TCONS_00017387 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017387
Unique NameTCONS_00017387
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2139

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017387 ID=TCONS_00017387|Name=TCONS_00017387|organism=Clytia hemisphaerica|type=transcript|length=2139bp
ATTTAATGGTCGTTCGCAGAAACAAGGTTTAACGAATTGAGAGTAGTTTG
GAAAGGTGGTTTCTACGAActgatttaaaagaaaatgttttcatgAGTCT
TCGAatatttcatttgaaatggACAGAAtgtataaaaatgaagaatttca
TACTGAAATTAATCTTATTAAGTGTACATTGTATATTAGATGCTTTTATT
TATGGACAAAGTATGGCTTTTAACGAACAACAAAATCTGAGTTTTGGTGA
GCTTGACACACCGCTAATGTCATTAAAGGAACAGCAAAACGAAAATGACG
ATTTCTTAGTACAGATGTGTCGTGAGCGAATTTATCGCTTGGATTATAAG
AAGATGTTAGAACAATGTNTGATGATTTCTTAGTACAGATGTGTCGTGAG
CGAATTTATCGCTTGGACTATAAGAAGATGTTAGAACAATgctcaaaaag
tttgaaatttgggactcatatttatgatgaaaatttaagaacatgtCCTG
GCTTTACGAAAATTATTGATAGGAAAATCAGAGAAACGGGCGAATATAGt
tctttcaaaatcaaaacatttgataATAACAATATGCCGAAAACTTTTGG
TGGAGATTCGTTTCGGGTTTTCGTAAACGGGACATCTTCGCTAGAAGCGT
TCGTTTACGATCTCGGTGGAGGTCTTTACGAGAGcacctttttgattttg
gaccCTGGTGTGTatgaaataaaagtaatcatgGAGGGGTCTATTTGTAG
TAGTTATGTCGACCCTCCAGATGATTGGTTTAGAAAAGGCGATTTCAACG
GACATTTCCAAGACGTTTGGTCATGGAAGAACACTGTGAAAGCCAAAGAA
TGGCGTTACCTTCTAAGTGAAATGATATGGAAAGAAGTGGCCACTTTTAA
CATTGAAGTGAAACCAGGGAACAAGCATAGAATACAAGGTAGTAAGAGTC
TAACTCTGGCCAGAAGTTTAAGGTTAGTTTTAACTTTTCTGGTGCCAGAT
AAATGATATGCTCCGTCCATATTCACTCGGTCACCTCAACAAAAAACACT
TTCGTCGATATTCTGGGGTCCTATCCGGCAATCAACCAGTAAAAAACGCC
TTAACAGTTAACAGGTAGGTATAGCAGAGCATAAAAGGTATAAACTCTTT
TAAAAGAATAACTCGAGTGAGGGAAATCCTAAATCTATCTTGATTGTCTT
CAAATATACTCATCTCAAAATATTGAACATAAAGATGGATTTAAAATATG
TTGCTTTTTTCCTAGATAATCTAGAGAAGATAAAAGATTGGCAAAACCTC
TGTATGCTGGATATGAAATGTAAATTTCTTGATGATGGTTTCGGAAGATG
GAAAGAAAAGGAATGGTTTCCTTTTGTCAGTGATATCAATACTTTTGGAG
ATGAGCGTTTGAAATTCAGACCGAGAGAAAAAGAGGGGGTGTTGTGGATA
TATGGAGATTGTTATGCTTTTCATCTGTTCGAACAAGTTTGGAATACAAC
ATTATGTAACCAGCAATTCGCAACATGTAAAAAAACATACAACTGGGTGT
ATCCACGAAAACATGTAAACCCCCGCAAAGATTGGACAATACATTTGAAC
AGACATCACGACTTGGACATACCATGGCTTGTCAACTATTTCAAATCTGT
CATCACCAGAAAAGAACTCAAAGAGACAGACAGTGGAATGCTTCTCAATC
TCGGTCTGCATTTTGTACGAACATCCTCATTTGAACAATACAAGACTTTG
ATAGACAGTTTTATAAAAGTTATTCGGGCATCAAAAACAGACGTAGTTTG
GAGAAGCACCACTTCAATTTACAAACGAGAAGATAAAACTcataaaagat
ttcaaaccaATCAACGCGCCTTATTATTCAACGCGTACGCAATGTCAGCT
ATGTGTAAAGCGGGCATCCCGATCATAGACGTGTACCCGATCACCGCAGC
GTATCCCAAAAAACCGAAAGACGGAATACATTTTTCGATGGCTCTTTTAA
AACCTATGGTAGaagttttaaagaaatattACGAATTTTTATAATGTCAT
GTACTTTTGTAGAATATTCGAAATTGGTGATTATTTGTAAgtaacttttt
ttagatttcagtaaatacaaaacctttaatcaaatataa
Run BLAST on NCBI

transcript from alignment at sc0000266:225406..229690-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017387 ID=TCONS_00017387|Name=TCONS_00017387|organism=Clytia hemisphaerica|type=transcript|length=4285bp|location=Sequence derived from alignment at sc0000266:225406..229690- (Clytia hemisphaerica)
ATTTAATGGTCGTTCGCAGAAACAAGGTTTAACGAATTGAGAGTAGTTTG
GAAAGGTGGTTTCTACGAACTGATTTAAAAGAAAATGTTTTCATGAGTCT
TCGAATATTTCATTTGAAATGGACAGAATGTATAAAAATGAAGAATTTCA
TACTGAAATTAATCTTATTAAGTGTACATTGTATATTAGATGCTTTTATT
TATGGACAAAGTATGGCTTTTAACGAACAACAAAATCTGAGTTTTGGTGA
GCTTGACACACCGCTAATGTCATTAAAGGAACAGCAAAACGAAAATGACG
ATTTCTTAGTACAGATGTGTCGTGAGCGAATTTATCGCTTGGATTATAAG
AAGATGTTAGAACAATGTNTGATGATTTCTTAGTACAGATGTGTCGTGAG
CGAATTTATCGCTTGGACTATAAGAAGATGTTAGAACAATGCTCAAAAAG
TTTGAAATTTGGGACTCATATTTATGATGAAAATTTAAGAACATGTCCTG
GCTTTACGAAAATTATTGATAGGAAAATCAGAGAAACGGGCGAATATAGT
TCTTTCAAAATCAAAACATTTGATAATAACAATATGCCGAAAACTTTTGG
TGGAGATTCGTTTCGGGTTTTCGTAAACGGGACATCTTCGCTAGAAGCGT
TCGTTTACGATCTCGGTGGAGGTCTTTACGAGAGCACCTTTTTGATTTTG
GACCCTGGTGTGTATGAAATAAAAGTAATCATGGAGGGGTCTATTTGTAG
TAGTTATGTCGACCCTCCAGATGATTGGTTTAGAAAAGGTAACCACGTGG
CTGTTTTATTTTCTGGGAATCTATCTTTAGCGTTCAGTCTACTACTAATT
CGTGATATGCGCCACTGGAGAGTCGTCTGAGAACTTTTAAAATCTTCCAC
CTAATACGTCACTTAAAAACAATAGAAAAAGTGTATTTGGGTGGAACAAA
AAAAGAAAAGTTGCATAAGTTCGTACAGCCATTGCAGTGGTGCATACCAT
GAATTAGTTCCGTCAATGTAAAACGCCAAAGTGAGAAGACTTTCGAAGCA
AAGCACTGTATCCAGTGGCAAATCTCTGGAGAGAGGTGATTCAAATTTAT
AAAGAAATGAAGATGAAGAATAAACATACAGTGATTTCTCTCGCTAATTC
AAACTTTTATTATTCGAATCTTTCAATAATTCGAACTAATTTTCAAAAAA
CTTCGTAAAATACTCTAACAACTATCAACCTCGTCCCCGTGTATTAACGG
CAGAGAATACCCTCGTGTGGGCTGATACGAGGTATTATCTCACGCTATCA
GTGGCGAAAAAATGCTGATAATACGCAGGGAACAATTATCAGACAGAGGA
GCAAAAAAGTTTACAATAACTAAATTTGATTTCAGGCGATTTCAACGGAC
ATTTCCAAGACGTTTGGTCATGGAAGAACACTGTGAAAGCCAAAGAATGG
CGTTACCTTCTAAGTGAAATGATATGGAAAGAAGTGGCCACTTTTAACAT
TGAAGTGAAACCAGGGAACAAGCATAGAATACAAGGTAGTAAGAGTCTAA
CTCTGGCCAGAAGTTTAAGGTTAGTTTTAACTTTTCTGGTGCCAGATAAA
TGATATGCTCCGTCCATATTCACTCGGTCACCTCAACAAAAAACACTTTC
GTCGATATTCTGGGGTCCTATCCGGCAATCAACCAGTAAAAAACGCCTTA
ACAGTTAACAGGTAGGTATAGCAGAGCATAAAAGGTATAAACTCTTTTAA
AAGAATAACTCGAGTGAGGGAAATCCTAAATCTATCTTGATTGTCTTCAA
ATATACTCATCTCAAAATATTGAACATAAAGATGGATTTAAAATATGTTG
CTTTTTTCCTAGATAATCTAGAGAAGATAAAAGATTGGCAAAACCTCTGT
ATGCTGGATATGAAATGTAAATTTCTTGATGATGGTTTCGGAAGATGGAA
AGAAAAGGAATGGTTTCCTTTTGTCAGTGGTAAGAGATTACCTTTCGTGG
GTTGCAAGATAAGAAATCAAAATTTTCACTTTAAGGTTCGGGATTTCCCC
CTTTTTTGAGACTTTTAAAGGAAACGAAAACCATGAAAAGTCTATAAATC
CCTCTAAGGTTGGGAAATTTTGCAAAAGTCATGCTTAGCGGTAGATAAAT
TGACCTGTTTAATTTTGGTTTCTCCTTCACATCAAACAAAACTTTGCAAC
CAAAACTTATGCGGCTTTATTCTAGAGTATGTTCTCCATGGTTTTTCCTT
AACTGCCGTAAATTCATCATTCCTTGTCCATTTAGATATCAATACTTTTG
GAGATGAGCGTTTGAAATTCAGACCGAGAGAAAAAGAGGGGGTGTTGTGG
ATATATGGAGATTGTTATGCTTTTCATCTGTTCGAACAAGTTTGGAATAC
AACATTATGTAACCAGCAATTCGCAACATGTAAAAAGTAATTTGCAGAAC
AATTTTTTAGATTTTAAATTTCCCTCTGATCCATCCAAGCAGTCAATATT
CGTCAACTTTTTGAATTGCGTGAACATTAGGATTGACAGATCTCTGTTAT
ATATTATATCATGGACTAAGTATTATGGCATTTTTTCAATACTAGGCACA
ATAACCAAATCCCCCTCTCCTACGATCAAAGTTTACAGAAAAAAAAGGTT
TGCTTGGTCAGTACATATCTTGCCTCTACAGCTTTGTCTGGGCTGCGGGG
GAGAGGTCCAATTTCATTAAACTGTTTGACACATTAAACAAAATAAGTTT
TTAGCTGAAACCTCATACACGGGCGATGACAGAGAAAATGTTGTCTATGG
TCCTTGACAAAACGTCAGATAGGAATTTTAACAAGGAAATGTACCCTACA
TATATACCAGAAGAATATAATTATAAGCTTCTTAGATTGACTACTTTTTT
TAAAACAAGAACACAATTTTCATTGAGACTATAAAAGTGGCAAAGTGAAT
GGATTAAAATTTTCTGGTGGAACTGAAAAAAGAGCTTTGTGATTTATTTT
AATTCATTATCTTCCGTTCATAGAACATACAACTGGGTGTATCCACGAAA
ACATGTAAACCCCCGCAAAGATTGGACAATACATTTGAACAGACATCACG
ACTTGGACATACCATGGCTTGTCAACTATTTCAAATCTGTCATCACCAGA
AAAGAACTCAAAGAGACAGACAGTGGAATGCTTCTCAATCTCGGTCTGCA
TTTTGTACGAACATCCTCATTTGAACAATACAAGACTTTGATAGACAGTT
TTATAAAAGTTATTCGGGCATCAAAAACAGACGTAGTTTGGAGAAGCACC
ACTTCAATTTACAAACGAGAAGATAAAACTCATAAAAGATTTCAAACCAA
TCAAGTAGGTGCTGTAATCGGATCTCTTGATGGCCCTTTCTACGGTCCTA
ATTGATTTAACGCATACAGTTGATTCTCTCCCGGGGGGGAGGGGTACTTG
GTCAAAATGGGTGTCAGGTATGTGCGAACCATAAGTGTCCCTTTTTTAAC
TCGTAGCAAGTATTACCTAAACCACATTCCAGCTGTAAGAGGATCACAGC
CTTAGCTGGAATTATAGAAAGAGTCGACTGATAGAGGTTCGAATTAGGAG
AATTGACTGTACTCTCATTATCCAATTTTGAGTTAAACTTAGAGAGAGAG
TTTGTATGAAAAGTGTACGTGTTTTAATTTAACACCGATTTGTTAGAACC
CCAAAAATATAAGTCAAAATTCAAGACTTAAGGGCTCTGACCATAGTCAA
TTTTCAATATTTGCCACGTACAAAATATGAATTTCTACTTGATGTAGCAC
ACAAAACTGTGGCATGTTATACATTCTCTGTTAGGCCAATTATCCTTGAG
TCTGAAAATTTAAGAATAAAAATGAAAATTTGATGAAGTAGAAAATGAAG
AATTTTGCGTAGAAGAGATCATATAATCCAAAATTTGCAACAACAGAGTA
TTTAAGGGCCAAGAGTTTTTATATTTTCCTTACATTTTTACCAAAAACTT
TTCTTTTCAGCGCGCCTTATTATTCAACGCGTACGCAATGTCAGCTATGT
GTAAAGCGGGCATCCCGATCATAGACGTGTACCCGATCACCGCAGCGTAT
CCCAAAAAACCGAAAGACGGAATACATTTTTCGATGGCTCTTTTAAAACC
TATGGTAGAAGTTTTAAAGAAATATTACGAATTTTTATAATGTCATGTAC
TTTTGTAGAATATTCGAAATTGGTGATTATTTGTAAGTAACTTTTTTTAG
ATTTCAGTAAATACAAAACCTTTAATCAAATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009734XLOC_009734Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017387-exon-sc0000266-1575043694:228903..229690TCONS_00017387-exon-sc0000266-1575043694:228903..229690Clytia hemisphaericaexon
TCONS_00017387-exon-sc0000266-1575043694:227712..228305TCONS_00017387-exon-sc0000266-1575043694:227712..228305Clytia hemisphaericaexon
TCONS_00017387-exon-sc0000266-1575043694:227255..227405TCONS_00017387-exon-sc0000266-1575043694:227255..227405Clytia hemisphaericaexon
TCONS_00017387-exon-sc0000266-1575043694:226337..226667TCONS_00017387-exon-sc0000266-1575043694:226337..226667Clytia hemisphaericaexon
TCONS_00017387-exon-sc0000266-1575043694:225406..225680TCONS_00017387-exon-sc0000266-1575043694:225406..225680Clytia hemisphaericaexon
TCONS_00017387-exon-sc0000266-1510915933:228903..229690TCONS_00017387-exon-sc0000266-1510915933:228903..229690Clytia hemisphaericaexon
TCONS_00017387-exon-sc0000266-1510915933:227712..228305TCONS_00017387-exon-sc0000266-1510915933:227712..228305Clytia hemisphaericaexon
TCONS_00017387-exon-sc0000266-1510915933:227255..227405TCONS_00017387-exon-sc0000266-1510915933:227255..227405Clytia hemisphaericaexon
TCONS_00017387-exon-sc0000266-1510915933:226337..226667TCONS_00017387-exon-sc0000266-1510915933:226337..226667Clytia hemisphaericaexon
TCONS_00017387-exon-sc0000266-1510915933:225406..225680TCONS_00017387-exon-sc0000266-1510915933:225406..225680Clytia hemisphaericaexon
TCONS_00017387-exon-sc0000266-1491911889:228903..229690TCONS_00017387-exon-sc0000266-1491911889:228903..229690Clytia hemisphaericaexon
TCONS_00017387-exon-sc0000266-1491911889:227712..228305TCONS_00017387-exon-sc0000266-1491911889:227712..228305Clytia hemisphaericaexon
TCONS_00017387-exon-sc0000266-1491911889:227255..227405TCONS_00017387-exon-sc0000266-1491911889:227255..227405Clytia hemisphaericaexon
TCONS_00017387-exon-sc0000266-1491911889:226337..226667TCONS_00017387-exon-sc0000266-1491911889:226337..226667Clytia hemisphaericaexon
TCONS_00017387-exon-sc0000266-1491911889:225406..225680TCONS_00017387-exon-sc0000266-1491911889:225406..225680Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000266supercontigsc0000266:225406..229690 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0814504	0.255849	0.101088	0.206384	0.415012	0.212331	0.0990148	0.480531	0.114665	0.340321	0.185584	0.451135	0.147997	0	0.383359	0	0	0.164371	0.11724	0.096721	0	0.152591	0.140177	0.130072	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017387 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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