TCONS_00017479 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017479
Unique NameTCONS_00017479
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length405

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017479 ID=TCONS_00017479|Name=TCONS_00017479|organism=Clytia hemisphaerica|type=transcript|length=405bp
CTGTTATACATACTGGTAAAGGTGCGTGTCAGGCTTATAAAGAAGTTCGG
AGATTCTTCAAAGCCATGAATATACCAGTAGTCACTACTTTACATGGTGT
TGGTAttcttgatgaaaatgatcgaCTTTCGTTAAGAATGGGAGGTGTCT
ACGGTACAGTCGTTGCAAATTACGCTATTCAAAATGCTGATTGTATCATT
TCTATAGGAGCAAGATTCGATGATCGGTCTACTGGAGCTTTAAGCGAATA
TGCACCACATTGTAAACACTTTGTGCATTTGAATATTGATGAAAGCGAAA
TTAACAAAGTGGTCAACGCTAAGAATGTTATTATCGGTGATGTCTGCTTG
ACTTTACCACAGTTGATGGACTCAATGAAACAATTAGATTCGCAATTTGA
CCCAG
Run BLAST on NCBI

protein sequence of TCONS_00017479-protein

>TCONS_00017479-protein ID=TCONS_00017479-protein|Name=TCONS_00017479-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
VIHTGKGACQAYKEVRRFFKAMNIPVVTTLHGVGILDENDRLSLRMGGVY
GTVVANYAIQNADCIISIGARFDDRSTGALSEYAPHCKHFVHLNIDESEI
NKVVNAKNVIIGDVCLTLPQLMDSMKQLDSQFDP
Run BLAST on NCBI

transcript from alignment at sc0000267:268236..268640

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017479 ID=TCONS_00017479|Name=TCONS_00017479|organism=Clytia hemisphaerica|type=transcript|length=405bp|location=Sequence derived from alignment at sc0000267:268236..268640 (Clytia hemisphaerica)
CTGGGTCAAATTGCGAATCTAATTGTTTCATTGAGTCCATCAACTGTGGT
AAAGTCAAGCAGACATCACCGATAATAACATTCTTAGCGTTGACCACTTT
GTTAATTTCGCTTTCATCAATATTCAAATGCACAAAGTGTTTACAATGTG
GTGCATATTCGCTTAAAGCTCCAGTAGACCGATCATCGAATCTTGCTCCT
ATAGAAATGATACAATCAGCATTTTGAATAGCGTAATTTGCAACGACTGT
ACCGTAGACACCTCCCATTCTTAACGAAAGtcgatcattttcatcaagaa
TACCAACACCATGTAAAGTAGTGACTACTGGTATATTCATGGCTTTGAAG
AATCTCCGAACTTCTTTATAAGCCTGACACGCACCTTTACCAGTATGTAT
AACAG

Coding sequence (CDS) from alignment at sc0000267:268236..268640

>TCONS_00017479 ID=TCONS_00017479|Name=TCONS_00017479|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at sc0000267:268236..268640 (Clytia hemisphaerica)
TGGGTCAAATTGCGAATCTAATTGTTTCATTGAGTCCATCAACTGTGGTA
AAGTCAAGCAGACATCACCGATAATAACATTCTTAGCGTTGACCACTTTG
TTAATTTCGCTTTCATCAATATTCAAATGCACAAAGTGTTTACAATGTGG
TGCATATTCGCTTAAAGCTCCAGTAGACCGATCATCGAATCTTGCTCCTA
TAGAAATGATACAATCAGCATTTTGAATAGCGTAATTTGCAACGACTGTA
CCGTAGACACCTCCCATTCTTAACGAAAGtcgatcattttcatcaagaaT
ACCAACACCATGTAAAGTAGTGACTACTGGTATATTCATGGCTTTGAAGA
ATCTCCGAACTTCTTTATAAGCCTGACACGCACCTTTACCAGTATGTATA
AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009779XLOC_009779Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017479-proteinTCONS_00017479-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017479-exon-sc0000267-1491911889:268236..268640TCONS_00017479-exon-sc0000267-1491911889:268236..268640Clytia hemisphaericaexon
TCONS_00017479-exon-sc0000267-1510915933:268236..268640TCONS_00017479-exon-sc0000267-1510915933:268236..268640Clytia hemisphaericaexon
TCONS_00017479-exon-sc0000267-1575043694:268236..268640TCONS_00017479-exon-sc0000267-1575043694:268236..268640Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000267supercontigsc0000267:268236..268640 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.724036	0.529537	0.614843	2.00509	11.2286	5.59386	4.42159	2.17865	1.67786	2.26724	0.550159	0.241102	0	0.375058	0.102783	0	0.407648	0	0	0	1.57509	1.53654	0	0	0	0.173445	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029035DHS-like_NAD/FAD-binding_dom
IPR012000Thiamin_PyroP_enz_cen_dom
Vocabulary: Molecular Function
TermDefinition
GO:0030976thiamine pyrophosphate binding
GO:0000287magnesium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0030976 thiamine pyrophosphate binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017479 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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