TCONS_00017474 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017474
Unique NameTCONS_00017474
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017474 ID=TCONS_00017474|Name=TCONS_00017474|organism=Clytia hemisphaerica|type=transcript|length=327bp
NAAAGGATgttgaaattcttcaaaaagaacTAGAAAAAGTCTATGACTGG
ACTGAAGAAAACAACATGAAACTAAATGACACAAAGTTTGAACTTCTACG
CTATCGTCCAGATGAAGAACCAAACTCACTACAAATCCCCTTTAGGAGAA
AATATCGAAAGGAAGAAATTTGTGAAGGACCTGGGAGTACTAATGTCAGA
TGATGCTGTCTTTACACATCAAAGAAATTCAGTCATTGAGAAAGCAAAAA
ACTTGATTTCCTGGATTCTGCGGACTTTCTCTTCGCGTTTACCCCAACTA
ATGATTACTCTTTACAAATCATTGGTT
Run BLAST on NCBI

transcript from alignment at sc0000267:203855..204181

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017474 ID=TCONS_00017474|Name=TCONS_00017474|organism=Clytia hemisphaerica|type=transcript|length=327bp|location=Sequence derived from alignment at sc0000267:203855..204181 (Clytia hemisphaerica)
AACCAATGATTTGTAAAGAGTAATCATTAGTTGGGGTAAACGCGAAGAGA
AAGTCCGCAGAATCCAGGAAATCAAGTTTTTTGCTTTCTCAATGACTGAA
TTTCTTTGATGTGTAAAGACAGCATCATCTGACATTAGTACTCCCAGGTC
CTTCACAAATTTCTTCCTTTCGATATTTTCTCCTAAAGGGGATTTGTAGT
GAGTTTGGTTCTTCATCTGGACGATAGCGTAGAAGTTCAAACTTTGTGTC
ATTTAGTTTCATGTTGTTTTCTTCAGTCCAGTCATAGACTTTTTCTAgtt
ctttttgaagaatttcaacATCCTTTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009774XLOC_009774Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017474-exon-sc0000267-1491911889:203855..204181TCONS_00017474-exon-sc0000267-1491911889:203855..204181Clytia hemisphaericaexon
TCONS_00017474-exon-sc0000267-1510915933:203855..204181TCONS_00017474-exon-sc0000267-1510915933:203855..204181Clytia hemisphaericaexon
TCONS_00017474-exon-sc0000267-1575043694:203855..204181TCONS_00017474-exon-sc0000267-1575043694:203855..204181Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000267supercontigsc0000267:203855..204181 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.75215	0.479075	0.87318	4.61972	0.892329	1.86609	1.47546	1.15993	3.90316	4.02986	1.59695	0.265171	0.796495	1.1964	1.18876	0.647901	0	0.740778	0	0	1.33819	0	0	0.774996	0	0	0	1.21242	0	1.81068
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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