCAGACgaaacatcagattttgatggAT
GTAAAACAACTAATATGAGTGATGTCATGGAAATGGAGTCCACAATGGAA
GATTGTTCGAATATGTCATTGGAAATGTCTGATCTATAgatataatattt
ttaaagcattatttTATTCAGCAAACTTTATGATTTGATCTATATACTGC
TCATGCACACAAGGGCGAAAATTTTATGTAAAGTATCTGCGTTTAAAACT
TCTGAGAAAAATTTGCTGAATTCATAAACCAGTACAGTATccaggggggg
tactaggtttgtggTGAAGGGTGTGTCCGAgctaaagtttgaaaatcgac
caTTTAAGAGACTAAaaaatttcaacgtttttgCGACCCTTTGAAGGGCT
ATATTTCCAACTTTTAGCTCAAAATTATCAGATTGTACGACCCTTTCAGC
TAGtcgatttttggacctaccgggaggtcctttaatttgaccgttgtccg
ttcgtctgttacaagctagctataagcaaaaagctcgtacccaaaaattt
taaaaatgtcaaaaaatgaaggtcttcaaatctctctaaaacctattttt
atgggAAGCTATGGTATTTTNAACTCAActcaaattattatgctttaaca
gctaaaaatagacatgggtacgagctttttgcttatggctagcttttctc
gggattggctcattagtttttttttaattttttgcacaatgatacaaaat
ggcaatgcctgaaaagtgacggagcccgatttttgagaaaaaattttggg
gggcaaatttgggccaaaaactacctaaaaataaggttttttggactttg
tgcaaaattgcttcattagtttttcctgatttttggcagaaagatagagt
gcaaggtaccctaaaatgtggctgaagtattttttttcggaaaaattttt
ttcgtcgtcaaatacggattttcgcaaatttgggccaaaaactacctaaa
aataaggttttttggacttggtgcaaaattgcttcattagtttttcctga
tttttggcagaaagatagagtgcaaggtaccctaaaatgtggcttttttt
cgtcataaaattttcaaaaaaagacgaccaagttacacaatgataaacga
aaataaatcagacgtttttgcattgttctaaaacttatcgtgtttgctca
ataccaatagtaaaatgtagaatacctacttttatctgattttgatcaac
aggtaggtccattcagcatgttgcttgtttatatTATATTCCCTTTCAG Run BLAST on NCBI protein sequence of TCONS_00017334-protein >TCONS_00017334-protein ID=TCONS_00017334-protein|Name=TCONS_00017334-protein|organism=Clytia hemisphaerica|type=polypeptide|length=635bp
MADDIGGKLNLTQIRNLVRQYIDIHLYDSALFWADKVCTLSKNDQKDVIW
LAHCLFLSKQPLRAAQLLKSKGLTSTNLLGRYLAAKCFVECKEWRSALDV
LDGEEQELKTTFKESINTNPLISTSTSTAADDDGEFSAIISSSLSLPYAG
SSKSRKLEAAVSLLKGTVYEALENRQIATQCFKDALQHDIYCFEAFNLLV
SHHSLTSAEENQLLESLPYNTQCNEEEAKLLRFVYKNLINKYSKPVEELL
PPVLQPMTGNLDYIVSLAEKYFNNSNFREALRYTKYVLKVDNLHEGCLPL
YISCLSILKMTNELYNLAHRLVNTYPTRSVSWYAIGSYYLMIKKNESARK
YFGKATSINNTYGPAWLGFAHSFSSDGEKDQAISAYFSASQYMPGSHLPF
LNLGREYAQSHDLKLAMKFYKEAMSIAPHDPHIKLELGTLAYENGEYQKA
ESLLLDCLKKVSHVENDPNTFVDIWEPLFNNLGHVMRKLGKYEDALDYHK
QAYQMAPKNSGTCAAMGLCYLLASKYTEAVSILHKALSLKRDDTLSMQLL
NEALKSLSAIESSNIENIDPLEESLEQSNATKQSISILSMKDSSVIDADE
TSDFDGCKTTNMSDVMEMESTMEDCSNMSLEMSDL Run BLAST on NCBI transcript from alignment at sc0000264:241508..244606 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017334 ID=TCONS_00017334|Name=TCONS_00017334|organism=Clytia hemisphaerica|type=transcript|length=3099bp|location=Sequence derived from alignment at sc0000264:241508..244606 (Clytia hemisphaerica)
CTGAAAGGGAATATAatataaacaagcaacatgctgaatggacctacctg
ttgatcaaaatcagataaaagtaggtattctacattttactattggtatt
gagcaaacacgataagttttagaacaatgcaaaaacgtctgatttatttt
cgtttatcattgtgtaacttggtcgtctttttttgaaaattttatgacga
aaaaaagccacattttagggtaccttgcactctatctttctgccaaaaat
caggaaaaactaatgaagcaattttgcaccaagtccaaaaaaccttattt
ttaggtagtttttggcccaaatttgcgaaaatccgtatttgacgacgaaa
aaaatttttccgaaaaaaaatacttcagccacattttagggtaccttgca
ctctatctttctgccaaaaatcaggaaaaactaatgaagcaattttgcac
aaagtccaaaaaaccttatttttaggtagtttttggcccaaatttgcccc
ccaaaattttttctcaaaaatcgggctccgtcacttttcaggcattgcca
ttttgtatcattgtgcaaaaaattaaaaaaaaactaatgagccaatcccg
agaaaagctagccataagcaaaaagctcgtacccatgtctatttttagct
gttaaagcataataatttgagTTGAGTTNAAAATACCATAGCTTcccata
aaaataggttttagagagatttgaagaccttcattttttgacatttttaa
aatttttgggtacgagctttttgcttatagctagcttgtaacagacgaac
ggacaacggtcaaattaaaggacctcccggtaggtccaaaaatcgaCTAG
CTGAAAGGGTCGTACAATCTGATAATTTTGAGCTAAAAGTTGGAAATATA
GCCCTTCAAAGGGTCGcaaaaacgttgaaattttTTAGTCTCTTAAAtgg
tcgattttcaaactttagcTCGGACACACCCTTCAccacaaacctagtac
cccccctggATACTGTACTGGTTTATGAATTCAGCAAATTTTTCTCAGAA
GTTTTAAACGCAGATACTTTACATAAAATTTTCGCCCTTGTGTGCATGAG
CAGTATATAGATCAAATCATAAAGTTTGCTGAATAaaataatgctttaaa
aatattatatcTATAGATCAGACATTTCCAATGACATATTCGAACAATCT
TCCATTGTGGACTCCATTTCCATGACATCACTCATATTAGTTGTTTTACA
TccatcaaaatctgatgtttcGTCTGCATCAATAACACTACTGTCTTTCA
TGCTCAATATCGAGATGCTCTGTTTAGTTGCATTAGATTGTTCTAGAGAT
TCCTCAAGTGGGTCGATATTTTCTATATTACTTGATTCAATTGCTGACAA
TGATTTCAATGCTTCATTCAGTAGCTGCATAGAAAGCGTATCATCTCTTT
TTAAACTTAAGGCTTTATGAAGAATTGAAACAGCTTCAGTGTACTTTGAG
GCGAGCAAATAACAAAGTCCCATAGCAGCACAAGTCCCTGAATTTTTAGG
TGCCATTTGATAAGCCTGTTTATGGTAATCTAATGCATCTTCATATTTTC
CTAATTTACGCATAACATGGCCAAGGTTATTAAACAATGGCTCCCAAATA
TCAACAAAAGTATTGGGATCATTTTCAACATGGCTAACTTTCTTCAAACA
GTCGAGCAGAAGGCTTTCTGCTTTTTGGTATTCACCATTTTCATACGCCA
AAGTTCCAAGCTCTAACTTGATGTGAGGATCATGTGGAGCAATTGACATT
GCTTCTTTATAGAACTTCATGGCTAGTTTTAGATCATGAGATTGGGCATA
TTCTCTACCAAGATTAAGGAAAGGAAGATGAGATCCTGGCATGTATTGAG
ATGCGCTAAAATAAGCTGATATTGCTTGGTCTTTCTCTCCATCAGATGAG
AAACTATGGGCAAATCCTAACCAGGCAGGGCCATATGTGTTGTTGATTGA
GGTTGCTTTACCAAAGTATTTCCTGGctgattcattcttttttatcaTGA
GATAATATGAACCAATGGCGTACCAAGAAACTGAGCGTGTTGGATAAGTG
TTGACAAGGCGATGAGCAAGATTATACAATTCAtttgtcattttcaaaat
tgaaagacATGAAATATAAAGTGGTAAACACCCTTCATGTAAGTTGTCTA
CTTTCAAAACATACTTGGTATATCTCAATGCTTCTCTGAAATTGGAATTA
TTAAAATACTTCTCAGCTAATGACACAATGTAATCAAGATTTCCTGTCAT
TGGTTGCAAAACTGGTGGAAGAAGTTCTTCAACAGGCTTTGAATATTTGT
TAATAAGATTCTTATACACAAATCTTAGCAGCTTTGCTTCCTCCTCATTG
CATTGGGTGTTGTACGGTAAACTCTCTAAAAGTTGATTTTCCTCAGCTGA
CGTCAAACTATGGTGTGAAACAAGCAGGTTAAAAGCTTCAAAACAATAAA
TATCATGCTGTAACGCATCCTTGAAACATTGTGTGGCAATTTGTCTGTTT
TCCAAAGCTTCATAAACAGTTCCTTTTAAAAGAGAGACTGCTGCCTCTAA
CTTTCTACTTTTGGAGCTTCCTGCATATGGAAGAGAAAGAGAGCTTGAAA
TGATGGCACTGAATTCACCATCATCATCCGCAGCAGTTGAGGTGGATGTT
GAAATCAAAGGATTTGTGTTGATTGATTCTTTAAAAGTGGTTTTCAGTTC
TTGCTCTTCCCCATCTAGAACATCGAGGGCACTTCTCCATTCTTTACATT
CCACAAAACACTTTGCTGCCAAGTAGCGCCCAAGAAGATTGGTTGAGGTT
AGTCCTTTTGATTTCAGTAACTGGGCTGCTCTTAACGGTTGTTtcgacaa
gaataaacaatgcGCTAACCAAATAACATCTTTTTGATCGTTCTTAGACA
ATGTACAGACTTTATCAGCCCAAAATAGTGCAGAATCGTAGAGGTGAATG
TCGATATATTGACGAACTAAATTTCTAATTTGAGTTAAATTCAACTTCCC
GCCGATatcatccgccatcttgaaacttcAAGTGAATGTTAGTATTatg Coding sequence (CDS) from alignment at sc0000264:241508..244606 >TCONS_00017334 ID=TCONS_00017334|Name=TCONS_00017334|organism=Clytia hemisphaerica|type=CDS|length=1908bp|location=Sequence derived from alignment at sc0000264:241508..244606 (Clytia hemisphaerica)
cTATAGATCAGACATTTCCAATGACATATTCGAACAATCTTCCATTGTGG
ACTCCATTTCCATGACATCACTCATATTAGTTGTTTTACATccatcaaaa
tctgatgtttcGTCTGCATCAATAACACTACTGTCTTTCATGCTCAATAT
CGAGATGCTCTGTTTAGTTGCATTAGATTGTTCTAGAGATTCCTCAAGTG
GGTCGATATTTTCTATATTACTTGATTCAATTGCTGACAATGATTTCAAT
GCTTCATTCAGTAGCTGCATAGAAAGCGTATCATCTCTTTTTAAACTTAA
GGCTTTATGAAGAATTGAAACAGCTTCAGTGTACTTTGAGGCGAGCAAAT
AACAAAGTCCCATAGCAGCACAAGTCCCTGAATTTTTAGGTGCCATTTGA
TAAGCCTGTTTATGGTAATCTAATGCATCTTCATATTTTCCTAATTTACG
CATAACATGGCCAAGGTTATTAAACAATGGCTCCCAAATATCAACAAAAG
TATTGGGATCATTTTCAACATGGCTAACTTTCTTCAAACAGTCGAGCAGA
AGGCTTTCTGCTTTTTGGTATTCACCATTTTCATACGCCAAAGTTCCAAG
CTCTAACTTGATGTGAGGATCATGTGGAGCAATTGACATTGCTTCTTTAT
AGAACTTCATGGCTAGTTTTAGATCATGAGATTGGGCATATTCTCTACCA
AGATTAAGGAAAGGAAGATGAGATCCTGGCATGTATTGAGATGCGCTAAA
ATAAGCTGATATTGCTTGGTCTTTCTCTCCATCAGATGAGAAACTATGGG
CAAATCCTAACCAGGCAGGGCCATATGTGTTGTTGATTGAGGTTGCTTTA
CCAAAGTATTTCCTGGctgattcattcttttttatcaTGAGATAATATGA
ACCAATGGCGTACCAAGAAACTGAGCGTGTTGGATAAGTGTTGACAAGGC
GATGAGCAAGATTATACAATTCAtttgtcattttcaaaattgaaagacAT
GAAATATAAAGTGGTAAACACCCTTCATGTAAGTTGTCTACTTTCAAAAC
ATACTTGGTATATCTCAATGCTTCTCTGAAATTGGAATTATTAAAATACT
TCTCAGCTAATGACACAATGTAATCAAGATTTCCTGTCATTGGTTGCAAA
ACTGGTGGAAGAAGTTCTTCAACAGGCTTTGAATATTTGTTAATAAGATT
CTTATACACAAATCTTAGCAGCTTTGCTTCCTCCTCATTGCATTGGGTGT
TGTACGGTAAACTCTCTAAAAGTTGATTTTCCTCAGCTGACGTCAAACTA
TGGTGTGAAACAAGCAGGTTAAAAGCTTCAAAACAATAAATATCATGCTG
TAACGCATCCTTGAAACATTGTGTGGCAATTTGTCTGTTTTCCAAAGCTT
CATAAACAGTTCCTTTTAAAAGAGAGACTGCTGCCTCTAACTTTCTACTT
TTGGAGCTTCCTGCATATGGAAGAGAAAGAGAGCTTGAAATGATGGCACT
GAATTCACCATCATCATCCGCAGCAGTTGAGGTGGATGTTGAAATCAAAG
GATTTGTGTTGATTGATTCTTTAAAAGTGGTTTTCAGTTCTTGCTCTTCC
CCATCTAGAACATCGAGGGCACTTCTCCATTCTTTACATTCCACAAAACA
CTTTGCTGCCAAGTAGCGCCCAAGAAGATTGGTTGAGGTTAGTCCTTTTG
ATTTCAGTAACTGGGCTGCTCTTAACGGTTGTTtcgacaagaataaacaa
tgcGCTAACCAAATAACATCTTTTTGATCGTTCTTAGACAATGTACAGAC
TTTATCAGCCCAAAATAGTGCAGAATCGTAGAGGTGAATGTCGATATATT
GACGAACTAAATTTCTAATTTGAGTTAAATTCAACTTCCCGCCGATatca
tccgccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017334-exon-sc0000264-1491911889:241508..244606 | TCONS_00017334-exon-sc0000264-1491911889:241508..244606 | Clytia hemisphaerica | exon |
| TCONS_00017334-exon-sc0000264-1510915933:241508..244606 | TCONS_00017334-exon-sc0000264-1510915933:241508..244606 | Clytia hemisphaerica | exon |
| TCONS_00017334-exon-sc0000264-1575043694:241508..244606 | TCONS_00017334-exon-sc0000264-1575043694:241508..244606 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000264 | supercontig | sc0000264:241508..244606 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00017334 vs. Swiss-Prot (Human)
Match: CDC16 (Cell division cycle protein 16 homolog OS=Homo sapiens GN=CDC16 PE=1 SV=2) HSP 1 Score: 483.026 bits (1242), Expect = 3.683e-157 Identity = 246/548 (44.89%), Postives = 357/548 (65.15%), Query Frame = 2
Query: 56 LNLTQIRNLVRQYIDIHLYDSALFWADKVCTLSKNDQKDVIWLAHCLFLSKQPLRAAQLLKSKGLTSTNLLGRYLAAKCFVECKEWRSALDVLDGEEQELKTTFKESINTNPLISTSTSTAADDDGEFSAIIXXXXXXXXXXXXXXRKLEAAVSLLKGTVYEALENRQIATQCFKDALQHDIYCFEAFNLLVSHHSLTSAEENQLLESLPYNTQCNEEEAKLLRFVYKNLINKYSKXXXXXXXXXXQPMTGNLDYIVSLAEKYFNNSNFREALRYTKYVLKVDNLHEGCLPLYISCLSILKMTNELYNLAHRLVNTYPTRSVSWYAIGSYYLMI-KKNESARKYFGKATSINNTYGPAWLGFAHSFSSDGEKDQAISAYFSASQYMPGSHLPFLNLGREYAQSHDLKLAMKFYKEAMSIAPHDPHIKLELGTLAYENGEYQKAESLLLDCLKKVSHVENDPNTFVDIWEPLFNNLGHVMRKLGKYEDALDYHKQAYQMAPKNSGTCAAMGLCYLLASKYTEAVSILHKALSLKRDDTLSMQLLNEALK 1696
+NL ++R VRQY+D Y SALFWADKV +LS+ + +D+ WLA CL+L+ Q RAA L+S+ L RYLAA+C KE + ALDVLD EE K F++ + +S D E S +++++ LL+G +Y+AL+NR +AT +K+AL+ D+YCFEAF+LL SHH LT+ EE +LLESLP + CNEE+ +LLRF+++N + KY+KP E ++P + + NLD +VSLAE+++ N +F+ + T V++ D H CLP++I L L NEL+ L+H+LV+ YP+ VSW+A+G YYLM+ KNE AR+Y KAT++ TYGPAW+ + HSF+ + E DQA++AYF+A+Q M G HLP L +G EY +++ KLA +F+ +A+SIAP DP + E+G +A++NGE++ AE LD L+K+ + N+ VD WEPL NNLGHV RKL KY +ALDYH+QA + P+N+ T +A+G + L + AV H AL L+RDDT S+ +L ++
Sbjct: 1 MNLERLRKRVRQYLDQQQYQSALFWADKVASLSREEPQDIYWLAQCLYLTAQYHRAAHALRSRKLDKLYEACRYLAARCHYAAKEHQQALDVLDMEEPINKRLFEKYLKDESGFKDPSS-----DWEMS----------------QSSIKSSICLLRGKIYDALDNRTLATYSYKEALKLDVYCFEAFDLLTSHHMLTAQEEKELLESLPLSKLCNEEQ-ELLRFLFENKLKKYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE--VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 524
The following BLAST results are available for this feature:
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