TCONS_00017421 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017421
Unique NameTCONS_00017421
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length867

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017421 ID=TCONS_00017421|Name=TCONS_00017421|organism=Clytia hemisphaerica|type=transcript|length=867bp
taccTCTTAGCAGcttatttcttttcatttttcagattaaaaaaactttt
ttcaaaaccaaaataccattgcaaagaaataaaaattaaacagaTTAAAT
TTACTTGTTCATTTTAAAAAGAGACCAAATATTTTGATTCTGTTTCCTGA
TGCATTCAAATGACCATGAGTTTTCAAAACCTGCTTCTCCGTCTGTGCCA
TACATGAATGATTCTGAACTTCAAATCCAAACAAGATTCGATGGAACACC
CAACAAAACTATCTATGTTACCAGTCTGAATCATGCTCGCACTCCTTTTG
ATCTACCAGAAGAATCATGTGACAGTTTCATTGACATTGAAGAAGCCAGT
GTCAGCTTACCTGGAAAACCAATGAAAGATGGCTCTGAAACCTATCATCA
CTCATTTATGGCAGCGCTTTCATATGATCAAGATTTGCGCAATCAAAAGA
GGGATCAATATGAACCTTATCACAGAATGCAGAAATCAACAAATGTATCT
CCTCACCAAGAACTGAATGAGTTGATGAAAACTGTGGATacgaaaaaatc
aatttttgaatttgaagcaCCGCTTAGCCCTAAAGAACCATCAATTGATC
TTTTAACATTAGATCCTCCGCGGATAGAAATCATAGAAGAGCCTGAaact
gtaaatttattttatttttgtcctttgtattttcttaattttctaaGTTT
AGTAAATCTTTCTTCTAAGAAACTTAGATATTTCACTCAAGCATTGGCCC
TTATAGCTACACTAAAACTAGTAAAGCAATAAAACTACCttcagacaaaa
atattttgtgggaagaaatttttgcagaatttaatttcctggttttttgc
caaatctgcgaaattaa
Run BLAST on NCBI

transcript from alignment at sc0000267:171632..172498+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017421 ID=TCONS_00017421|Name=TCONS_00017421|organism=Clytia hemisphaerica|type=transcript|length=867bp|location=Sequence derived from alignment at sc0000267:171632..172498+ (Clytia hemisphaerica)
taccTCTTAGCAGcttatttcttttcatttttcagattaaaaaaactttt
ttcaaaaccaaaataccattgcaaagaaataaaaattaaacagaTTAAAT
TTACTTGTTCATTTTAAAAAGAGACCAAATATTTTGATTCTGTTTCCTGA
TGCATTCAAATGACCATGAGTTTTCAAAACCTGCTTCTCCGTCTGTGCCA
TACATGAATGATTCTGAACTTCAAATCCAAACAAGATTCGATGGAACACC
CAACAAAACTATCTATGTTACCAGTCTGAATCATGCTCGCACTCCTTTTG
ATCTACCAGAAGAATCATGTGACAGTTTCATTGACATTGAAGAAGCCAGT
GTCAGCTTACCTGGAAAACCAATGAAAGATGGCTCTGAAACCTATCATCA
CTCATTTATGGCAGCGCTTTCATATGATCAAGATTTGCGCAATCAAAAGA
GGGATCAATATGAACCTTATCACAGAATGCAGAAATCAACAAATGTATCT
CCTCACCAAGAACTGAATGAGTTGATGAAAACTGTGGATacgaaaaaatc
aatttttgaatttgaagcaCCGCTTAGCCCTAAAGAACCATCAATTGATC
TTTTAACATTAGATCCTCCGCGGATAGAAATCATAGAAGAGCCTGAaact
gtaaatttattttatttttgtcctttgtattttcttaattttctaaGTTT
AGTAAATCTTTCTTCTAAGAAACTTAGATATTTCACTCAAGCATTGGCCC
TTATAGCTACACTAAAACTAGTAAAGCAATAAAACTACCttcagacaaaa
atattttgtgggaagaaatttttgcagaatttaatttcctggttttttgc
caaatctgcgaaattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009755XLOC_009755Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017421-exon-sc0000267-1491911889:171632..172498TCONS_00017421-exon-sc0000267-1491911889:171632..172498Clytia hemisphaericaexon
TCONS_00017421-exon-sc0000267-1510915933:171632..172498TCONS_00017421-exon-sc0000267-1510915933:171632..172498Clytia hemisphaericaexon
TCONS_00017421-exon-sc0000267-1575043694:171632..172498TCONS_00017421-exon-sc0000267-1575043694:171632..172498Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000267supercontigsc0000267:171632..172498 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.14204	6.82543	7.85385	7.05705	30.7548	22.8706	24.3826	24.2544	6.98515	11.6411	9.74897	7.11729	7.39383	5.96858	5.12084	7.57011	13.8424	9.78507	6.77468	11.0324	13.4608	13.2445	9.29924	12.1871	13.6199	9.25991	4.25567	4.79891	7.22224	7.56679
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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