TCONS_00017524 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017524
Unique NameTCONS_00017524
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1119

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017524 ID=TCONS_00017524|Name=TCONS_00017524|organism=Clytia hemisphaerica|type=transcript|length=1119bp
AAGATATAAACCACAAGAAGCAGACAACAAAGTTAACTCTTGGTATCATG
ATGAAaatcgtttttctttttctggtTTGTTTTGTTCTTCAACAAACAAG
TTCAAATGAGTTGAAGGAAGGAGAATCTCACAGCCGTGAACGCAGAGCAG
TGTGTGGTTATCAAAGATATAACACTCGATTTAGGATGTGCTGCAGTGGC
AAATTGGGCCTAAAAGGATCTAACAATGCCTGCTGCGGTCAAACAGGTTA
TAACACTCGATTCAGGATGTGCTGCGGTGGCAAATTGGGCCTAAAAGGAT
CTAGCAATACCTGTTGCGGACAAACAGGTTATAACACTCGATTCAGGATA
TGCTGCGGTGGTAGATTGGGCTTAAAAGGATCTAACAATGCCTGCTGCGG
TCAAACAGGCTATAACACTCGATTCAGGATATGCTGCGGTGGCAAATTGG
GCTTAAAAGGATCTAACAATGCCTGCTGCGGTCAAACAGGTTATAACACT
CGATTCAGGATATGCTGCGGTGGCAAATTGGGCTTAAAAGGATCTAACAA
TGCCTGCTGCGGTCAAACAGGTTATAACACTCGATTCAGGATATGCTGCG
GTGGCAAATTGGGCTTAAAAGGATCTAACAATGCCTGTTGCGGTCAAACA
GGTTATAACACTCGATTCAGGATATGCTGCGGTGGTAGATTGGGCTTAAA
AGGATCTAACAATGCCTGCTGCGGACAAACAGGTTATAACACTCGATTTA
GGATGTGCTGCAATGGTCGACTATGTTAAAAGAATATCTGTATAACTACA
GCACCGAGTTTTAGTTTAAACATATGGGGATAGAGAAGGTATCTCCAGCA
acctcaagcaagaaaaagtgctTCCGGAACGACTGATTTAATTTATcgct
ttctttattttcacgcggcatatttttcaaaatctggcgattaattttac
tttcaatctgccGTTTGTGCGAAAATCACGCTTTAATTCCATCAAAGAGT
TTCAATAATAGCCCCTTCAggactttaaactcaatggtattAACTCTTAT
CAAGgatttgtagaaataaaaggagcgaaatgatattgaaaatgttattt
cttACTTTGTATTTCTATA
Run BLAST on NCBI

transcript from alignment at sc0000269:349045..350399+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017524 ID=TCONS_00017524|Name=TCONS_00017524|organism=Clytia hemisphaerica|type=transcript|length=1355bp|location=Sequence derived from alignment at sc0000269:349045..350399+ (Clytia hemisphaerica)
AAGATATAAACCACAAGAAGCAGACAACAAAGTTAACTCTTGGTATCATG
ATGAAaatcgtttttctttttctggtTTGTTTTGTTCTTCAACAAACAAG
TTCAAATGAGTTGAAGGAAGGAGGTAAATATGTAACATGTTCGAACCCAG
TAACTCTAATGAAACATAAGGTTTCCTGTTTGAAAACTAGATTTTGCCTT
TTTAACAACCAGGTTACAAACAACAAATCCATCTTCCCTTGTTCTTATAT
CATCTCATCCTTTCTATCTATGAGAAGGAATAGTAAAATTAAAACAGGAA
ACCTGACATTTAAAGATCCACATTCAAACATTCAACAACATGCTCTGTTT
CCCTTTCAGAATCTCACAGCCGTGAACGCAGAGCAGTGTGTGGTTATCAA
AGATATAACACTCGATTTAGGATGTGCTGCAGTGGCAAATTGGGCCTAAA
AGGATCTAACAATGCCTGCTGCGGTCAAACAGGTTATAACACTCGATTCA
GGATGTGCTGCGGTGGCAAATTGGGCCTAAAAGGATCTAGCAATACCTGT
TGCGGACAAACAGGTTATAACACTCGATTCAGGATATGCTGCGGTGGTAG
ATTGGGCTTAAAAGGATCTAACAATGCCTGCTGCGGTCAAACAGGCTATA
ACACTCGATTCAGGATATGCTGCGGTGGCAAATTGGGCTTAAAAGGATCT
AACAATGCCTGCTGCGGTCAAACAGGTTATAACACTCGATTCAGGATATG
CTGCGGTGGCAAATTGGGCTTAAAAGGATCTAACAATGCCTGCTGCGGTC
AAACAGGTTATAACACTCGATTCAGGATATGCTGCGGTGGCAAATTGGGC
TTAAAAGGATCTAACAATGCCTGTTGCGGTCAAACAGGTTATAACACTCG
ATTCAGGATATGCTGCGGTGGTAGATTGGGCTTAAAAGGATCTAACAATG
CCTGCTGCGGACAAACAGGTTATAACACTCGATTTAGGATGTGCTGCAAT
GGTCGACTATGTTAAAAGAATATCTGTATAACTACAGCACCGAGTTTTAG
TTTAAACATATGGGGATAGAGAAGGTATCTCCAGCAacctcaagcaagaa
aaagtgctTCCGGAACGACTGATTTAATTTATcgctttctttattttcac
gcggcatatttttcaaaatctggcgattaattttactttcaatctgccGT
TTGTGCGAAAATCACGCTTTAATTCCATCAAAGAGTTTCAATAATAGCCC
CTTCAggactttaaactcaatggtattAACTCTTATCAAGgatttgtaga
aataaaaggagcgaaatgatattgaaaatgttatttcttACTTTGTATTT
CTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009798XLOC_009798Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017524-exon-sc0000269-1491911889:349045..349167TCONS_00017524-exon-sc0000269-1491911889:349045..349167Clytia hemisphaericaexon
TCONS_00017524-exon-sc0000269-1510915933:349045..349167TCONS_00017524-exon-sc0000269-1510915933:349045..349167Clytia hemisphaericaexon
TCONS_00017524-exon-sc0000269-1575043694:349045..349167TCONS_00017524-exon-sc0000269-1575043694:349045..349167Clytia hemisphaericaexon
TCONS_00017524-exon-sc0000269-1491911889:349404..350399TCONS_00017524-exon-sc0000269-1491911889:349404..350399Clytia hemisphaericaexon
TCONS_00017524-exon-sc0000269-1510915933:349404..350399TCONS_00017524-exon-sc0000269-1510915933:349404..350399Clytia hemisphaericaexon
TCONS_00017524-exon-sc0000269-1575043694:349404..350399TCONS_00017524-exon-sc0000269-1575043694:349404..350399Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:349045..350399 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0392415	0.0642173	0	0.163948	6.58431	2.47365	35.2157	40.6335	130.143	382.369	200.489	109.178	41.5091	49.4683	40.4616	46.1509	19.0116	16.717	40.4242	159.963	34.4704	44.2364	36.203	49.7716	37.6317	85.7228	195.277	160.662	648.328	461.31
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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