TCONS_00017492 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017492
Unique NameTCONS_00017492
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length519

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017492 ID=TCONS_00017492|Name=TCONS_00017492|organism=Clytia hemisphaerica|type=transcript|length=519bp
TGAAGAGATGAGAAATATGACGTAAACACGATGCAAGTAGTAATTATATT
CCCAagtgattacgaaaagttattCTTTCAACAATGATATTCCAAATAGA
CTTGCCGAATAATGGTACAGCTATCAAGTATCCCGGATCGAGAAGTCAAC
GCATCGTCATATTGCACATACAACATTAATTAGGAAAAGGGACCACTGGG
TGAACCGATAATCGAGATCGTTCTCAGGTAGACCATGACTCTTAATTGTC
AACTTGACTAAAACACGACAGAAAAATCGTTTGTTCGCCATCGAAGCGTG
AAGAACTATGCACCCGATTGTATCCACGGAGATTATATATacaaattctt
ttattacacccctatatcagtgacccggtcagctCCACTCAATGATGAAC
TACCCGGTGAAAGAAATTGCATAGAACCCAAATCAAAGATCTTATTTATG
GTCTTACCGTCTTACCccggtcaaattttttttaagaattcttgaatatt
agttgaaagtcaatttttc
Run BLAST on NCBI

transcript from alignment at sc0000269:123590..125361+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017492 ID=TCONS_00017492|Name=TCONS_00017492|organism=Clytia hemisphaerica|type=transcript|length=1772bp|location=Sequence derived from alignment at sc0000269:123590..125361+ (Clytia hemisphaerica)
TGAAGAGATGAGAAATATGACGTAAACACGATGCAAGTAGTAATTATATT
CCCAagtgattacgaaaagttattCTTTCAACAATGGTAAGTTTTTTATC
ACGTCTATTAGGATGACGTCTTTGCAGATTCCTGTGAGAGTTACTTTAAA
GAAGGTCATTGACATGCGAATGAGTTCAAGGATATTATCTAAGGCCCTCT
TTATATCACGATCAATAGGGGATAAAAGCTTGCTATTTTATGCTTTCTCA
GAAGCATTAATGTATATTAAGGCAACGTAAAAAGCTCGGTAAAATAGTGg
gaagaaatattattttatcagaCACGTATTATCCCTGTATCACGCGAGTG
GTATTTTAGCTCTCCCGCCTCTCGCACCTCCCTGTGTcacaacaaaggaa
atataccaTATTACATCCCTGTCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNATGTCCTTGTCggaatacacattacatctCTG
TCTTGTGCGAGTGGGATTTTTTACTTTCTCGTCACTTTTGTCTTAATGAC
GCGACTTAGAATACCGCTATTATTATCGATTAATTTTCGCATGTACTTTT
TTTTTAGAGAATTGAGAATTATAAAGAACTAAGTtttgcgaaaagggcca
aaactcATGAAACTTACGAATTAACGTTAGAGGTCGatgccattttcaat
tactccacgcgaagttagaggtcgatgccattttcaattactCCACGCGA
AGTTTAATCCACCTAAAGCGGCAGATACGTAAGGTATTTGAGTACATAAT
TTCACCGGTTTGGGGACTGTAAAGATCTTCTAACGCCACACGATGGAcat
taaaaaatgttagaaaGGTTTTGAAACGCTGTTGTGTGTCAACTGTTTCA
TATTTGATCGGTATTAAGATGTGGTTTTGCCAGTTGAcgattaaaataat
ttgaatatattgcTTTTCTTTCTAGATATTCCAAATAGACTTGCCGAATA
ATGGTACAGCTATCAAGTATCCCGGATCGAGAAGTCAACGCATCGTCATA
TTGCACATACAACATTAATTAGGAAAAGGTATTTCGTTCTCGAATGTTTC
ACCTGGTTTTATCGTCATCCTTTATACCATTTTAATATGTATCTTTTCTT
ctagtaaaataattttgtcatacaCCCCTATTTAAGGTCGTTGACTTCTA
TCTAATAAGCTCAATAATCTAATGAAGCCCTGAATATACCGCAAAATTAG
TttcatgacaattttttttaattcattcgtTGCCTTTTATAGGGACCACT
GGGTGAACCGATAATCGAGATCGTTCTCAGGTAGACCATGACTCTTAATT
GTCAACTTGACTAAAACACGACAGAAAAATCGTTTGTTCGCCATCGAAGC
GTGAAGAACTATGCACCCGATTGTATCCACGGAGATTATATATacaaatt
cttttattacacccctatatcagtgacccggtcagctCCACTCAATGATG
AACTACCCGGTGAAAGAAATTGCATAGAACCCAAATCAAAGATCTTATTT
ATGGTCTTACCGTCTTACCccggtcaaattttttttaagaattcttgaat
attagttgaaagtcaatttttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009790XLOC_009790Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017492-exon-sc0000269-1491911889:123590..123675TCONS_00017492-exon-sc0000269-1491911889:123590..123675Clytia hemisphaericaexon
TCONS_00017492-exon-sc0000269-1510915933:123590..123675TCONS_00017492-exon-sc0000269-1510915933:123590..123675Clytia hemisphaericaexon
TCONS_00017492-exon-sc0000269-1575043694:123590..123675TCONS_00017492-exon-sc0000269-1575043694:123590..123675Clytia hemisphaericaexon
TCONS_00017492-exon-sc0000269-1491911889:124715..124817TCONS_00017492-exon-sc0000269-1491911889:124715..124817Clytia hemisphaericaexon
TCONS_00017492-exon-sc0000269-1510915933:124715..124817TCONS_00017492-exon-sc0000269-1510915933:124715..124817Clytia hemisphaericaexon
TCONS_00017492-exon-sc0000269-1575043694:124715..124817TCONS_00017492-exon-sc0000269-1575043694:124715..124817Clytia hemisphaericaexon
TCONS_00017492-exon-sc0000269-1491911889:125032..125361TCONS_00017492-exon-sc0000269-1491911889:125032..125361Clytia hemisphaericaexon
TCONS_00017492-exon-sc0000269-1510915933:125032..125361TCONS_00017492-exon-sc0000269-1510915933:125032..125361Clytia hemisphaericaexon
TCONS_00017492-exon-sc0000269-1575043694:125032..125361TCONS_00017492-exon-sc0000269-1575043694:125032..125361Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:123590..125361 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.19361	1.61526	1.89203	1.66594	8.17128	5.23326	6.30299	8.14527	6.75816	7.04702	10.2175	7.49988	7.12826	9.08204	5.7738	7.06309	9.37255	9.80089	4.51312	7.01984	9.50313	8.92777	6.6775	6.27636	4.69679	3.93916	6.66875	6.01232	5.81887	5.12439
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017492 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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