TCONS_00017335 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017335
Unique NameTCONS_00017335
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017335 ID=TCONS_00017335|Name=TCONS_00017335|organism=Clytia hemisphaerica|type=transcript|length=288bp
TCGCTGATGACACTCGCGCCACAAAGGAAGTCAAAACTCTAGAAGATGCT
GTCCTACTTCAAAACGATCTTGATAGAATATATAAATGGACGGATGACAA
CAACATGAAGctaaatgatataaaatttgaactCTTGCGCTATGGAAAGA
ACCATGAGATCAAGACTCGGAAGCTATACATCACCATCTGGTGTTGAGAT
TGAAAACAAAGATGTTGTGAAAGACCTTGGAATCCTGATGGACAGTAATT
GCACATTTCAGAAGCAAATTACTGCAGTAATCGAAAAG
Run BLAST on NCBI

transcript from alignment at sc0000264:287143..287430

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017335 ID=TCONS_00017335|Name=TCONS_00017335|organism=Clytia hemisphaerica|type=transcript|length=288bp|location=Sequence derived from alignment at sc0000264:287143..287430 (Clytia hemisphaerica)
CTTTTCGATTACTGCAGTAATTTGCTTCTGAAATGTGCAATTACTGTCCA
TCAGGATTCCAAGGTCTTTCACAACATCTTTGTTTTCAATCTCAACACCA
GATGGTGATGTATAGCTTCCGAGTCTTGATCTCATGGTTCTTTCCATAGC
GCAAGagttcaaattttatatcatttagCTTCATGTTGTTGTCATCCGTC
CATTTATATATTCTATCAAGATCGTTTTGAAGTAGGACAGCATCTTCTAG
AGTTTTGACTTCCTTTGTGGCGCGAGTGTCATCAGCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009707XLOC_009707Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017335-exon-sc0000264-1491911889:287143..287430TCONS_00017335-exon-sc0000264-1491911889:287143..287430Clytia hemisphaericaexon
TCONS_00017335-exon-sc0000264-1510915933:287143..287430TCONS_00017335-exon-sc0000264-1510915933:287143..287430Clytia hemisphaericaexon
TCONS_00017335-exon-sc0000264-1575043694:287143..287430TCONS_00017335-exon-sc0000264-1575043694:287143..287430Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000264supercontigsc0000264:287143..287430 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.30372	3.8627	9.55098	7.99199	1.33052	2.30587	0.828441	1.47681	2.11285	3.76334	1.75293	2.62487	0.835359	0	2.08862	1.40284	0	0	0	0.497087	3.45494	1.70991	1.01432	2.14727	1.58628	2.88376	0.552243	2.92359	0.945389	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017335 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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