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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017398 ID=TCONS_00017398|Name=TCONS_00017398|organism=Clytia hemisphaerica|type=transcript|length=1010bp
AAGTAAAAAGATGAAAGAATTTTCAACGAATAATTACTACGATAACATCT
TGTTCAGCTCCAATCAGAGTTTCTGTTTACTAATGGAAGAGATCAAAGAT
CGAAGTTGTTTACAACGTAAATTATGCATTTCCTACATCAAATTTCACGG
CCAGAAGACCTTACCTGTTCACCGTAATGCTATGATGCTCACATTCAATT
CATCGTTTGCTCTGGTGAATCAACATCGTTACCAACTTTCACCGAACAGT
CAATTCCTGGCTGTCATCCATTTCACCAATAACAACAAACTACTCAATCT
cattaaaatcgaaagtgaaagtgattcAGATATTTTGAGACTTTCCCATT
ACGCGCAAATCAGTCTTTCTAATCATTTCTTATGGAATTATTTGAAGGAC
ATTCGATTTAATACCAGTGAAAATAAGGTCCTCTTAGTTTCCTCCAGAAC
AGTGAAGCAGGATAATGCAGTAGTGTGCACCTTGAAAAACAACAATACAT
ACGGACTAGAATTTCTACACAACATAAAAAAGACTGACACTGTGTCATAT
TTCTTGGTCACAGATTTTGTATATAAAGATGTTTTAATCAGAGCCAGCAC
TTGTGGCCAAATCGAGGTTCAAAAACTAACCGATACTGAACAGAGAAATA
TCAAAGATTTCAATTTGAAAGATATCGAGGTTACCAAGCAACTGACGTGC
TTCTTTGCTCATCCATGTTTCAAAACATTGAATCTATATGCTGGTTGCAC
TACTGGAGAGATCTTTGTTGTAGACATACATAAAGGGATCCtttgttcaa
aaattatcaTTGGCAACGAGACTTTCCGTATATCCAGTTTGCATGTGAAC
TGGTCTGGTTCCGAGatctttgctttgaaagaaagaaGGAAGAAAGACAG
GGCTAATGTTAGAATATGTTGCTTGCCATCACAAAAAATGTTAACATTAG
AAGAACTCTCTGCAAAAACCATCCTGGAAAACTTTCCGATGAATTACCTG
AAAACTCTAC Run BLAST on NCBI protein sequence of TCONS_00017398-protein >TCONS_00017398-protein ID=TCONS_00017398-protein|Name=TCONS_00017398-protein|organism=Clytia hemisphaerica|type=polypeptide|length=336bp
SKKMKEFSTNNYYDNILFSSNQSFCLLMEEIKDRSCLQRKLCISYIKFHG
QKTLPVHRNAMMLTFNSSFALVNQHRYQLSPNSQFLAVIHFTNNNKLLNL
IKIESESDSDILRLSHYAQISLSNHFLWNYLKDIRFNTSENKVLLVSSRT
VKQDNAVVCTLKNNNTYGLEFLHNIKKTDTVSYFLVTDFVYKDVLIRAST
CGQIEVQKLTDTEQRNIKDFNLKDIEVTKQLTCFFAHPCFKTLNLYAGCT
TGEIFVVDIHKGILCSKIIIGNETFRISSLHVNWSGSEIFALKERRKKDR
ANVRICCLPSQKMLTLEELSAKTILENFPMNYLKTL Run BLAST on NCBI transcript from alignment at sc0000266:323427..324436 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017398 ID=TCONS_00017398|Name=TCONS_00017398|organism=Clytia hemisphaerica|type=transcript|length=1010bp|location=Sequence derived from alignment at sc0000266:323427..324436 (Clytia hemisphaerica)
GTAGAGTTTTCAGGTAATTCATCGGAAAGTTTTCCAGGATGGTTTTTGCA
GAGAGTTCTTCTAATGTTAACATTTTTTGTGATGGCAAGCAACATATTCT
AACATTAGCCCTGTCTTTCTTCCttctttctttcaaagcaaagatCTCGG
AACCAGACCAGTTCACATGCAAACTGGATATACGGAAAGTCTCGTTGCCA
AtgataatttttgaacaaaGGATCCCTTTATGTATGTCTACAACAAAGAT
CTCTCCAGTAGTGCAACCAGCATATAGATTCAATGTTTTGAAACATGGAT
GAGCAAAGAAGCACGTCAGTTGCTTGGTAACCTCGATATCTTTCAAATTG
AAATCTTTGATATTTCTCTGTTCAGTATCGGTTAGTTTTTGAACCTCGAT
TTGGCCACAAGTGCTGGCTCTGATTAAAACATCTTTATATACAAAATCTG
TGACCAAGAAATATGACACAGTGTCAGTCTTTTTTATGTTGTGTAGAAAT
TCTAGTCCGTATGTATTGTTGTTTTTCAAGGTGCACACTACTGCATTATC
CTGCTTCACTGTTCTGGAGGAAACTAAGAGGACCTTATTTTCACTGGTAT
TAAATCGAATGTCCTTCAAATAATTCCATAAGAAATGATTAGAAAGACTG
ATTTGCGCGTAATGGGAAAGTCTCAAAATATCTgaatcactttcactttc
gattttaatgAGATTGAGTAGTTTGTTGTTATTGGTGAAATGGATGACAG
CCAGGAATTGACTGTTCGGTGAAAGTTGGTAACGATGTTGATTCACCAGA
GCAAACGATGAATTGAATGTGAGCATCATAGCATTACGGTGAACAGGTAA
GGTCTTCTGGCCGTGAAATTTGATGTAGGAAATGCATAATTTACGTTGTA
AACAACTTCGATCTTTGATCTCTTCCATTAGTAAACAGAAACTCTGATTG
GAGCTGAACAAGATGTTATCGTAGTAATTATTCGTTGAAAATTCTTTCAT
CTTTTTACTT Coding sequence (CDS) from alignment at sc0000266:323427..324436 >TCONS_00017398 ID=TCONS_00017398|Name=TCONS_00017398|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at sc0000266:323427..324436 (Clytia hemisphaerica)
TAGAGTTTTCAGGTAATTCATCGGAAAGTTTTCCAGGATGGTTTTTGCAG
AGAGTTCTTCTAATGTTAACATTTTTTGTGATGGCAAGCAACATATTCTA
ACATTAGCCCTGTCTTTCTTCCttctttctttcaaagcaaagatCTCGGA
ACCAGACCAGTTCACATGCAAACTGGATATACGGAAAGTCTCGTTGCCAA
tgataatttttgaacaaaGGATCCCTTTATGTATGTCTACAACAAAGATC
TCTCCAGTAGTGCAACCAGCATATAGATTCAATGTTTTGAAACATGGATG
AGCAAAGAAGCACGTCAGTTGCTTGGTAACCTCGATATCTTTCAAATTGA
AATCTTTGATATTTCTCTGTTCAGTATCGGTTAGTTTTTGAACCTCGATT
TGGCCACAAGTGCTGGCTCTGATTAAAACATCTTTATATACAAAATCTGT
GACCAAGAAATATGACACAGTGTCAGTCTTTTTTATGTTGTGTAGAAATT
CTAGTCCGTATGTATTGTTGTTTTTCAAGGTGCACACTACTGCATTATCC
TGCTTCACTGTTCTGGAGGAAACTAAGAGGACCTTATTTTCACTGGTATT
AAATCGAATGTCCTTCAAATAATTCCATAAGAAATGATTAGAAAGACTGA
TTTGCGCGTAATGGGAAAGTCTCAAAATATCTgaatcactttcactttcg
attttaatgAGATTGAGTAGTTTGTTGTTATTGGTGAAATGGATGACAGC
CAGGAATTGACTGTTCGGTGAAAGTTGGTAACGATGTTGATTCACCAGAG
CAAACGATGAATTGAATGTGAGCATCATAGCATTACGGTGAACAGGTAAG
GTCTTCTGGCCGTGAAATTTGATGTAGGAAATGCATAATTTACGTTGTAA
ACAACTTCGATCTTTGATCTCTTCCATTAGTAAACAGAAACTCTGATTGG
AGCTGAACAAGATGTTATCGTAGTAATTATTCGTTGAAAATTCTTTCATC
TTTTTACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017398-exon-sc0000266-1491911889:323427..324436 | TCONS_00017398-exon-sc0000266-1491911889:323427..324436 | Clytia hemisphaerica | exon |
| TCONS_00017398-exon-sc0000266-1510915933:323427..324436 | TCONS_00017398-exon-sc0000266-1510915933:323427..324436 | Clytia hemisphaerica | exon |
| TCONS_00017398-exon-sc0000266-1575043694:323427..324436 | TCONS_00017398-exon-sc0000266-1575043694:323427..324436 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000266 | supercontig | sc0000266:323427..324436 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
| IPR017986 | WD40_repeat_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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