TCONS_00017494 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017494
Unique NameTCONS_00017494
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length362

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017494 ID=TCONS_00017494|Name=TCONS_00017494|organism=Clytia hemisphaerica|type=transcript|length=362bp
aatgtcttttcattcatcttaaatattcccacgagtatacccaaaattaa
tcatcttattcccaaagcaactaaacagctgtttgcttccgatgataaat
cagaatagaacaaaaggcattgactctccatctatctttattaccttcat
gattCAATTCACCCTAATGGTcgatgttttcattttagttcgAAGACCAC
GAGAAGCAGTCCATGACTCTGCTCATCTGTTGTATCTGTCAAAGAAATCA
AGAGAGCAAGCACAAGAACTCAAAACTGATATTGTTGCATTTGATAATGT
AACATTCATCAAAAAACTGATTGGTTCAGTGAATGGATATCAACTCACTG
GATGTTCCGANA
Run BLAST on NCBI

transcript from alignment at sc0000269:141948..142828+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017494 ID=TCONS_00017494|Name=TCONS_00017494|organism=Clytia hemisphaerica|type=transcript|length=881bp|location=Sequence derived from alignment at sc0000269:141948..142828+ (Clytia hemisphaerica)
aatgtcttttcattcatcttaaatattcccacgagtatacccaaaattaa
tcatcttattcccaaagcaactaaacagctgtttgcttccgatgataaat
cagaatagaacaaaaggcattgactctccatctatctttattaccttcat
gattCAATTCACCCTAATGGTcgatgttttcattttagttcgAAGACCAC
GAGAAGCAGTCCATGACTCTGCTCATCTGTTGTATCTGTCAAAGAAATCA
AGAGAGCAAGCACAAGAACTCAAAACTGATATTGTTGCATTTGATAATGT
AACATTCATCAAAAAACTGGTACACCTTATGGGAACTTATTTTCGTGATG
CTAGATTTGCCAACATTTgagtttttcatgattttctaaaataaaaaccc
ttTGTTTTTGTCTAAAATCACCTTTTTTAGACAATAAAAGCTAATTTACC
ATACCCTTTGCAAAAATTAGTACtattcaatattaaaaaatcgCTGCTTC
ACCAAATAACTTCCTCGCCAAATTAATGTTTAGGGTTTTTGCTGCTCCTA
GTTGAGACAATAGCCTGAGAACTCAAAATGtgtaaatcacaaaaaatttg
TACAGCTACTTGAAATAATTTAAAACCAAGCTGGCACATTATTATGGAGA
GTTTTGTTAAACAGTTCTAATGAGCAGCCAGCTTGGCTTATGTCCAAAAT
ATTCAGTAACTTGCATTTTCAGAGGAAATGTATTCATTTGAATTAAgagc
aaactttttgattgttAGCCATAGGGTTGTTATTTTCAAATACAGTTATG
ACTCTGACTATGAAATCACTATTTCCCTATTTCACTAGATTGGTTCAGTG
AATGGATATCAACTCACTGGATGTTCCGANA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009791XLOC_009791Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017494-exon-sc0000269-1491911889:141948..142266TCONS_00017494-exon-sc0000269-1491911889:141948..142266Clytia hemisphaericaexon
TCONS_00017494-exon-sc0000269-1510915933:141948..142266TCONS_00017494-exon-sc0000269-1510915933:141948..142266Clytia hemisphaericaexon
TCONS_00017494-exon-sc0000269-1575043694:141948..142266TCONS_00017494-exon-sc0000269-1575043694:141948..142266Clytia hemisphaericaexon
TCONS_00017494-exon-sc0000269-1491911889:142786..142828TCONS_00017494-exon-sc0000269-1491911889:142786..142828Clytia hemisphaericaexon
TCONS_00017494-exon-sc0000269-1510915933:142786..142828TCONS_00017494-exon-sc0000269-1510915933:142786..142828Clytia hemisphaericaexon
TCONS_00017494-exon-sc0000269-1575043694:142786..142828TCONS_00017494-exon-sc0000269-1575043694:142786..142828Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:141948..142828 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	8.87699	3.559	4.65634	6.25072	0	1.12921	0	0	0	0	0.912871	0	5.45498	0.734941	0.156525	1.41657	2.22641	4.30802	0	0.839961	0.806542	9.85544	3.27579	4.79131	1.67553	9.81917
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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