TCONS_00017448 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017448
Unique NameTCONS_00017448
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1289

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017448 ID=TCONS_00017448|Name=TCONS_00017448|organism=Clytia hemisphaerica|type=transcript|length=1289bp
ATTGTCAATCATACCATAGCTGTCTACAACACTATTCAAACTCAGTTACT
TCCAACACCAGCAAAAAGTCACTATACATTCAACTTGCGTGATTTGTCAA
AAGTCTTTCAGGGTATATTAATGGCATCTACTGACAAAATTGATAGTAAA
GCTGACATGCTCAGACTATGGTATCATGAGAATTGCCGTATATTCCAAGA
CCGTCTGGTCAACGATGAAGATCGAACATGGTTCAAGAAACTATTAGAAG
AAAAATTGGTAGATTCCTTTCAAATGAGATTTGATGAGGTTGTTACACGA
ACACCATTGTTTTATGGTGATTTCATGATTCCCAGTGCTGAAGTCAAATT
GTATAATGAAATTACTAATGAAGAAAAGATGAAAACTATACTGGAAGAAT
ATCTAGAGGATTATAACCAAGTTAATATATCACAGATGAAGCTTGTCCTG
TTCTCAGATGCTATCCAACATATTTGTCGCATCGGTCGTATCATTCGTCA
GCCTCTTGGAAATGCTCTGTTGTTAGGTGTTGGTGGATCGGGTCGTCAAA
GTTTGACACGACTTGCAAGTCACATAGCTGAGTATGATTTATTTCAAATC
GAGTTATCAAAGAGTTATGGTATTACTGAATGGAAAGATGACTTGAAGAA
GTTGTTAATGAAAGCTGGTGTTGAGAATAAACCCATGGTCTTCTTATTCG
TCGACACTCAGATCAAGAGTGAAATCTTCTTGGAAGATTTGAACAATGTT
CTCAACGCTGGTGACGTTCCCAACATATATGCTCCCGATGAGTTAGATAC
TATTTACACTACCATGAAACCTATCGTACAAGATGAAGGGTTACAACCAA
CCAAAGTCAACCTCTTCATGACATATACTAAACGTGTTCGCTCCAATATT
CATATGGTCATTTGTATGAGTCCAATTGGCGAAGTATTCCGTGCACGGTT
GAGACAATTTCCATCATTGGTGACATGCTGTACAATCGATTGGTTTAGTG
AATGGCCTGAACAAGCTCTCATTTCTGTTGCCAATACCTTCATCTCTGAG
ATGCCTGAAGTCGATCCTGATAATACCAATGTTGAAGGATTGGTCAAACT
GTTTGGTACATTCCATCAATCGGTCGCTAAAAAATCGCTCCAATATTTAG
CAGAATTATCCCGATACAATTACGTCACACCGACCAGCTATCTTGAATTG
TTGGGTATTTTCAAGAAAGTTTTGGGcatcaaaaaaaatgaaatcatgTC
TGCCAAAAACAGAACTAAAACTGGTCTTGATAAGGTTTG
Run BLAST on NCBI

transcript from alignment at sc0000267:276064..280856-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017448 ID=TCONS_00017448|Name=TCONS_00017448|organism=Clytia hemisphaerica|type=transcript|length=4793bp|location=Sequence derived from alignment at sc0000267:276064..280856- (Clytia hemisphaerica)
ATTGTCAATCATACCATAGCTGTCTACAACACTATTCAAACTCAGGTATT
TTTTGAGCTCTTACAATCGAATAAAAAATATCTTCTGTAGGTAAGCCAAG
CCGTTCCAAAGATTTCCTAACCATAAGCAACTCTTATTTTATTTCGAAAT
CAAGGGTTTTTAAGATTTGATACAAGTGCAATATAAAACGATAAAGATGG
TCACATAGGTTTGGCTTTTAGCAAAGCTAAAGTGAACTTTAAAACGCCAT
GGCCCAGAGGCTTTGTTACTAAATATTTTACACAGAATTAATATTGAACC
TCAAAAATCTTGTTTATTTTAGTTACTTCCAACACCAGCAAAAAGTCACT
ATACATTCAACTTGCGTGATTTGTCAAAAGTCTTTCAGGGTATATTAATG
GCATCTACTGACAAAATTGATAGTAAAGCTGACATGCTCAGACTATGGTA
AGTATTTAAAGATAATGTCACAATATAAAACGGACCTGCGCTCTATGCCA
ATCAGATTGCGACATTATACCCTTGCATCTATGCAGCTAATCAAATAGGA
CTTGGTTTTTATTTCAACGCTTTAACTCGGTTAATTTCGATCGTTTTACT
TCTGTTTTTAACATTGAAGTGCAAAAGGATCTTGTATTGGACTTAGGTTC
GAGTTTAACTCTTTAGCTTCAATATTAAAATAACTGTTTTTCTGTTGCCA
TAACAGGTATCATGAGAATTGCCGTATATTCCAAGACCGTCTGGTCAACG
ATGAAGATCGAACATGGTTCAAGAAACTATTAGAAGAAAAATTGGTAGAT
TCCTTTCAAATGAGATTTGATGAGGTTGTTACACGAACACCATTGTTTTA
TGGTGATTTCATGATTCCCAGTGCTGAAGTCAAATTGTATAATGAAATTA
CTAATGAAGAAAAGGTATAGCAAAAGTGTTTCATAACCCTTTGTTATAGA
TTTTTGTCCTATGCACTTTTAAGAAACTTATAAAAAAAAAATAATAGAAT
TATCAGATTAGAATACCATCCATACCATACAGCCATCTCAAAAAAAGTTT
AAAAGCTTGGGAAAAAGTAGATTGGAGTTTACTCCTGACTGACTTTCGGG
TATTGTATTGACCTTTTTTCATCTACAATAAATGCTAGTATTCTGGCCCC
TTGCCCCTAGAACACTTATAGATTGTTTCAGGTATGTAAAAAAGCATATA
TTGTATGTCTGCTTTCATTTGATATTTAATTTATTAACTCTTGGTAAGTG
CCCAGGAAATGATGAGAGCAAGTGTACTGTAAGGGTGTAAGGAGTAAGAA
AAAAATTCTTTGGGAAGTTCTTTGGGTAATGCACCGTAAAGATCAATGTT
CTTCCCAAACTTGCTCCAATTTGGGTAAATTTTCCCTGCGCTGTAAGGGT
TTCTATTTTGTGACCTTAATTTTCGTTGGCAAATACGGTTATTTTCATAT
CGAGTCCCCCAGGAGTAAATTTTATTCAAATGTGCTTTGCATGGACTGTT
GTAAAGCGTGATCTTTTTCAATTATAGATGAAAACTATACTGGAAGAATA
TCTAGAGGATTATAACCAAGTTAATATATCACAGATGAAGCTTGTCCTGT
TCTCAGATGCTATCCAACATATTTGTCGCATCGGTCGTATCATTCGTCAG
CCTCTTGGAAATGCTCTGTTGTTAGGTGTTGGTGGATCGGGTCGTCAAAG
TTTGACACGACTTGCAAGTCACATGTCAGTATTATTTCCTTTATTTTTCT
TTTCTAGGTTTTCGGCGTCAAGAATTTCCTGTTTGTTTTTTCGTATTCTG
GTCCGTAGAATACACAACTGCAAGAAAATTTCGGACAGTCAACAAGAAAA
TTTAGAAAATTCAGACAGTGTGCTATAAGATGATATATGTTTACAAGTGT
CTCTCTGACTGTCATACTTGACTTCTCCCAACTCNCACAACTGCAAGAAA
ATTTCGGACAGTCAACAAGAAAATTTAGAAAATTCTGACAGTGTGCTATA
AGATGATATGTTTACAAGTGTCTCTCCGACTGGACTATAAAGTTGTTCTA
AGTAAACCAGTGTTCAAAGTTCTATCGTCTAGTACGAAATTCCGTCTAAG
TGAAGTTTAGAAAGAGGCATTTCCGCCTCTGAAATGACTAAAATTTTACA
AGATTTAAAGACTGTTGGCTCGATAAAGTCAATTATCTATCTCAGATATA
AAAAAAACTACTGCTAAGTATTTGGCCCGCTACTCAGAACAGATTTTATT
CAATATTTCGAACAGATTTTATTCAATATTTTCTGTGAAAACAAAAATAA
TGTCACGTTTTTTTGTACCTATTCCTCACTAATTTTGTTCTGTCTTTTTC
TCTGAACAGAGCTGAGTATGATTTATTTCAAATCGAGTTATCAAAGAGTT
ATGGTATTACTGAATGGAAAGATGACTTGAAGAAGTTGTTAATGAAAGCT
GGTGTTGAGAATAAACCCATGGTCTTCTTATTCGTCGACACTCAGGTATT
GTTACTTTGAACTGTTTCGTATGCTTTTCCTATACCACAAAAGTAAACTT
TGCCTCGATGCAATTTACAGTGGGGACAATAGGGGCGGTAAGTTTTGATG
GAATACCGAGGTTATGTATGTGTGTTTTCTGCGACGGAGACGGTAAGGCT
CTAATTTGACTAGATCCTGAGCAGCTGAGGACGATGGTAAATCAGCACTT
TCACCGTCCTCGATTTTGCGGGTCAGAACTGCGGGTTATTTCAAATCGCT
TCAGTCACTTCACCGTTCTCAAAAGTGCAAATACATGCTATGGAATACGA
GTTNCAGTCACTTCACCGTTCTCAAAAGTGCAAATACATAAGCTCGCTAT
GGAATACGAGTTAGACAACGGTTTTGTACGTGTTGAAAAGAACAGCAGTG
AATATTATGAAATCGAAAACATTCAATGCAGTTTGTATTGACTTTAAGAT
TTCGCTGATTCGACGAAATCTTCCAAACTTTATGTACTTTGAACGAATTC
TCGATCCCCATAGAGAAGAAATTTGTCTATAAATAGGCCTGGTTTCTACG
GAAGTTTCAAAATTCATTGCCGTACTACGCTACGTTATACGTGAGTACAG
AGTATGAGGAAGCCGGCTTTGATGGAATACTTCATAATTTGCAGATCGTT
GTAATCCGAACAAACTTCAACAGGCTTTGAGAATATGAATTAACCAACAT
CAATTGAAATTGTATTTCCATCGGAAAATGCTGTTGCCCCATTTTCTACC
TTTGTTTTGGATACTTAAGCTAACGTTTTTGTATATATGATGGTAACTCT
GCATGAATATGTTTCCCTCTCTTTAGATCAAGAGTGAAATCTTCTTGGAA
GATTTGAACAATGTTCTCAACGCTGGTGACGTTCCCAACATATATGCTCC
CGATGAGTTAGATACTATTTACACTACCATGAAACCTATCGTACAAGATG
AAGGGTTACAACCAACCAAAGTCAACCTCTTCATGACATATACTAAACGT
GTTCGCTCCAATATTCATATGGTCATTTGTATGAGGTAGGTGTTATTTGT
TCGTGTCAACTCTGTAATTCGACCTTCATTATTCGAATCCTTCTGTAAAT
CAAACTAAAACATTGGTCTCTTCAAATTTAAAGCCATGTAAATTTTGCTC
CTTTATTCGAATCTTTTTTTCTAATTCGAAGGAAATATTTGGTCTCTTGA
AGATCAAATAAGAGAGATTCAACTGCAATTATACCTAGTTGCTTCACAAC
CTCCATCTAACATTTTATGGACATCCGATAGAAACAGGAAACTCTCGTAA
ACGACGCTCTACCATTCGATACGATCCATTTTTCGATAAAAATACAATTT
CCCTTGAAAATCAAATTAGAGAGCGCCAACTACACTTTTTTTTCACGCGT
TAGTAAAATATTCAAACGGTTGGGGGTAATCATTCCAGGCCTCAATATAC
AAAGTTTTAACATTAGCTCCTTCTCCCCTTTTTCAGTCCAATTGGCGAAG
TATTCCGTGCACGGTTGAGACAATTTCCATCATTGGTGACATGCTGTACA
ATCGATTGGTTTAGTGAATGGCCTGAACAAGCTCTCATTTCTGTTGCCAA
TACCTTCATCTCTGAGATGCCTGAAGTCGATCCTGATAATACCAATGTTG
AAGGATTGGTAAGTTGTGAATGCCATTTTCTCATATACAGTAGATACTCA
ATAACTGAAACAAACAGAGGTACAAATTTGTTCAAAATAAGAAATATGAA
GTAAGGTTTATAAGGCATTGTTAACTGAAAGGACCATAAAACTTGTTCAA
GTTATAGAGGTTCGAGTTAAAGAGACTCCACTGTATATAGCCAATAACGA
GTTCCTCGATGTATTAAAATGCTTAATCGTAAAAATGGTTCCTTTCTAGA
CCTACCTCTATTGGTTTCTGTAGAGAAGAGACTTTTCATTCAACTCCAAT
TTATATTCAAGAGTACGCTAATATTGTAGCAGCCATTAATGACAAAAACG
ATATCTCTTTAAAATTCACTCTCTGTCGCATTTGGAAGTAATACACCAAT
CTACGAGGGATAAATTTAATTTGATTTGAATTTATTTTCGCTCCAGGTCA
AACTGTTTGGTACATTCCATCAATCGGTCGCTAAAAAATCGCTCCAATAT
TTAGCAGAATTATCCCGATACAATTACGTCACACCGACCAGCTATCTTGA
ATTGTTGGGTATTTTCAAGAAAGTTTTGGGCATCAAAAAAAATGAAATCA
TGTCTGCCAAAAACAGAACTAAAACTGGTCTTGATAAGGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009765XLOC_009765Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017448-exon-sc0000267-1575043694:280812..280856TCONS_00017448-exon-sc0000267-1575043694:280812..280856Clytia hemisphaericaexon
TCONS_00017448-exon-sc0000267-1575043694:280410..280534TCONS_00017448-exon-sc0000267-1575043694:280410..280534Clytia hemisphaericaexon
TCONS_00017448-exon-sc0000267-1575043694:279943..280150TCONS_00017448-exon-sc0000267-1575043694:279943..280150Clytia hemisphaericaexon
TCONS_00017448-exon-sc0000267-1575043694:279133..279329TCONS_00017448-exon-sc0000267-1575043694:279133..279329Clytia hemisphaericaexon
TCONS_00017448-exon-sc0000267-1575043694:278362..278497TCONS_00017448-exon-sc0000267-1575043694:278362..278497Clytia hemisphaericaexon
TCONS_00017448-exon-sc0000267-1575043694:277322..277530TCONS_00017448-exon-sc0000267-1575043694:277322..277530Clytia hemisphaericaexon
TCONS_00017448-exon-sc0000267-1575043694:276699..276870TCONS_00017448-exon-sc0000267-1575043694:276699..276870Clytia hemisphaericaexon
TCONS_00017448-exon-sc0000267-1575043694:276064..276260TCONS_00017448-exon-sc0000267-1575043694:276064..276260Clytia hemisphaericaexon
TCONS_00017448-exon-sc0000267-1510915933:280812..280856TCONS_00017448-exon-sc0000267-1510915933:280812..280856Clytia hemisphaericaexon
TCONS_00017448-exon-sc0000267-1510915933:280410..280534TCONS_00017448-exon-sc0000267-1510915933:280410..280534Clytia hemisphaericaexon
TCONS_00017448-exon-sc0000267-1510915933:279943..280150TCONS_00017448-exon-sc0000267-1510915933:279943..280150Clytia hemisphaericaexon
TCONS_00017448-exon-sc0000267-1510915933:279133..279329TCONS_00017448-exon-sc0000267-1510915933:279133..279329Clytia hemisphaericaexon
TCONS_00017448-exon-sc0000267-1510915933:278362..278497TCONS_00017448-exon-sc0000267-1510915933:278362..278497Clytia hemisphaericaexon
TCONS_00017448-exon-sc0000267-1510915933:277322..277530TCONS_00017448-exon-sc0000267-1510915933:277322..277530Clytia hemisphaericaexon
TCONS_00017448-exon-sc0000267-1510915933:276699..276870TCONS_00017448-exon-sc0000267-1510915933:276699..276870Clytia hemisphaericaexon
TCONS_00017448-exon-sc0000267-1510915933:276064..276260TCONS_00017448-exon-sc0000267-1510915933:276064..276260Clytia hemisphaericaexon
TCONS_00017448-exon-sc0000267-1491911889:280812..280856TCONS_00017448-exon-sc0000267-1491911889:280812..280856Clytia hemisphaericaexon
TCONS_00017448-exon-sc0000267-1491911889:280410..280534TCONS_00017448-exon-sc0000267-1491911889:280410..280534Clytia hemisphaericaexon
TCONS_00017448-exon-sc0000267-1491911889:279943..280150TCONS_00017448-exon-sc0000267-1491911889:279943..280150Clytia hemisphaericaexon
TCONS_00017448-exon-sc0000267-1491911889:279133..279329TCONS_00017448-exon-sc0000267-1491911889:279133..279329Clytia hemisphaericaexon
TCONS_00017448-exon-sc0000267-1491911889:278362..278497TCONS_00017448-exon-sc0000267-1491911889:278362..278497Clytia hemisphaericaexon
TCONS_00017448-exon-sc0000267-1491911889:277322..277530TCONS_00017448-exon-sc0000267-1491911889:277322..277530Clytia hemisphaericaexon
TCONS_00017448-exon-sc0000267-1491911889:276699..276870TCONS_00017448-exon-sc0000267-1491911889:276699..276870Clytia hemisphaericaexon
TCONS_00017448-exon-sc0000267-1491911889:276064..276260TCONS_00017448-exon-sc0000267-1491911889:276064..276260Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000267supercontigsc0000267:276064..280856 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.03086	1.51928	1.38269	0.81445	8.55547	2.78182	5.06329	6.54555	3.18043	4.62345	3.24538	5.8834	0.0830756	1.44929	1.26845	0.765596	1.69747	1.71415	0.0168113	0.759573	1.04854	1.47806	1.50762	0.768395	1.71841	4.82336	0.778285	3.23846	1.54245	0.887834
Blast
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BLAST of TCONS_00017448 vs. Swiss-Prot (Human)
Match: DYH1 (Dynein heavy chain 1, axonemal OS=Homo sapiens GN=DNAH1 PE=2 SV=4)

HSP 1 Score: 603.979 bits (1556), Expect = 0.000e+0
Identity = 274/429 (63.87%), Postives = 354/429 (82.52%), Query Frame = 1 
Query:    1 IVNHTIAVYNTIQTQLLPTPAKSHYTFNLRDLSKVFQGILMASTDKIDSKADMLRLWYHENCRIFQDRLVNDEDRTWFKKLLEEKLVDSFQMRFDEVVTRTPLFYGDFMIPSAEVKLYNEITNEEKMKTILEEYLEDYNQVNISQMKLVLFSDAIQHICRIGRIIRQPLGNALLLGVGGSGRQSLTRLASHIAEYDLFQIELSKSYGITEWKDDLKKLLMKAGVENKPMVFLFVDTQIKSEIFLEDLNNVLNAGDVPNIYAPDELDTIYTTMKPIVQDEGLQPTKVNLFMTYTKRVRSNIHMVICMSPIGEVFRARLRQFPSLVTCCTIDWFSEWPEQALISVANTFISEMPEVDPDNTNVEGLVKLFGTFHQSVAKKSLQYLAELSRYNYVTPTSYLELLGIFKKVLGIKKNEIMSAKNRTKTGLDKV 1287
            +V  TI VY TI +QLLPTPAKSHYTFNLRDLSKVFQG+LMA   K++ +  +LRLWYHENCR+F+DRLVN+EDR+WF +LL+ + ++ +++ F++V    P+ YGDFM P ++VK Y  IT+E KM  ++EEY+EDYNQ+N +++KLVLF DA+ HICRI R +RQ LGNALLLGVGGSGR SLTRLASH+AEY+ FQIELSK+YG++EW+DD+KK+L+KAG++N P+ FLF DTQIK+E FLED+NNVLN+GD+PN+Y  DE D I +TM+P +Q++GLQPTK NL   YT RVRSNIHMV+CMSPIGEVFRARLRQFPSLV CCTIDWF+EWP +AL SVA  F++E+PE++     ++GL+++    HQSV+KK ++YLAEL+R+NYVTP SYLELL IF  ++G KK E+ +AKNR K+GLDK+
Sbjct: 2412 LVEATIMVYATITSQLLPTPAKSHYTFNLRDLSKVFQGMLMADPAKVEDQVQLLRLWYHENCRVFRDRLVNEEDRSWFDQLLK-RCMEQWEVTFNKVCPFQPILYGDFMSPGSDVKSYELITSESKMMQVIEEYIEDYNQINTAKLKLVLFMDAMSHICRISRTLRQALGNALLLGVGGSGRSSLTRLASHMAEYECFQIELSKNYGMSEWRDDVKKVLLKAGLQNLPITFLFSDTQIKNESFLEDINNVLNSGDIPNLYTADEQDQIVSTMRPYIQEQGLQPTKANLMAAYTGRVRSNIHMVLCMSPIGEVFRARLRQFPSLVNCCTIDWFNEWPAEALKSVATVFLNEIPELESSQEEIQGLIQVCVYIHQSVSKKCIEYLAELTRHNYVTPKSYLELLHIFSILIGQKKLELKTAKNRMKSGLDKL 2839
The following BLAST results are available for this feature:
BLAST of TCONS_00017448 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DYH10.000e+063.87Dynein heavy chain 1, axonemal OS=Homo sapiens GN=... [more]
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