TCONS_00017349 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017349
Unique NameTCONS_00017349
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length891

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017349 ID=TCONS_00017349|Name=TCONS_00017349|organism=Clytia hemisphaerica|type=transcript|length=891bp
TGCCATAAGCATGAGTAAACCACTTTCTGAGTCTGAGGTCAACCTTCTAG
AGCAAAGTTTGGGCTGGAAAGATGAGTGGTTGGATGATCACGAGAAGATT
gCTACTCCTTACGGAACATGTTGCTGTCAATGAATGTAAGATCTTTTAAA
CCACGTACAGTTGACATGgtgctattttcatcaattcttgttatcgTACc
aaaggtgatgcaggagatataaTGGAATATGATAAAGCGATTGTGCAATA
GCTATTTTTCTGTCATGGGACTCTGTTTAAAGGTGAgattaatatttttg
tttaaaacacgAGTACTTTGTATACAACACATGTAACATACATATAACCA
GATATAACATCAAAAGGCACAGAATGCGAAAGCACGTGGTAAGTACGTGG
ATATattttgacctttaaaaattttgatatttttgacaacaacaagtttt
tttcaaacattttctttcgtACTTTACAGTAATtatgtgaacatggtctt
agagcTGACCTGTGTCAATGACCTGTGAACCtccgtttcgaactagccgt
ttGTGTAGTGATGTAATATCTTTTATCAGATTTTCATTCTGATTCtataa
ttgaattttttttgcattgctttcacttttctttaccaaaatcttcaaat
tggAGAAAAATTAATGTTTGAAACTGTTCGACTTTGAATgaactttaaaa
gaaaaatttaatgataacAACTCTtgtttttgaacaattttcatGCTgaa
tccaaaatttcaaaccaatatAGCTAAAAGGTgtcaaaattaatattttc
aaagaagattACTGAGCTAAAAACCCTCAATGAGTCAAAGTTTCCAATTA
TTACGTtcaaaacaaatataaaattttcagcAGTTTGTTAG
Run BLAST on NCBI

transcript from alignment at sc0000266:14058..18027+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017349 ID=TCONS_00017349|Name=TCONS_00017349|organism=Clytia hemisphaerica|type=transcript|length=3970bp|location=Sequence derived from alignment at sc0000266:14058..18027+ (Clytia hemisphaerica)
TGCCATAAGCATGAGTAAACCACTTTCTGAGTCTGAGGTCAACCTTCTAG
AGCAAAGTTTGGGCTGGAAAGATGAGTGGTTGGATGATCACGAGAAGATT
GTAAGTCTGAGTGATGAACGTGTTCCCATGTTTACCATTCAGATATTATT
TCTTCTTAGGAAAATCTTACCCTCCACCACTGCTTTGTTTAAGATTCTTT
GTCTCCTGGTTCCCCAACAAGGTTTCTGTCTACCTACTGATGCGAGAGCG
TTAgcacgaaaaatgaaaaagctcAATACAGAAAGGACATCTTTGTTGAA
GAGTAAAGGTGGCAAGGAAAAGTTGGAGGTAATTCATAGTGGTTCTTTCT
TTGAATGGCTCAAAAAACATAAAGCCCCAACTGTTTCAAGTACTTGCCCA
TCAAAAACAAGCGAGCAACTCCAAAGAGAGGAGgactttcaaaatcaaaa
acaaaaattggagCTTCTTTTAGAGGAGGAAAAGTCCAAATCCAGACGTT
TAGGTGacctcataaaaaaagaaaagtcaaCCTCTGAATTGTCAGCTAAG
ACAATTGACAATTTGAAGGGTGACAAAGTTCACCTGAACAAGGTTATTGG
TGGTTTAAAATCTTCGATTGCAAAATATCAATCTGTAATCGCTGCACAAA
AGCTCAACTCAGCACAACAGTCTTTCAAGGGCTGTAATCATGACACTGGC
CTTGGATTTATCACCATCACACGCTTTTGTGAAGGGGAGCCCCGAATATT
TGAGGGAATTAAATACACTAAGGATCTTGCATCCATgactttcaaatcaa
ataatCAGCCAGCAATTTTTACTGCTATTTCAAGCAAGCACTCTAACTCC
ACATTATGTGATAAACAATTGAACAACcgtgtttcttttttgtttaagtt
GCTTTGTCTGTTGTCTGGTTGTGCGCCTAATGTTTTTTTAGGTAGAGAAT
GTGATGTGCAGGAGTTAAGTGTTCTTTTTGCTAAGTTTTTGAAGAAGTAT
ggcaatctttttttttcagattttgttcTCCCAAGTGATTTTTTCCCAAA
GTTGTCCCCTGCTCAGGCAGTTGATGTTAAGTCTCTTCTCCGGTTGTCAA
TGGATGCCTTTCGTAAGCTTAGAATTGTGTTGAAGAAGTGTCTTGGTTTT
AACATCTTTCCATCTGAGGGTAAAATGCGAGACATGCAATCCCAACTTTT
AACTTATTTAAAGAAAGCTGATGTTAATGTCTCTACCCAGACACTAGTGA
AAGTTGGTCAAGAAAAAAAGCATGGGAACGTATATGTCCTCAGGTGTAGA
GACCTTTCTGGGTATatggaaaatgttttaaagGAATATAAACTGAAAGC
TGGGTTTGGACCAGATGATGCTCAAAAGAGAGTTGATCTGCTTTTCTCTG
GTGACAAGGGAGGAGGGCTGGTTAAGTTTTATTTTGAGGTAATCTGTGGC
CAATCAAAGCTTTCTGTTTATGATGTCCATGTCTTCAGCATGTATGAAGG
GTCTGATTGTTATGAGAATTTGCATACTGTTTTTGAACCTTTTCAGGCCG
AAATTCGAAGGATTCAGGAAGATGATTTCAGGCTAGATGGGCATCCTGTG
AAGGTGTTACTAGGGGGAGACTTTCACTTTTTAGATGCAGTCCTTGGTCA
TCAAGGCTCATCTGCTACTTTCCCCAGTAGTAAGTGGGATGTTAGTCTGA
GTCATCTCAGAGAGCATGGGTCACGCCCACACACACCGGAAAACTGTGTT
GACATCCAATTTAGAAATGTTGATGATGTAAATGCCAATTATAGTGCAAA
TCTGGCTTTAAATGGTCAAAGTTGTGAGTTGAGAAAGACTGGGAAGTtcc
attgttgtttttttggtcCAATGATTTTTCCGATTAAAACTCTTGAAAAT
GTTGTTCCGCCTGTTTTGCACATTATGTTGGGAATAGTGTTGAAATTGTT
CAATCTTTTATTAGATCGTAGTCGTGACTTAGATAGCTCAAAAGTAGGTA
GCCCAGCCCACATAGAGAATATGCGACAGAAAGAAAAGGCTGAGGAAGAG
GCTCGCGTTACAATGGAAGCACTTGATAAAAAGAGACGTGAGTTGGGCAA
AGAATTAGTTGACCTGTACAGTTGGAGAGAGCGTTTTGATGCGGTTCTTG
CTGGCAACATTAAGGAACTCCATTCTATTGCAAAAGCTTTTGATAATTCT
TGCAGCACCAAGAATCCAAAGTTTGAGAAATGTACAGGAATCAAGTGCTT
CCTTTCTTGTTATGATATTGATGTTTTTTGGGTTGCGTGTGACGTGTGTA
AGTGTTGGAAACACTGTATGTGCGAGCTGATTCCATCTTCAGAACAAGCT
TACTATTCCAATGAAGTAGATTCTAAATACACTTGCTTGACCTGTAGAGG
CAAAGATGTTGATGACATCAGTGATTTATTCAAAGATGTCATCAATAAAA
TTGTCTGCAGACAGGAAAGCGCAGAGGCTTCATTTCAAAGGTCAAGTCAT
ACCTTAGCTATGCTTGAGGAAGAAACTGTCAAAACCATGGGTCCCATTGA
AATTGACCTTCATCGGCGGCTAAATGAGATAAACGTTGATCGTCAAGCTT
TCCATGGTGAGGTCTTTGTCGGGAATCACTGCAAAATTGTACTTGCCAAA
CACAAGTACCTTTGTGAGTGTCTCGATGGAGATAAAGTGGGGACACAGAT
TGAAGCAGTCCTTGAAATCTTTGCTAAACTCGTTCctcttattttcacca
aaaaaGATCTTGATGAGGAAGAGATCACTGAATTAACAAATCTTTGTAAT
GAGTATGGTCGTGTCTTTCCTAAAAGTTTTCCTGCCGAAAATCTCACAGT
CAAAATGCATTCGTTGATTTTTAGTGTGCCACGTTTCGTTTCTATTCATA
AAACCATCGGCAGGTATAGTGAAGAGGAAGGGGAAAGCTTACACAATCTG
ATTAACCAAGAATTGAGGCGTGTCTGTAGTATAAGGTGTAAACCTCTTAA
GCTGAAACTGGTTTTGGAAGGCGCAGCCTTACGTGCAAAGGCTGACAGAA
CTCTACTAAAGCCTATTTCCCGGAAGTGTCAATCCTGTCATAAGGGTTTT
TATTTGCAAGGGGTTTGCCAATCATGTAATGCAAAAAGATAGTAAATTgt
aatttgatcattttttcattttgtttcaggCTACTCCTTACGGAACATGT
TGCTGTCAATGAATGTAAGATCTTTTAAACCACGTACAGTTGACATGgtg
ctattttcatcaattcttgttatcgTACcaaaggtgatgcaggagatata
aTGGAATATGATAAAGCGATTGTGCAATAGCTATTTTTCTGTCATGGGAC
TCTGTTTAAAGGTGAgattaatatttttgtttaaaacacgAGTACTTTGT
ATACAACACATGTAACATACATATAACCAGATATAACATCAAAAGGCACA
GAATGCGAAAGCACGTGGTAAGTACGTGGATATattttgacctttaaaaa
ttttgatatttttgacaacaacaagtttttttcaaacattttctttcgtA
CTTTACAGTAATtatgtgaacatggtcttagagcTGACCTGTGTCAATGA
CCTGTGAACCtccgtttcgaactagccgtttGTGTAGTGATGTAATATCT
TTTATCAGATTTTCATTCTGATTCtataattgaattttttttgcattgct
ttcacttttctttaccaaaatcttcaaattggAGAAAAATTAATGTTTGA
AACTGTTCGACTTTGAATgaactttaaaagaaaaatttaatgataacAAC
TCTtgtttttgaacaattttcatGCTgaatccaaaatttcaaaccaatat
AGCTAAAAGGTgtcaaaattaatattttcaaagaagattACTGAGCTAAA
AACCCTCAATGAGTCAAAGTTTCCAATTATTACGTtcaaaacaaatataa
aattttcagcAGTTTGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009713XLOC_009713Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017349-exon-sc0000266-1491911889:14058..14157TCONS_00017349-exon-sc0000266-1491911889:14058..14157Clytia hemisphaericaexon
TCONS_00017349-exon-sc0000266-1510915933:14058..14157TCONS_00017349-exon-sc0000266-1510915933:14058..14157Clytia hemisphaericaexon
TCONS_00017349-exon-sc0000266-1575043694:14058..14157TCONS_00017349-exon-sc0000266-1575043694:14058..14157Clytia hemisphaericaexon
TCONS_00017349-exon-sc0000266-1491911889:17237..18027TCONS_00017349-exon-sc0000266-1491911889:17237..18027Clytia hemisphaericaexon
TCONS_00017349-exon-sc0000266-1510915933:17237..18027TCONS_00017349-exon-sc0000266-1510915933:17237..18027Clytia hemisphaericaexon
TCONS_00017349-exon-sc0000266-1575043694:17237..18027TCONS_00017349-exon-sc0000266-1575043694:17237..18027Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000266supercontigsc0000266:14058..18027 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.55492	2.45717	1.34606	1.91788	1.08718	0.889227	1.8454	2.09274	1.7622	1.87181	0.257256	0.389902	1.04939	0.533282	1.84635	0.775252	1.34056	0.571734	0	0.154012	0	4.86553	0	0.255158	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017349 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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