TCONS_00017488 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00017488
Unique Name	TCONS_00017488
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1270

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000269:46350..49054+
coding sequence from alignment at sc0000269:46350..49054+

transcript sequence

>TCONS_00017488 ID=TCONS_00017488|Name=TCONS_00017488|organism=Clytia hemisphaerica|type=transcript|length=1270bp
ATAGTATCCTCTTTCAACGAGGTTTATATCCTATGGAATCGTTCGATCGC
AAGATTGCTTACGATGTGCCCGTTTTCGTTTCTACCAACACTGATTTGAA
TGATTATCTACACAAGTTCATCGAACAAATGAAAGATTGGTTAGTAAAGA
AGACGATTCAAAGGATTGTATTGGTGATCACTTCAGTTGCCAAGAAAGTG
GACGTTGAACGGTGGACATTCAACATCGAATGTGATAAAACTGCTAATGA
AACCACGGAACAGACGACAAAACCAGTAAAAGAGGTTCGTAAAGAAATGC
AAGCAGTCATCAAACAAATTGTGTCAACAGTCACCTTTCTACCTTATCTC
GATGAAAGATGCACGTTCGACTTGTTAGTGTACACAGATGCGGACAGCGA
AGTACCAGCTCTTTGGGAAGACGGAGAGGAACATTACATTTCGAACGCCG
AAGAAGTCAAACTAAAATCCTTCTCAACTTTGCTTCATAAAGTTGACATG
GCTGTATGCTACAAAGTCTCATAATAATGAACAATTTTTTgttattctca
tttttgattagaAGCATCAACTTATCAAAATTATGTTTGAGAGTTCTAAA
CGACTGTTCAAAAGTGCCTGTGTAGTTCTTTGATACAATggcaaatcatt
ttcaaaaacttttaacaacGACTTTGAATTCTCTCATATGATACACTCTA
AGAATATTATGTGGCTTTCATTACATATAGCAAAGAATAGACTGAGACGA
GCAATTTAAAAAATGAGCATAatggaggagtgtactttccattcatgttt
caatgaataggatctcctccacagatcacattttacaaactactcgtctc
aggcgatttttccgtctcagtataaatggaacttttccaaaaaaattgat
gaaacttTTAACTAACAGGTTGTTGTTGCAAGTAATCGCTCAAACGGTAA
GACTATAATTAGATTGtcaacgATTGTCAAGCTTTTAGCCTAGGGAGATT
TTCTAGCATCGGTTATTTTTAAACTCTGAGGTTATGGACTTACATGGCAT
TATTGTATGATGTCATTTTAAAAGATATCCTTTTCTGACTTGtcaaacta
ttttttatttgtcTTCAAAGTTAATGTTTATTTGAAGAAGcaagtttttt
atgaatttattttattgtaCATATTTAAAAGTAGGTAGTAcgttacaaaa
aaaaacatttacatcTTTGAAATCAAGACTGACGAGCATATACTTGTTTT
GCTTTAAAATAACAATCGAC

Run BLAST on NCBI

protein sequence of TCONS_00017488-protein

>TCONS_00017488-protein ID=TCONS_00017488-protein|Name=TCONS_00017488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
SILFQRGLYPMESFDRKIAYDVPVFVSTNTDLNDYLHKFIEQMKDWLVKK
TIQRIVLVITSVAKKVDVERWTFNIECDKTANETTEQTTKPVKEVRKEMQ
AVIKQIVSTVTFLPYLDERCTFDLLVYTDADSEVPALWEDGEEHYISNAE
EVKLKSFSTLLHKVDMAVCYKVS

Run BLAST on NCBI

transcript from alignment at sc0000269:46350..49054+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00017488 ID=TCONS_00017488|Name=TCONS_00017488|organism=Clytia hemisphaerica|type=transcript|length=2705bp|location=Sequence derived from alignment at sc0000269:46350..49054+ (Clytia hemisphaerica)
ATAGTATCCTCTTTCAACGAGGTTTATATCCTATGGAATCGTTCGATCGC
AAGATTGCTTACGATGTGCCCGTTTTCGTTTCTACCAACACTGATTTGAA
TGATTATCTACACAAGTTCATCGAACAAATGAAAGGTTTGTTGGtacttt
cttattttgatttcaattctttgacAGTTTTATTCTTAGAAAAATGAACT
TCATGGTCTTACCTGGAGATCTACTTTGTCTGGTAGCGGGATGGGAGGGA
CGGGAATAGAGATAATATGGTTTTGCTGCTTCATTaccaggaaaaaaatt
ttaaaaaataggCGAGCTAAAAACGAGTGcgttttttttagctgaaaaaa
aattgtgaggTAAAAAAGGGAAGAGCGCTAAAATTTACGATCTGAAGAGC
TTTagaattttaagaaatatatatcccattttttttttcattaccaGATT
GGTTAGTAAAGAAGACGATTCAAAGGATTGTATTGGTGATCACTTCAGTT
GCCAAGAAAGTGGACGTTGAACGGTGGACATTCAACATCGAATGTGATAA
AACTGCTAATGAAACCACGTAAGAATGATTTCGGACGTACAGGGGAACAA
TTATGATAAAGGGgctttttaaaaacctaaatgTTATCGTAAATTAATTC
ACCAAGAGTGCTCAATGATCGTGTATCAATAAAACGAGGGCGTAATCGAA
AAGATTCGAGAAAGAACAAATGACCCAATTAagaaaagttagttttttta
gtttttatgacgtttTTATAGTACccttcattttcagtcatttgtttggt
cgttttctgtcggctaatgcgatctaaaattatggtaattttaagacatg
ccataacttacccgagtcaTCTTAGGCGTAAACGTTCAAAAACTTCATAA
TTATCActtataaaattaattttcctgCCTTACCTCGCTGTCTTCTTAAT
GCTTGGAGTTTATAATTTCCCTGAAGCTTTTACCCTGAGTTTCCATCTCT
TTGAGTTCCATGCTATACTGTCAGAACCAACgttcttttatcttttttta
ataaggccctactttcttttcttctctAGGGAACAGACGACAAAACCAGT
AAAAGAGGTTCGTAAAGAAATGCAAGCAGTCATCAAACAAATTGTGTCAA
CAGTCACCTTTCTACCTTATCTCGATGAAAGATGTATGTATTAACGTTTC
GGACCTACCTGGatgtcctttaaattaacccctctcgtttgttcgttcgt
tcgtatTAACTTCTGTTGTCACAAACTTATGCCAAATTTGTTGTTTGGAT
TTGTACAACTCTTCGATAACGTTGCAAATGACTCAACTAAAAACAGACTA
ATAATAAACATGTTTAGCCCAGCTTTCACCCAGACGGGATAAGGGCTTAT
ATTCAACTTTCGCCGGTAAAAGCTCAAAACTACCTCTGCACTTTTAGGAC
TTACAAATCCAAACTCAAATATTTACAATACCTGAATCTCCACCTTCTTC
TTATCAGGCACGTTCGACTTGTTAGTGTACACAGATGCGGACAGCGAAGT
ACCAGCTCTTTGGGAAGACGGAGAGGAACATTACATTTCGAACGCCGAAG
AAGTCAAACTAAAATCCTTCTCAACTTTGCTTCATAAAGTTGACATGGCT
GTATGCTACAAAGTCTCATAATAATGAACAATTTTTTgttattctcattt
ttgattagaAGCATCAACTTATCAAAATTATGTTTGAGAGTTCTAAACGA
CTGTTCAAAAGTGCCTGTGTAGTTCTTTGATACAATggcaaatcattttc
aaaaacttttaacaacGACTTTGAATTCTCTCATATGATACACTCTAAGA
ATATTATGTGGCTTTCATTACATATAGCAAAGAATAGACTGAGACGAGCA
ATTTAAAAAATGAGCATAatggaggagtgtactttccattcatgtttcaa
tgaataggatctcctccacagatcacattttacaaactactcgtctcagg
cgatttttccgtctcagtataaatggaacttttccaaaaaaattgatgaa
acttTTAACTAACAGGTTGTTGTTGCAAGTAATCGCTCAAACGGTAAGAC
TATAATTAGATTGtcaacattgagtttcaagccagaagggctagaggcga
gactcctatatgggaaatgaaaccacttatttcccatccagaacgcccgc
gcgtagtttttacacaaacgccggcaactaaaatctatcgctagaattta
aaaaaatgtagtcctccaaaacaaaggaatcgctagatACAATCCCCCGT
Cgagattacggcgcgttctatgcgtgttttggatgggaaataagtggctt
caatttctcttgccttaGAAGGGTTCAAGTTtcgcccttcgggcttgaaa
ctcaacgATTGTCAAGCTTTTAGCCTAGGGAGATTTTCTAGCATCGGTTA
TTTTTAAACTCTGAGGTTATGGACTTACATGGCATTATTGTATGATGTCA
TTTTAAAAGATATCCTTTTCTGACTTGtcaaactattttttatttgtcTT
CAAAGTTAATGTTTATTTGAAGAAGcaagttttttatgaatttattttat
tgtaCATATTTAAAAGTAGGTAGTAcgttacaaaaaaaaacatttacatc
TTTGAAATCAAGACTGACGAGCATATACTTGTTTTGCTTTAAAATAACAA
TCGAC

Coding sequence (CDS) from alignment at sc0000269:46350..49054+

>TCONS_00017488 ID=TCONS_00017488|Name=TCONS_00017488|organism=Clytia hemisphaerica|type=CDS|length=2088bp|location=Sequence derived from alignment at sc0000269:46350..49054+ (Clytia hemisphaerica)
AGTATCCTCTTTCAACGAGGTTTATATCCTATGGAATCGTTCGATCGCAA
GATTGCTTACGATGTGCCCGTTTTCGTTTCTACCAACACTGATTTGAATG
ATTATCTACACAAGTTCATCGAACAAATGAAAGATTGGTTAGTAAAGAAG
ACGATTCAAAGGATTGTATTGGTGATCACTTCAGTTGCCAAGAAAGTGGA
CGTTGAACGGTGGACATTCAACATCGAATGTGATAAAACTGCTAATGAAA
CCACGGAACAGACGACAAAACCAGTAAAAGAGGTTCGTAAAGAAATGCAA
GCAGTCATCAAACAAATTGTGTCAACAGTCACCTTTCTACCTTATCTCGA
TGAAAGATGCACGTTCGACTTGTTAGTGTACACAGATGCGGACAGCGAAG
TACCAGCTCTTTGGGAAGACGGAGAGGAACATTACATTTCGAACGCCGAA
GAAGTCAAACTAAAATCCTTCTCAACTTTGCTTCATAAAGTTGACATGGC
TGTATGCTACAAAGTCTCATAAAGTATCCTCTTTCAACGAGGTTTATATC
CTATGGAATCGTTCGATCGCAAGATTGCTTACGATGTGCCCGTTTTCGTT
TCTACCAACACTGATTTGAATGATTATCTACACAAGTTCATCGAACAAAT
GAAAGATTGGTTAGTAAAGAAGACGATTCAAAGGATTGTATTGGTGATCA
CTTCAGTTGCCAAGAAAGTGGACGTTGAACGGTGGACATTCAACATCGAA
TGTGATAAAACTGCTAATGAAACCACGGAACAGACGACAAAACCAGTAAA
AGAGGTTCGTAAAGAAATGCAAGCAGTCATCAAACAAATTGTGTCAACAG
TCACCTTTCTACCTTATCTCGATGAAAGATGCACGTTCGACTTGTTAGTG
TACACAGATGCGGACAGCGAAGTACCAGCTCTTTGGGAAGACGGAGAGGA
ACATTACATTTCGAACGCCGAAGAAGTCAAACTAAAATCCTTCTCAACTT
TGCTTCATAAAGTTGACATGGCTGTATGCTACAAAGTCTCATAAAGTATC
CTCTTTCAACGAGGTTTATATCCTATGGAATCGTTCGATCGCAAGATTGC
TTACGATGTGCCCGTTTTCGTTTCTACCAACACTGATTTGAATGATTATC
TACACAAGTTCATCGAACAAATGAAAGATTGGTTAGTAAAGAAGACGATT
CAAAGGATTGTATTGGTGATCACTTCAGTTGCCAAGAAAGTGGACGTTGA
ACGGTGGACATTCAACATCGAATGTGATAAAACTGCTAATGAAACCACGG
AACAGACGACAAAACCAGTAAAAGAGGTTCGTAAAGAAATGCAAGCAGTC
ATCAAACAAATTGTGTCAACAGTCACCTTTCTACCTTATCTCGATGAAAG
ATGCACGTTCGACTTGTTAGTGTACACAGATGCGGACAGCGAAGTACCAG
CTCTTTGGGAAGACGGAGAGGAACATTACATTTCGAACGCCGAAGAAGTC
AAACTAAAATCCTTCTCAACTTTGCTTCATAAAGTTGACATGGCTGTATG
CTACAAAGTCTCATAAAGTATCCTCTTTCAACGAGGTTTATATCCTATGG
AATCGTTCGATCGCAAGATTGCTTACGATGTGCCCGTTTTCGTTTCTACC
AACACTGATTTGAATGATTATCTACACAAGTTCATCGAACAAATGAAAGA
TTGGTTAGTAAAGAAGACGATTCAAAGGATTGTATTGGTGATCACTTCAG
TTGCCAAGAAAGTGGACGTTGAACGGTGGACATTCAACATCGAATGTGAT
AAAACTGCTAATGAAACCACGGAACAGACGACAAAACCAGTAAAAGAGGT
TCGTAAAGAAATGCAAGCAGTCATCAAACAAATTGTGTCAACAGTCACCT
TTCTACCTTATCTCGATGAAAGATGCACGTTCGACTTGTTAGTGTACACA
GATGCGGACAGCGAAGTACCAGCTCTTTGGGAAGACGGAGAGGAACATTA
CATTTCGAACGCCGAAGAAGTCAAACTAAAATCCTTCTCAACTTTGCTTC
ATAAAGTTGACATGGCTGTATGCTACAAAGTCTCATAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009787	XLOC_009787	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00017488-protein	TCONS_00017488-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000269	supercontig	sc0000269:46350..49054 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.7306	22.6171	62.724	62.5017	3.12275	3.34784	6.01637	5.21542	8.32724	6.84446	5.53612	4.61944	4.10711	4.27901	7.30934	11.8714	10.7054	9.4167	2.26204	2.79782	6.57378	5.83556	13.5097	12.7054	11.1561	9.45782	4.16903	1.7634	7.26088	7.27479

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR003511	HORMA_dom

Blast

[Close]

BLAST of TCONS_00017488 vs. Swiss-Prot (Human)
Match: MD2L1 (Mitotic spindle assembly checkpoint protein MAD2A OS=Homo sapiens GN=MAD2L1 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.631e-52
Identity = 81/172 (47.09%), Postives = 124/172 (72.09%), Query Frame = 3

Query:    3 SILFQRGLYPMESFDRKIAYDVPVFVSTNTDLNDYLHKFIEQMKDWLVKKTIQRIVLVITSVAKKVDVERWTFNIECDKTANETTEQTTKPVKEVRKEMQAVIKQIVSTVTFLPYLDERCTFDLLVYTDADSEVPALWEDGEEHYISNAEEVKLKSFSTLLHKVDMAVCYKV 518
            SIL+QRG+YP E+F R   Y + + V+T+ +L  YL+  +EQ+KDWL K ++Q++V+VI+++     +ERW F+IECDKTA + +    K  K ++ E+++VI+QI +TVTFLP L+  C+FDLL+YTD D  VP  WE+    +I+N+EEV+L+SF+T +HKV+  V YK+
Sbjct:   30 SILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKI 201

The following BLAST results are available for this feature:

BLAST of TCONS_00017488 vs. Swiss-Prot (Human)

BLAST of TCONS_00017488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MD2L1	1.631e-52	47.09	Mitotic spindle assembly checkpoint protein MAD2A ...	[more]

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TCONS_00017488 (transcript) - C. hemisphaerica