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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017409 ID=TCONS_00017409|Name=TCONS_00017409|organism=Clytia hemisphaerica|type=transcript|length=1892bp
AAGTACGCTGATTTCAACATTTTGAATCAAAGCAAATTTCATCGATCGAC
CATCGAAGCGGAGATTGGGATGTGTTCATGTTATCTCATGATCAATGGTG
GTACTCATTCAGCTCTGTCTAATAGACCAGCTGTTATGAACAACCTCCGA
ACGTCATGCGGTACAACATACTTGAACCCTCAAAAACAAGGTAATTCATC
ATTTTGCTTGATATTTTgctatattcatgatatgcaccactggagagtct
tctgagaacttttaaaattttccacctaaTACGTCACAATACGTCTTAAA
Ctatagaaaaattgaaagtattgggtggaacgaaaacagaaaagttgcat
aattgtggtgcatatcatgaatatattgatatttttcttaagTGTTCGCC
TGTGAGAATCATCTCAACGGAATTTACAGACGTGGATTTGTCTACTGAAA
CAAGAAGAGAGTCTCATCAAGCAGAGCAAAAAACATTCCAGCAGAACAGA
GCATTGCATTGTCTTCCTATGAACTTTTTGTTCTCGACTCGATTGAAAAT
ATtcataaagaaaacaattttaaagaaaCAAGAAATACACCTGATTATTA
TAATTGTCAAATTTTTCTGACAtcgtttttttctctttgtatCGAAAAAT
CTCTCACTTCAGGCTAGGTCGTTGGCATCTGTCAGACATTCAACCCAAAG
TAGTGGATTGATTGAATGAGCACACTCATAAGTCTCTCCTCCTTCAATAT
GACCATGGTAATTGCACTGTCATCCAGTGTAGAAATTAGCTTCCTAATAT
TTCAGTTGATAACATACCAAATACTACTAACCAATTTATGACACTCAGga
aatttgcttttttttacCAGTGGCGTTGTATTTTCTGGAAGGAGACCAGA
GCTAATGTTTTCACAACTGCGCTCCATTCTCGATGCCTTTATTGTGTTTT
TTTGCTCCTTAGAAATCTATTTTCATTCTCGATTGGTCATAGTTTAATTG
GTCGTTGTTCTTAGCCCTGTAATAGGGGATGGGGATACTTGGCGTCCCCG
TGGACAAGTACAGATCTCAAAGAATCAACTGGACGGACGCAGCGCCACTG
GGCTATCAACTATTAACTATAAAAGCCTTAGTCTACTCAGTCAACTAAAC
TTAGTCATTTTCAACGTTGAAGCCTGTTAAACTAAAGCTTGACATCTAAC
TAACCTAGAAAAATAGAATTCGTTAAAATCCACAGTCAAAAAACACTACA
GCCAATATGGTCAATTTTCCCATCCCGAATatccttttattttatttttc
gcgGATTCAAATCAAAACTTTGAGTAAATAAACTCTGATTTGCTAAAAAA
TTGACACAAAAATACATATTGTTTACATATACTTTTTTGTATGTCTCAGA
CATCTAGAGTTTGTTTACTCAAAATTATTTATGACTTATATAGACATACA
AGGCAGAACCCATGTATTGGCCTGAATACATAGATTtatctaaaaaactt
ttgagttttttccACAATTCTAAGTTTGGCGTCTAACTCATAAAATTTTT
CACGATTTAGGCACGGAATGCGACATCAACCATTCACTTGAGCCTAACTC
TGATGGTAAGAATGGGCTAACCTTACAGGGCTATTGACGAACCTTTCTCA
TTGGCCCTTCCCCCTTCTTCATCTGGAGTCATTTCCTGGAAATTTGGGAA
AACCCAtctggaaaataaaattttcatggAAAAGGACTGGAAAACAAATA
TCGATGACTGTTTCAGGAGATTTAAAGAAGCCCTTCGAAATCTCCAATAA
CCTTGGAAATTCCTCTTGGAAGATCAAGGCTTAGAACCCCGGGAAAGCTC
CTCGATACCACTGCATAGGGCAACTGTCATAATGCTACAAGC Run BLAST on NCBI transcript from alignment at sc0000267:88181..90072+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017409 ID=TCONS_00017409|Name=TCONS_00017409|organism=Clytia hemisphaerica|type=transcript|length=1892bp|location=Sequence derived from alignment at sc0000267:88181..90072+ (Clytia hemisphaerica)
AAGTACGCTGATTTCAACATTTTGAATCAAAGCAAATTTCATCGATCGAC
CATCGAAGCGGAGATTGGGATGTGTTCATGTTATCTCATGATCAATGGTG
GTACTCATTCAGCTCTGTCTAATAGACCAGCTGTTATGAACAACCTCCGA
ACGTCATGCGGTACAACATACTTGAACCCTCAAAAACAAGGTAATTCATC
ATTTTGCTTGATATTTTgctatattcatgatatgcaccactggagagtct
tctgagaacttttaaaattttccacctaaTACGTCACAATACGTCTTAAA
Ctatagaaaaattgaaagtattgggtggaacgaaaacagaaaagttgcat
aattgtggtgcatatcatgaatatattgatatttttcttaagTGTTCGCC
TGTGAGAATCATCTCAACGGAATTTACAGACGTGGATTTGTCTACTGAAA
CAAGAAGAGAGTCTCATCAAGCAGAGCAAAAAACATTCCAGCAGAACAGA
GCATTGCATTGTCTTCCTATGAACTTTTTGTTCTCGACTCGATTGAAAAT
ATtcataaagaaaacaattttaaagaaaCAAGAAATACACCTGATTATTA
TAATTGTCAAATTTTTCTGACAtcgtttttttctctttgtatCGAAAAAT
CTCTCACTTCAGGCTAGGTCGTTGGCATCTGTCAGACATTCAACCCAAAG
TAGTGGATTGATTGAATGAGCACACTCATAAGTCTCTCCTCCTTCAATAT
GACCATGGTAATTGCACTGTCATCCAGTGTAGAAATTAGCTTCCTAATAT
TTCAGTTGATAACATACCAAATACTACTAACCAATTTATGACACTCAGga
aatttgcttttttttacCAGTGGCGTTGTATTTTCTGGAAGGAGACCAGA
GCTAATGTTTTCACAACTGCGCTCCATTCTCGATGCCTTTATTGTGTTTT
TTTGCTCCTTAGAAATCTATTTTCATTCTCGATTGGTCATAGTTTAATTG
GTCGTTGTTCTTAGCCCTGTAATAGGGGATGGGGATACTTGGCGTCCCCG
TGGACAAGTACAGATCTCAAAGAATCAACTGGACGGACGCAGCGCCACTG
GGCTATCAACTATTAACTATAAAAGCCTTAGTCTACTCAGTCAACTAAAC
TTAGTCATTTTCAACGTTGAAGCCTGTTAAACTAAAGCTTGACATCTAAC
TAACCTAGAAAAATAGAATTCGTTAAAATCCACAGTCAAAAAACACTACA
GCCAATATGGTCAATTTTCCCATCCCGAATatccttttattttatttttc
gcgGATTCAAATCAAAACTTTGAGTAAATAAACTCTGATTTGCTAAAAAA
TTGACACAAAAATACATATTGTTTACATATACTTTTTTGTATGTCTCAGA
CATCTAGAGTTTGTTTACTCAAAATTATTTATGACTTATATAGACATACA
AGGCAGAACCCATGTATTGGCCTGAATACATAGATTtatctaaaaaactt
ttgagttttttccACAATTCTAAGTTTGGCGTCTAACTCATAAAATTTTT
CACGATTTAGGCACGGAATGCGACATCAACCATTCACTTGAGCCTAACTC
TGATGGTAAGAATGGGCTAACCTTACAGGGCTATTGACGAACCTTTCTCA
TTGGCCCTTCCCCCTTCTTCATCTGGAGTCATTTCCTGGAAATTTGGGAA
AACCCAtctggaaaataaaattttcatggAAAAGGACTGGAAAACAAATA
TCGATGACTGTTTCAGGAGATTTAAAGAAGCCCTTCGAAATCTCCAATAA
CCTTGGAAATTCCTCTTGGAAGATCAAGGCTTAGAACCCCGGGAAAGCTC
CTCGATACCACTGCATAGGGCAACTGTCATAATGCTACAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017409-exon-sc0000267-1491911889:88181..90072 | TCONS_00017409-exon-sc0000267-1491911889:88181..90072 | Clytia hemisphaerica | exon |
| TCONS_00017409-exon-sc0000267-1510915933:88181..90072 | TCONS_00017409-exon-sc0000267-1510915933:88181..90072 | Clytia hemisphaerica | exon |
| TCONS_00017409-exon-sc0000267-1575043694:88181..90072 | TCONS_00017409-exon-sc0000267-1575043694:88181..90072 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000267 | supercontig | sc0000267:88181..90072 + |
Blast
The following BLAST results are available for this feature:
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