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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017394 ID=TCONS_00017394|Name=TCONS_00017394|organism=Clytia hemisphaerica|type=transcript|length=1633bp
GTGGAATTCACAATTTGTAGTAACGAAAATGTTCAAATTGTGTCATTGAT
ATCAATTAAGTGAGATCAAGCATGGAGGAGTTGTTTTCTGGCGATAtaca
ttttcagaaaataggACCAGACATGGAGGTTGTTTCAAATGTCTTACTGA
ATCTATTTAGCGAACATCTTAACGTCGTGATATGTTAAAATATGTAAGAA
GGGTTACTTTTAAGTGGAACGAACAAGGGGCCACCTGTCACACATCATAA
AATCTCCATCGCATTACATCCTGTTCTCATTGAAGTCAACAACAGCCATG
CACACTTCATTCTCCTCTCCACTTCCTCTTTCTTGTCTTCGATGTCGAAC
ATAACTATATATCCCTCCGATCAACATGAAACCTATCATGACCAAAACCA
TGTACAAATGCTCCAGTGTGAACATTTCCCCAAACTTATGCACGATCAGA
ACCTCTAGATAAATATTAGACGCATACCTAGCATGGATTTCCAACTTATA
AATATAATTGAGTGCATAGTTATCACATTTGGCTCGGATTTGATCGATTT
CTGATTCACTTTGATTGACAGGTGAATCTCGTTCACCAATCAGAAACACG
TTGATGGGTAGGGTGTATTTAGCGACCGCCCGCAATTTTCGACGATGTAA
ATCGGTATGCGCGTATGCTGCAATATCAATGGGCATTAATCCAGCGAAAA
TTTCATCATCATACTGTACTGACGTCAGCAAATCGTCATATGTCTTAAAA
AGATGATTCCGCGTTGAAAAAGTCTTATTCCCAAACTGCGCTTCATACGA
ATCTTGCAACACAGCAACATCCTTTTGGTAGATAGTAAATAGCGTATCAT
CGAACACGTGACTTGTGATCATTCCCATGAGAATAGAAAACACCATCAAC
GCGTAATACATCCACACCACAGCAAACAAGCGTCCGACACGTGACTTTGG
GATGACGTCACCATAACCAACTGTTGTCATAGTAACGAAAGCCCACCAAA
TACTTTGGATGATTCCCTGACAAAAGGAGAGTTCTTCATCTcttgatttt
tccaaaagccAAAACAAAAGACCAGCCATGAAACAGGTAGAGACGAAGAA
AGCATACATAGAACTCATCTCTACAAGAGCACTCGACACCTTACTGCTCA
AATACAAACGATTCTCATTCACAATAATCGCTAATTCATCCATTTGTAAA
ATCTGATTTGGTACTAGACCTTTTTCGGACAGAGTTTCAGAAATTTCGTC
TTTGACAGTTGCTCTGGTCAAAATGGGCCCCCAAAATTTCCCTGCAGTTG
AAGTCTCATTGACCATATGTTCTACAACAGCTTCCTCGTCCGGCATTCTC
GTATACCGGGCAAACTGTTGTCCGGTAGTTGCGTTTTCACCAAGACATTG
TGATTGCAATTCTGTAAAAATCTCCGGAATAATACCAACTGCTTGTCCAG
TATTTTTGTCTTGGTAGATAAGCGGTGGTATGTTCCAGTACATGATACTG
TAGACTGGTTCTTTAAGAATATTGGGAGGAGTTTGCATCGAGGTTACTGT
TCTTGTCACGTTAGCATACACCATTGAAATAGAACAACTGAGTAAAAAAC
ATACAATCCGCTTCATTTTTGcaataaatttta Run BLAST on NCBI protein sequence of TCONS_00017394-protein >TCONS_00017394-protein ID=TCONS_00017394-protein|Name=TCONS_00017394-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp
KFIAKMKRIVCFLLSCSISMVYANVTRTVTSMQTPPNILKEPVYSIMYWN
IPPLIYQDKNTGQAVGIIPEIFTELQSQCLGENATTGQQFARYTRMPDEE
AVVEHMVNETSTAGKFWGPILTRATVKDEISETLSEKGLVPNQILQMDEL
AIIVNENRLYLSSKVSSALVEMSSMYAFFVSTCFMAGLLFWLLEKSRDEE
LSFCQGIIQSIWWAFVTMTTVGYGDVIPKSRVGRLFAVVWMYYALMVFSI
LMGMITSHVFDDTLFTIYQKDVAVLQDSYEAQFGNKTFSTRNHLFKTYDD
LLTSVQYDDEIFAGLMPIDIAAYAHTDLHRRKLRAVAKYTLPINVFLIGE
RDSPVNQSESEIDQIRAKCDNYALNYIYKLEIHARYASNIYLEVLIVHKF
GEMFTLEHLYMVLVMIGFMLIGGIYSYVRHRRQERGSGEENEVCMAVVDF
NENRM Run BLAST on NCBI transcript from alignment at sc0000266:241461..243093 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017394 ID=TCONS_00017394|Name=TCONS_00017394|organism=Clytia hemisphaerica|type=transcript|length=1633bp|location=Sequence derived from alignment at sc0000266:241461..243093 (Clytia hemisphaerica)
taaaatttattgCAAAAATGAAGCGGATTGTATGTTTTTTACTCAGTTGT
TCTATTTCAATGGTGTATGCTAACGTGACAAGAACAGTAACCTCGATGCA
AACTCCTCCCAATATTCTTAAAGAACCAGTCTACAGTATCATGTACTGGA
ACATACCACCGCTTATCTACCAAGACAAAAATACTGGACAAGCAGTTGGT
ATTATTCCGGAGATTTTTACAGAATTGCAATCACAATGTCTTGGTGAAAA
CGCAACTACCGGACAACAGTTTGCCCGGTATACGAGAATGCCGGACGAGG
AAGCTGTTGTAGAACATATGGTCAATGAGACTTCAACTGCAGGGAAATTT
TGGGGGCCCATTTTGACCAGAGCAACTGTCAAAGACGAAATTTCTGAAAC
TCTGTCCGAAAAAGGTCTAGTACCAAATCAGATTTTACAAATGGATGAAT
TAGCGATTATTGTGAATGAGAATCGTTTGTATTTGAGCAGTAAGGTGTCG
AGTGCTCTTGTAGAGATGAGTTCTATGTATGCTTTCTTCGTCTCTACCTG
TTTCATGGCTGGTCTTTTGTTTTggcttttggaaaaatcaagAGATGAAG
AACTCTCCTTTTGTCAGGGAATCATCCAAAGTATTTGGTGGGCTTTCGTT
ACTATGACAACAGTTGGTTATGGTGACGTCATCCCAAAGTCACGTGTCGG
ACGCTTGTTTGCTGTGGTGTGGATGTATTACGCGTTGATGGTGTTTTCTA
TTCTCATGGGAATGATCACAAGTCACGTGTTCGATGATACGCTATTTACT
ATCTACCAAAAGGATGTTGCTGTGTTGCAAGATTCGTATGAAGCGCAGTT
TGGGAATAAGACTTTTTCAACGCGGAATCATCTTTTTAAGACATATGACG
ATTTGCTGACGTCAGTACAGTATGATGATGAAATTTTCGCTGGATTAATG
CCCATTGATATTGCAGCATACGCGCATACCGATTTACATCGTCGAAAATT
GCGGGCGGTCGCTAAATACACCCTACCCATCAACGTGTTTCTGATTGGTG
AACGAGATTCACCTGTCAATCAAAGTGAATCAGAAATCGATCAAATCCGA
GCCAAATGTGATAACTATGCACTCAATTATATTTATAAGTTGGAAATCCA
TGCTAGGTATGCGTCTAATATTTATCTAGAGGTTCTGATCGTGCATAAGT
TTGGGGAAATGTTCACACTGGAGCATTTGTACATGGTTTTGGTCATGATA
GGTTTCATGTTGATCGGAGGGATATATAGTTATGTTCGACATCGAAGACA
AGAAAGAGGAAGTGGAGAGGAGAATGAAGTGTGCATGGCTGTTGTTGACT
TCAATGAGAACAGGATGTAATGCGATGGAGATTTTATGATGTGTGACAGG
TGGCCCCTTGTTCGTTCCACTTAAAAGTAACCCTTCTTACATATTTTAAC
ATATCACGACGTTAAGATGTTCGCTAAATAGATTCAGTAAGACATTTGAA
ACAACCTCCATGTCTGGTcctattttctgaaaatgtaTATCGCCAGAAAA
CAACTCCTCCATGCTTGATCTCACTTAATTGATATCAATGACACAATTTG
AACATTTTCGTTACTACAAATTGTGAATTCCAC Coding sequence (CDS) from alignment at sc0000266:241461..243093 >TCONS_00017394 ID=TCONS_00017394|Name=TCONS_00017394|organism=Clytia hemisphaerica|type=CDS|length=1368bp|location=Sequence derived from alignment at sc0000266:241461..243093 (Clytia hemisphaerica)
aaatttattgCAAAAATGAAGCGGATTGTATGTTTTTTACTCAGTTGTTC
TATTTCAATGGTGTATGCTAACGTGACAAGAACAGTAACCTCGATGCAAA
CTCCTCCCAATATTCTTAAAGAACCAGTCTACAGTATCATGTACTGGAAC
ATACCACCGCTTATCTACCAAGACAAAAATACTGGACAAGCAGTTGGTAT
TATTCCGGAGATTTTTACAGAATTGCAATCACAATGTCTTGGTGAAAACG
CAACTACCGGACAACAGTTTGCCCGGTATACGAGAATGCCGGACGAGGAA
GCTGTTGTAGAACATATGGTCAATGAGACTTCAACTGCAGGGAAATTTTG
GGGGCCCATTTTGACCAGAGCAACTGTCAAAGACGAAATTTCTGAAACTC
TGTCCGAAAAAGGTCTAGTACCAAATCAGATTTTACAAATGGATGAATTA
GCGATTATTGTGAATGAGAATCGTTTGTATTTGAGCAGTAAGGTGTCGAG
TGCTCTTGTAGAGATGAGTTCTATGTATGCTTTCTTCGTCTCTACCTGTT
TCATGGCTGGTCTTTTGTTTTggcttttggaaaaatcaagAGATGAAGAA
CTCTCCTTTTGTCAGGGAATCATCCAAAGTATTTGGTGGGCTTTCGTTAC
TATGACAACAGTTGGTTATGGTGACGTCATCCCAAAGTCACGTGTCGGAC
GCTTGTTTGCTGTGGTGTGGATGTATTACGCGTTGATGGTGTTTTCTATT
CTCATGGGAATGATCACAAGTCACGTGTTCGATGATACGCTATTTACTAT
CTACCAAAAGGATGTTGCTGTGTTGCAAGATTCGTATGAAGCGCAGTTTG
GGAATAAGACTTTTTCAACGCGGAATCATCTTTTTAAGACATATGACGAT
TTGCTGACGTCAGTACAGTATGATGATGAAATTTTCGCTGGATTAATGCC
CATTGATATTGCAGCATACGCGCATACCGATTTACATCGTCGAAAATTGC
GGGCGGTCGCTAAATACACCCTACCCATCAACGTGTTTCTGATTGGTGAA
CGAGATTCACCTGTCAATCAAAGTGAATCAGAAATCGATCAAATCCGAGC
CAAATGTGATAACTATGCACTCAATTATATTTATAAGTTGGAAATCCATG
CTAGGTATGCGTCTAATATTTATCTAGAGGTTCTGATCGTGCATAAGTTT
GGGGAAATGTTCACACTGGAGCATTTGTACATGGTTTTGGTCATGATAGG
TTTCATGTTGATCGGAGGGATATATAGTTATGTTCGACATCGAAGACAAG
AAAGAGGAAGTGGAGAGGAGAATGAAGTGTGCATGGCTGTTGTTGACTTC
AATGAGAACAGGATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017394-exon-sc0000266-1491911889:241461..243093 | TCONS_00017394-exon-sc0000266-1491911889:241461..243093 | Clytia hemisphaerica | exon |
| TCONS_00017394-exon-sc0000266-1510915933:241461..243093 | TCONS_00017394-exon-sc0000266-1510915933:241461..243093 | Clytia hemisphaerica | exon |
| TCONS_00017394-exon-sc0000266-1575043694:241461..243093 | TCONS_00017394-exon-sc0000266-1575043694:241461..243093 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000266 | supercontig | sc0000266:241461..243093 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013099 | K_chnl_dom |
Blast
The following BLAST results are available for this feature:
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