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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017413 ID=TCONS_00017413|Name=TCONS_00017413|organism=Clytia hemisphaerica|type=transcript|length=1909bp
GGGCAAAATAAACTGGAAACCTAGCACCCTTGCAAATTTGCAAACGACAA
AATTTCTAACTAATTTGGTTCTTTAGAAATGCCACTCTTTTAAAAAGCTA
TGGGTGATGAGGcgaaattaaagaaattaaaacaaGCTTACTTAGACGAC
TTACATTCACATGCTGGGAAATTGTGtctatctcataaaaagaaGTTTGC
AAAATGCATGTCTGAGTCTGTATTCAACTTTTGTGGTGTTCACTTGAGAG
AATTTACAGTCTGTGCGAGGAAGACTTTTGAAGAGctcaaagaagaaaat
aaagaaattcttGAGTTCAAAATAGATCCCTCTGAAGAAGTGAAAAAGGA
CTAAGTTTGCCCATCATCAAAGCAAAATGCTACGATTTAATCACATCAGA
TGTTTGAAGCAATCCGTACAAATCAGTGGTTGGTATGCTGCTGTGAGAGC
CTCAACTCAGTGTGTAACAGATGCTGAAAAGATGATCCAAAAGGTCTTGG
AAACCAATTCCAATCatccagaatggaaaaatattaCCAAAGATCGAAAA
CTTTTACCAATGATTGCAAACAATCTTTCGAGTATGGGAAGGTTTGAAGA
ATTAGACCAGCTGTTTGATAAAGTTGGTATTGATAGTTGCTCCCTTGGTA
TGCAAACCACATTGCTGAGGTCTTACATAGAGAGGCAGAATTGGGAAAGT
GCCTTTGGCTTATTAAAAAATTTAGAGGGTAAATTGAAGCATACAAGGAT
TCATCATGAATTAGTTCAAAACCTTTGCATATACAGTGATGTTCAAAAGG
TGTTCCATCATTTTGGAATGCTTGTTGATAAAGAATCTTGTTTCAAATTT
AAGCGAAGTCAAAACACTGCCCAAGAGACTTTTCAAGCAATTTTACAATT
CCTTATGGAAAATGAACATGCCATCTCTGAAAAAATGTTGACAAGTTTGA
TCCAGTTTATGCATATTGCTGATATTTCTGTTGACTTGATAGCTCTGGAG
AATTTACACAAGTTATTTTTATCTTTGGAATATGAATGTAAGCTATCCAA
AATTGAGGAGCTGGAATTGTTAGACGAGATAAAAGAAAGTCATAGCAAAG
ATGAGAAATCTTTTGTAACAGAATTGAAAGTAGgtatagaaaaaaaactt
attgaaaatgGAGGGCATTCATTTCTCGAGAATTTAAAAGTAATGAAAAA
AGAAGCTTACATTATCGATGTTGCTAATGTTTTATACTACCAATCTGAAA
AACAAAGCGGACCTAATATTTTGAGATTAAAGAACATTGTCAGTAGTCTT
GTATCTCTAAATCAACACAAAAAACGCTCAAAAAGTGTGATATTTGTGGT
GCCAAGAGGTGGATCTGGAAGAAAACTTCATCTTGTAAATTATTTGCATC
ATCTGAAACAAGAATTTATAATGACTTGTAGTATAGATTTAATTTCAAAC
CAAAAGGTTGACGATGATTTACTGATCATGTACTTAGCTCTTCAAAGCCC
AAACAAATCTGTTGTCATTTCTAATGATAACTTTACAGAACACTTAGCAC
TTATATCGGAATCAAAACGATCAGACATGATTACTTGGTTGAGATCAACA
GTGAAGGACTTTTCTGGAAATGGAACAATCCAATTATCAAACTACATACC
AAGTGTTATGGTTAATAACGGTAGATTATGTATTATTAGTGATAATAATG
TTTTGTATATAAAAAAGTCATAGGTGATTTTAATAGTTTTATAAGATTCT
AGTGATAAACCATTTTACACAACAATATTTTAGAACACAGAGTAGACCTG
TTTCATCTTTTcatcttgaaattgaaaaattgaataaagcATCCATGAGA
ATAGATGCAACAAACTGTCTTTTCTGGTTTTATTCTcgatatttcaaatt
taaattcta Run BLAST on NCBI protein sequence of TCONS_00017413-protein >TCONS_00017413-protein ID=TCONS_00017413-protein|Name=TCONS_00017413-protein|organism=Clytia hemisphaerica|type=polypeptide|length=448bp
MLRFNHIRCLKQSVQISGWYAAVRASTQCVTDAEKMIQKVLETNSNHPEW
KNITKDRKLLPMIANNLSSMGRFEELDQLFDKVGIDSCSLGMQTTLLRSY
IERQNWESAFGLLKNLEGKLKHTRIHHELVQNLCIYSDVQKVFHHFGMLV
DKESCFKFKRSQNTAQETFQAILQFLMENEHAISEKMLTSLIQFMHIADI
SVDLIALENLHKLFLSLEYECKLSKIEELELLDEIKESHSKDEKSFVTEL
KVGIEKKLIENGGHSFLENLKVMKKEAYIIDVANVLYYQSEKQSGPNILR
LKNIVSSLVSLNQHKKRSKSVIFVVPRGGSGRKLHLVNYLHHLKQEFIMT
CSIDLISNQKVDDDLLIMYLALQSPNKSVVISNDNFTEHLALISESKRSD
MITWLRSTVKDFSGNGTIQLSNYIPSVMVNNGRLCIISDNNVLYIKKS Run BLAST on NCBI transcript from alignment at sc0000267:120129..123261+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017413 ID=TCONS_00017413|Name=TCONS_00017413|organism=Clytia hemisphaerica|type=transcript|length=3133bp|location=Sequence derived from alignment at sc0000267:120129..123261+ (Clytia hemisphaerica)
GGGCAAAATAAACTGGAAACCTAGCACCCTTGCAAATTTGCAAACGACAA
AATTTCTAACTAATTTGGTTCTTTAGAAATGCCACTCTTTTAAAAAGGTG
TGATGCTCATTAAAGGGAAGGGCTCCTTTGAAGATCTGTgatcaaagttc
ttccgtctcagacggatttccgtctcacagaatttttttcaaagttttcg
gTCTCAATTATTtagcaagaaaaagtgatttTATTCTCTAGAGTAATTCC
ATCAGAAAGAAATCTCGTATTAAAACTATGTTTATGGCTGTTTATGGCTG
ATTTTATATTTTGAGTTGttttaattaacaaattttTGTGCCTTTCTACT
CAATCTTGTAAGTCATAATACATTTTTAAGACAATTAGCATTGAATTCTA
AAAGTTATAGTCTTGGATGGCTTCTGGCTGAATTTCCATTAATATTTATA
CCTTTCATTATAGCTATGGGTGATGAGGcgaaattaaagaaattaaaaca
aGCTTACTTAGACGACTTACATTCACATGCTGGGAAATTGTGtctatctc
ataaaaagaaGTTTGCAAAATGCATGTCTGAGTCTGTATTCAACTTTTGT
GGTGTTCACTTGAGAGAATTTACAGTCTGTGCGAGGAAGACTTTTGAAGA
GctcaaagaagaaaataaagaaattcttGAGTTCAAAATAGATCCCTCTG
AAGAAGTGAAAAAGGTACAGTTTTCTACACTTTATAATATTTTGAACTTT
AAGTGACTAATCTTTTAATTCATTAATTAATGCATGGCTCCGActgggtt
ctaggtccccccgccaaatttaggtctcccctgagaacaaggtcccccct
gagaacaaggtccccccagcctgataaaattttaggtcccagtatagggg
aaaaattttatggcattcacaaagctctatCTACATGGGTgtgcactttt
agagaatgcaagctcggtcgttacttgacctcgggcaatatgtcttcatt
ttttcattttaaggatcagatcaccctttgcatgaaaacataaaggttta
gagaaattaaaaaccaacattaaagaaaaatatttaggaagtgtTATTTA
GCCCCCAGAGTTACATAAACTAATGCAGGTCCCCCCAAGATAGAGCTCCC
CCCGTCTGTCGGGAAAAACAAGCAGCTCCCGCCTCTTATATGGCAAATTT
TAGGTGTAGGTCCCCCCGCTCAGGCAGGGGGGGGGGCGAGCCATGTAATG
TAGATAAGAAGTCTCCTTTTAGATGACAATGATGGGGGCAGACAATTGAT
AAGTCTTTCTGGGTTTTCTAGGACTAAGTTTGCCCATCATCAAAGCAAAA
TGCTACGATTTAATCACATCAGATGTTTGAAGCAATCCGTACAAATCAGT
GGTTGGTATGCTGCTGTGAGAGCCTCAACTCAGTGTGTAACAGATGCTGA
AAAGATGATCCAAAAGGTCTTGGAAACCAATTCCAATCatccagaatgga
aaaatattaCCAAAGATCGAAAACTTTTACCAATGATTGCAAACAATCTT
TCGAGTATGGGAAGGTTTGAAGAATTAGACCAGCTGTTTGATAAAGTTGG
TATTGATAGTTGCTCCCTTGGTATGCAAACCACATTGCTGAGGTCTTACA
TAGAGAGGCAGAATTGGGAAAGTGCCTTTGGCTTATTAAAAGTAAGTATA
ATAAGATATTTTGTAAAgcaaatttaaaactttccaaATAAAAAGGTGAA
CCCTACTTCAGGTAGAGACTTTTATATATAAACATTTGATTCTGCCCTGT
GCTTTCCTTTATCGACCTGTCATTACTGCGGTATTGGTATTTGCGGCGtt
agcttttttaggcttatgcaaataaaggatagaaatagaaatagaaaggt
AAAAAACTTATCTATGATACTAACGTTCAACTTTTCTTATAGAATTTAGA
GGGTAAATTGAAGCATACAAGGATTCATCATGAATTAGTTCAAAACCTTT
GCATATACAGTGATGTTCAAAAGGTGTTCCATCATTTTGGAATGCTTGTT
GATAAAGAATCTTGTTTCAAATTTAAGCGAAGTCAAAACACTGCCCAAGA
GACTTTTCAAGCAATTTTACAATTCCTTATGGAAAATGAACATGCCATCT
CTGAAAAAATGTTGACAAGTTTGATCCAGTTTATGCATATTGCTGATATT
TCTGTTGACTTGATAGCTCTGGAGAATTTACACAAGTTATTTTTATCTTT
GGAATATGAATGTAAGCTATCCAAAATTGAGGAGCTGGAATTGTTAGACG
AGATAAAAGAAAGTCATAGCAAAGATGAGAAATCTTTTGTAACAGAATTG
AAAGTAGgtatagaaaaaaaacttattgaaaatgGAGGGCATTCATTTCT
CGAGAATTTAAAAGTAATGAAAAAAGAAGCTTACATTATCGATGTTGCTA
ATGTTTTATACTACCAATCTGAAAAACAAAGCGGACCTAATATTTTGAGA
TTAAAGAACATTGTCAGTAGTCTTGTATCTCTAAATCAACACAAAAAACG
CTCAAAAAGTGTGATATTTGTGGTGCCAAGAGGTGGATCTGGAAGAAAAC
TTCATCTTGTAAATTATTTGCATCATCTGAAACAAGAATTTATAATGACT
TGTAGTATAGATTTAATTTCAAACCAAAAGGTTGACGATGATTTACTGAT
CATGTACTTAGCTCTTCAAAGCCCAAACAAATCTGTTGTCATTTCTAATG
ATAACTTTACAGAACACTTAGCACTTATATCGGAATCAAAACGATCAGAC
ATGATTACTTGGTTGAGATCAACAGTGAAGGACTTTTCTGGAAATGGAAC
AATCCAATTATCAAACTACATACCAAGTGTTATGGTTAATAACGGTAGAT
TATGTATTATTAGTGATAATAATGTTTTGTATATAAAAAAGTCATAGGTG
ATTTTAATAGTTTTATAAGATTCTAGTGATAAACCATTTTACACAACAAT
ATTTTAGAACACAGAGTAGACCTGTTTCATCTTTTcatcttgaaattgaa
aaattgaataaagcATCCATGAGAATAGATGCAACAAACTGTCTTTTCTG
GTTTTATTCTcgatatttcaaatttaaattcta Coding sequence (CDS) from alignment at sc0000267:120129..123261+ >TCONS_00017413 ID=TCONS_00017413|Name=TCONS_00017413|organism=Clytia hemisphaerica|type=CDS|length=2694bp|location=Sequence derived from alignment at sc0000267:120129..123261+ (Clytia hemisphaerica)
ATGCTACGATTTAATCACATCAGATGTTTGAAGCAATCCGTACAAATCAG
TGGTTGGTATGCTGCTGTGAGAGCCTCAACTCAGTGTGTAACAGATGCTG
AAAAGATGATCCAAAAGGTCTTGGAAACCAATTCCAATCatccagaatgg
aaaaatattaCCAAAGATCGAAAACTTTTACCAATGATTGCAAACAATCT
TTCGAGTATGGGAAGGTTTGAAGAATTAGACCAGCTGTTTGATAAAGTTG
GTATTGATAGTTGCTCCCTTGGTATGCAAACCACATTGCTGAGGTCTTAC
ATAGAGAGGCAGAATTGGGAAAGTGCCTTTGGCTTATTAAAAAATTTAGA
GGGTAAATTGAAGCATACAAGGATTCATCATGAATTAGTTCAAAACCTTT
GCATATACAGTGATGTTCAAAAGGTGTTCCATCATTTTGGAATGCTTGTT
GATAAAGAATCTTGTTTCAAATTTAAGCGAAGTCAAAACACTGCCCAAGA
GACTTTTCAAGCAATTTTACAATTCCTTATGGAAAATGAACATGCCATCT
CTGAAAAAATGTTGACAAGTTTGATCCAGTTTATGCATATTGCTGATATT
TCTGTTGACTTGATAGCTCTGGAGAATTTACACAAGTTATTTTTATCTTT
GGAATATGAATGTAAGCTATCCAAAATTGAGGAGCTGGAATTGTTAGACG
AGATAAAAGAAAGTCATAGCAAAGATGAGAAATCTTTTGTAACAGAATTG
AAAGTAGgtatagaaaaaaaacttattgaaaatgGAGGGCATTCATTTCT
CGAGAATTTAAAAGTAATGAAAAAAGAAGCTTACATTATCGATGTTGCTA
ATGTTTTATACTACCAATCTGAAAAACAAAGCGGACCTAATATTTTGAGA
TTAAAGAACATTGTCAGTAGTCTTGTATCTCTAAATCAACACAAAAAACG
CTCAAAAAGTGTGATATTTGTGGTGCCAAGAGGTGGATCTGGAAGAAAAC
TTCATCTTGTAAATTATTTGCATCATCTGAAACAAGAATTTATAATGACT
TGTAGTATAGATTTAATTTCAAACCAAAAGGTTGACGATGATTTACTGAT
CATGTACTTAGCTCTTCAAAGCCCAAACAAATCTGTTGTCATTTCTAATG
ATAACTTTACAGAACACTTAGCACTTATATCGGAATCAAAACGATCAGAC
ATGATTACTTGGTTGAGATCAACAGTGAAGGACTTTTCTGGAAATGGAAC
AATCCAATTATCAAACTACATACCAAGTGTTATGGTTAATAACGGTAGAT
TATGTATTATTAGTGATAATAATGTTTTGTATATAAAAAAGTCATAGATG
CTACGATTTAATCACATCAGATGTTTGAAGCAATCCGTACAAATCAGTGG
TTGGTATGCTGCTGTGAGAGCCTCAACTCAGTGTGTAACAGATGCTGAAA
AGATGATCCAAAAGGTCTTGGAAACCAATTCCAATCatccagaatggaaa
aatattaCCAAAGATCGAAAACTTTTACCAATGATTGCAAACAATCTTTC
GAGTATGGGAAGGTTTGAAGAATTAGACCAGCTGTTTGATAAAGTTGGTA
TTGATAGTTGCTCCCTTGGTATGCAAACCACATTGCTGAGGTCTTACATA
GAGAGGCAGAATTGGGAAAGTGCCTTTGGCTTATTAAAAAATTTAGAGGG
TAAATTGAAGCATACAAGGATTCATCATGAATTAGTTCAAAACCTTTGCA
TATACAGTGATGTTCAAAAGGTGTTCCATCATTTTGGAATGCTTGTTGAT
AAAGAATCTTGTTTCAAATTTAAGCGAAGTCAAAACACTGCCCAAGAGAC
TTTTCAAGCAATTTTACAATTCCTTATGGAAAATGAACATGCCATCTCTG
AAAAAATGTTGACAAGTTTGATCCAGTTTATGCATATTGCTGATATTTCT
GTTGACTTGATAGCTCTGGAGAATTTACACAAGTTATTTTTATCTTTGGA
ATATGAATGTAAGCTATCCAAAATTGAGGAGCTGGAATTGTTAGACGAGA
TAAAAGAAAGTCATAGCAAAGATGAGAAATCTTTTGTAACAGAATTGAAA
GTAGgtatagaaaaaaaacttattgaaaatgGAGGGCATTCATTTCTCGA
GAATTTAAAAGTAATGAAAAAAGAAGCTTACATTATCGATGTTGCTAATG
TTTTATACTACCAATCTGAAAAACAAAGCGGACCTAATATTTTGAGATTA
AAGAACATTGTCAGTAGTCTTGTATCTCTAAATCAACACAAAAAACGCTC
AAAAAGTGTGATATTTGTGGTGCCAAGAGGTGGATCTGGAAGAAAACTTC
ATCTTGTAAATTATTTGCATCATCTGAAACAAGAATTTATAATGACTTGT
AGTATAGATTTAATTTCAAACCAAAAGGTTGACGATGATTTACTGATCAT
GTACTTAGCTCTTCAAAGCCCAAACAAATCTGTTGTCATTTCTAATGATA
ACTTTACAGAACACTTAGCACTTATATCGGAATCAAAACGATCAGACATG
ATTACTTGGTTGAGATCAACAGTGAAGGACTTTTCTGGAAATGGAACAAT
CCAATTATCAAACTACATACCAAGTGTTATGGTTAATAACGGTAGATTAT
GTATTATTAGTGATAATAATGTTTTGTATATAAAAAAGTCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017413-exon-sc0000267-1491911889:120129..120225 | TCONS_00017413-exon-sc0000267-1491911889:120129..120225 | Clytia hemisphaerica | exon |
| TCONS_00017413-exon-sc0000267-1510915933:120129..120225 | TCONS_00017413-exon-sc0000267-1510915933:120129..120225 | Clytia hemisphaerica | exon |
| TCONS_00017413-exon-sc0000267-1575043694:120129..120225 | TCONS_00017413-exon-sc0000267-1575043694:120129..120225 | Clytia hemisphaerica | exon |
| TCONS_00017413-exon-sc0000267-1491911889:120592..120842 | TCONS_00017413-exon-sc0000267-1491911889:120592..120842 | Clytia hemisphaerica | exon |
| TCONS_00017413-exon-sc0000267-1510915933:120592..120842 | TCONS_00017413-exon-sc0000267-1510915933:120592..120842 | Clytia hemisphaerica | exon |
| TCONS_00017413-exon-sc0000267-1575043694:120592..120842 | TCONS_00017413-exon-sc0000267-1575043694:120592..120842 | Clytia hemisphaerica | exon |
| TCONS_00017413-exon-sc0000267-1491911889:121450..121819 | TCONS_00017413-exon-sc0000267-1491911889:121450..121819 | Clytia hemisphaerica | exon |
| TCONS_00017413-exon-sc0000267-1510915933:121450..121819 | TCONS_00017413-exon-sc0000267-1510915933:121450..121819 | Clytia hemisphaerica | exon |
| TCONS_00017413-exon-sc0000267-1575043694:121450..121819 | TCONS_00017413-exon-sc0000267-1575043694:121450..121819 | Clytia hemisphaerica | exon |
| TCONS_00017413-exon-sc0000267-1491911889:122071..123261 | TCONS_00017413-exon-sc0000267-1491911889:122071..123261 | Clytia hemisphaerica | exon |
| TCONS_00017413-exon-sc0000267-1510915933:122071..123261 | TCONS_00017413-exon-sc0000267-1510915933:122071..123261 | Clytia hemisphaerica | exon |
| TCONS_00017413-exon-sc0000267-1575043694:122071..123261 | TCONS_00017413-exon-sc0000267-1575043694:122071..123261 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000267 | supercontig | sc0000267:120129..123261 + |
Blast
The following BLAST results are available for this feature:
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