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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017442 ID=TCONS_00017442|Name=TCONS_00017442|organism=Clytia hemisphaerica|type=transcript|length=3870bpRun BLAST on NCBI protein sequence of TCONS_00017442-protein >TCONS_00017442-protein ID=TCONS_00017442-protein|Name=TCONS_00017442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1074bp MSNDSVILNQIRKDWYNQGSNLINVHIYVKEVDDLDIVFDETSVTLSFYTRun BLAST on NCBI transcript from alignment at sc0000267:184469..197831- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017442 ID=TCONS_00017442|Name=TCONS_00017442|organism=Clytia hemisphaerica|type=transcript|length=13363bp|location=Sequence derived from alignment at sc0000267:184469..197831- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000267:184469..197831- >TCONS_00017442 ID=TCONS_00017442|Name=TCONS_00017442|organism=Clytia hemisphaerica|type=CDS|length=35475bp|location=Sequence derived from alignment at sc0000267:184469..197831- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017442 vs. Swiss-Prot (Human)
Match: UBP19 (Ubiquitin carboxyl-terminal hydrolase 19 OS=Homo sapiens GN=USP19 PE=1 SV=2) HSP 1 Score: 247.669 bits (631), Expect = 1.161e-66 Identity = 144/400 (36.00%), Postives = 210/400 (52.50%), Query Frame = 2
Query: 635 GLTGLENYANNCYMNVVIQLLANIQELRDYLKSDQYIKDINTNNPLCSGGKVVKAFADVVKILWSYRRNAFKPSELKSIMGKRCTLFLGWQQHDAQEFCSSLLDNLHEDLNQPRG----------GEPNEGSENEKPETAWNSHTKRNNSFIVKMFHGQLMSKVTCDSCRKVSYSYDPCAQISLPIPSSKQTLQVVFFTRDITSPPMLTKLQVSTSNAKLWHLVXMLIK-LQVSTSNAKLWHLVNMLQTTVKVPHHLIALFSGV-TDVCFNLQSSLTPFAKQKFIVAAELSAKDENDVISVPVFQHLSHARNVMRCDNCLKTQDEIQGKLKRCTRCMVASYCSRDCQTKHWSFHSKVCTKELKSIVGLSFFVTVKKD-TTYERLEEVLRERAKFTTEAIQ 1795
G TGL N N C+MN VIQ L+N +ELRD+ + +IN NNPL +GG++ FA +++ LW +AF+PS+LK+I+ + + F G+ QHDAQEF + LLD LHEDLN+ + G P+E E AW H RN+SFIV +F GQ SK+ C C KVS ++DP + +P+P ++ L V +F R+ S P+ + VS N+ ++ L + + V N +L ++ V +P H + S T +CF L SS AK++ +V L + V SVP + +C C + Q KLKRCTRC YC++ CQ HW H +C E +G F V+V TY RL ++L A+++ Q
Sbjct: 495 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLLRALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTETVDSDGRPDEVVAEE----AWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPVPLPQKQKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVKPENLRLAEVIKNRFHRVFLPSHSLDTVSPSDTLLCFELLSSE--LAKERVVV---LEVQQRPQVPSVP----------ISKCAACQRKQQSEDEKLKRCTRCYRVGYCNQLCQKTHWPDHKGLCRPE---NIGYPFLVSVPASRLTYARLAQLLEGYARYSVSVFQ 872 HSP 2 Score: 102.449 bits (254), Expect = 9.801e-22 Identity = 61/162 (37.65%), Postives = 87/162 (53.70%), Query Frame = 2
Query: 2135 DQCSLYDSLKLFMEPERLDERESWKCPKCATPQSAKKEMAISSPPXXXXXXXKRFTYGDH--GQKIHRAVSYPLNGLDLTPYVAKETRNKMDHSLVYDLCGVITHRGNMRMGHYTCMVRLINQLDQE--EVGWRYFDDDSVMKIKSEKVVSQDAYVLMYRVR 2608
DQC L LF PE L E+W CP+C + A K++ + P +L++ LKRF++ KI+ V +P+ LDL+ + + ++ YDL VI H G M GHYT RL N + +VGWR FDD +V + +VV++ AYVL YR R
Sbjct: 1061 DQC-----LNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSFRSFIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPS---YDLYAVINHYGGMIGGHYTACARLPNDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRRR 1214 The following BLAST results are available for this feature:
BLAST of TCONS_00017442 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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