TCONS_00017533 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017533
Unique NameTCONS_00017533
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1752

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017533 ID=TCONS_00017533|Name=TCONS_00017533|organism=Clytia hemisphaerica|type=transcript|length=1752bp
GAAATAGTGGAGCGCAATTTTCAAGTAAATCTTGAGGTGCTTCTCAACTT
TGATCATAACGTCCGTGCTGGCGATAAAGAATTTGTAAGCGAAAATCATC
AAGACTGTGAACGCATACGGGTACTTGCTTGCTAAAGTTTGCTGAGGTTT
ACCGTTATCCATTTCACCGTATTGTTTAGAAAGAGCCGTAGTACGGGGGC
TTTTACGTACACCAGGTTTGGAGGCGGGTGACTTTTCAGAGTAACACGCA
TACATCGATTGTGACGGTTTGGACGATAATGCTTGAGCGTCGGGTTGAGC
GTCATTTGCTTGATGGATGTCACTGAAACTCTTGATAAGTGGCATGGTGA
TTTTTCGTTTTAAGAAATTTGGTAAATAGTCATTAATGCCACTAGCTTGG
CTATTTGCTGGGGTGGACTCTAAAGGACCACCGCAGGAGTCAATCGGCAC
TGAAGGGTCGCTGTGGGAGTTTTCCGACAATGAAGGGCCACCGTAGGAGT
CGATCGGTGCTAAAGGCCCACCGGAAGAATTGTTTGACCCCGAGGAGCCG
CTGCGAGATTTGTTACGAGGTGATCTTCTAAGGGTTGAAGGGCTGCTGTA
AGTATTGTCTGACGGTGGAGGGTTGAGAGAGTTGTTACGGGTTGAAGGGC
CGCCGTAAGAATTGTTACGGGTTGAAGGGCCGCTGTGAGAGTTGTTACGA
GTTGTAAGGCCGCCGTAAGAGTTGTTCGACACTGGAAGGTCGTCGTAAGA
TTTATTCGACGCTGAAGAACCTCCGTAAGAGTTATTACGGGTTGAAGGTC
CGCCGTAAGAATTGTTGCGGGTTGAAGGTCCGCCGTAAGAATTGTTGCGG
GTTGAAGGGCCACTGTGAGAGTTGTTACGAGTTGTAAGGCCGCCGTAAGA
GTTGTTCGACACTGGAGGGTCGTCGTAAGAGTTGTTCGACACTGGAAGGT
CGTCGCAAGAGTTATTCGACGCTGAAGAACCTCCGTAAGAGTTATTACGG
GTTGAAGGTCCGCCGTAAGAATTGTTACGGGTTGAAGGTCCGCCGTAAGA
ATTGTTACGGGCTGAAGGGCCACTTTGAGAGTTGTTGCGACTTGTAGAGC
CGCCGTAAGAATAGTTACGGGCTGAAGGGTCGATGTGAGAGTTGTTACGA
CTTGCAGGGCCGCCGTACGAATTATTACGGGCTGAAGGGCCGCTTTGAGA
GTTGTTACGACTTGTAGAGCCACCGTAAGAATAGTTACGGGCTGAAGGGT
CGATGTGAGAGTTGTTGCGACTTGCAGGGCCTCCGTACGAATTGTTACGG
GCTAAAGGGTCACTGTGAGAGTTGTTACGACTTGTAGGACCGCCGTAAGA
GTTGTTCGACGCTGAAGAGCTGACGATAGAGTTGTTCGACGCTGAAGAAC
CGTCATACGAGTCGATCTCTTCATCTGGAACGTAGTCATTGTTTGAGTTT
TGATAGCTTCGGAATGGATTCCACAGTCCGAAGGGTGAGCGAAGTAATCG
GTTGAAAACGCTTGCTTGAAATGAATGGACTGTTTTCCCATCTCGTAGAA
TCATATGTTGGCTTTCAAAAGGTGAATAAAAACTTCCATCCCGCAATATC
ATCGGCATGCTTGCTGTTGAAGTATAGAAGACAGGTTGGTGTCTGTATCA
GCTGGATGCAAAATTTGTGTTGCAAtgtgaataaaattaaaaaacttttt
cacgaATCAATGTTTCATGTCTGCAGATATTCAGCtttccgccatcttga
at
Run BLAST on NCBI

transcript from alignment at sc0000269:52926..55187-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017533 ID=TCONS_00017533|Name=TCONS_00017533|organism=Clytia hemisphaerica|type=transcript|length=2262bp|location=Sequence derived from alignment at sc0000269:52926..55187- (Clytia hemisphaerica)
GAAATAGTGGAGCGCAATTTTCAAGTAAATCTTGAGGTGCTTCTCAACTT
TGATCATAACGTCCGTGCTGGCGATAAAGAATTTGTAAGCGAAAATCATC
AAGACTGTGAACGCATACGGGTACTTGCTTGCTAAAGTTTGCTGAGGTTT
ACCGTTATCCATTTCACCGTATTGTTTAGAAAGAGCCGTAGTACGGGGGC
TTTTACGTACACCAGGTTTGGAGGCGGGTGACTTTTCAGAGTAACACGCA
TACATCGATTGTGACGGTTTGGACGATAATGCTTGAGCGTCGGGTTGAGC
GTCATTTGCTTGATGGATGTCACTGAAACTCTTGATAAGTGGCATGGTGA
TTTTTCGTTTTAAGAAATTTGGTAAATAGTCATTAATGCCACTAGCTTGG
CTATTTGCTGGGGTGGACTCTAAAGGACCACCGCAGGAGTCAATCGGCAC
TGAAGGGTCGCTGTGGGAGTTTTCCGACAATGAAGGGCCACCGTAGGAGT
CGATCGGTGCTAAAGGCCCACCGGAAGAATTGTTTGACCCCGAGGAGCCG
CTGCGAGATTTGTTACGAGGTGATCTTCTAAGGGTTGAAGGGCTGCTGTA
AGTATTGTCTGACGGTGGAGGGTTGAGAGAGTTGTTACGGGTTGAAGGGC
CGCCGTAAGAATTGTTACGGGTTGAAGGGCCGCTGTGAGAGTTGTTACGA
GTTGTAAGGCCGCCGTAAGAGTTGTTCGACACTGGAAGGTCGTCGTAAGA
TTTATTCGACGCTGAAGAACCTCCGTAAGAGTTATTACGGGTTGAAGGTC
CGTCGTAAGAATTGTTACGGGTTGAAGGTCCGCCGTAAGAATTGTTCGAC
ACTGGAAGGTCGTCGCAAGAGTTATTCGACGCTGAAGAACCTCCGTAAGA
GTTATTACGGGTTGAAGGTCCGTCGTAAGAATTGTTACGGGTTGAAGGTC
CGCCGTAAGAATTGTTGCGGGTTGAAGGTCCGCCGTAAGAATTGTTGCGG
GTTGAAGGGCCACTGTGAGAGTTGTTACGAGTTGTAAGGCCGCCGTAAGA
GTTGTTCGACACTGGAGGGTCGTCGTAAGAGTTGTTCGACACTGGAAGGT
CGTCGCAAGAGTTATTCGACGCTGAAGAACCTCCGTAAGAGTTATTACGG
GTTGAAGGTCCGTCGTAAGAATTGTTACGGGTTGAAGGTCCGCTTTGTGA
GTTGTTACGACTTGTAGGACCGCCGTAAGAGTTGTTCGACGCTGAAGAAC
CTCCGTAAGAGTTATTACGGGTTGAAGGTCCGTCGTAAGAATTGTTACGG
GTTGAAGGTCCGCCGTAAGAATTGTTACGGGTTGAAGGTCCGCTTTGTGA
GTTGTTACGACTTGTAGGACCGCCGTAAGAATTGTTACGGGCTGAAGGAT
CGCTGTAAGAGTTGTTACGACTTGTAGGTCCGCCGTAAGAATTGTTACGG
GCGGAAGGGTCGCTGTGAGAGTTTTCTGACAATGAAGATTCACCGTAGGA
GTCGATCGGTGCTAAAGGTCCGCTTAGTGAGCTGTTACGACTTGTAGGTC
CGCCGTAAGAATTGTTACGGGCTGAAGGGCCACTTTGAGAGTTGTTGCGA
CTTGTAGAGCCGCCGTAAGAATAGTTACGGGCTGAAGGGTCGATGTGAGA
GTTGTTACGACTTGCAGGGCCGCCGTACGAATTATTACGGGCTGAAGGGC
CGCTTTGAGAGTTGTTACGACTTGTAGAGCCACCGTAAGAATAGTTACGG
GCTGAAGGGTCGATGTGAGAGTTGTTGCGACTTGCAGGGCCTCCGTACGA
ATTGTTACGGGCTAAAGGGTCACTGTGAGAGTTGTTACGACTTGTAGGAC
CGCCGTAAGAGTTGTTCGACGCTGAAGAGCTGACGATAGAGTTGTTCGAC
GCTGAAGAACCGTCATACGAGTCGATCTCTTCATCTGGAACGTAGTCATT
GTTTGAGTTTTGATAGCTTCGGAATGGATTCCACAGTCCGAAGGGTGAGC
GAAGTAATCGGTTGAAAACGCTTGCTTGAAATGAATGGACTGTTTTCCCA
TCTCGTAGAATCATATGTTGGCTTTCAAAAGGTGAATAAAAACTTCCATC
CCGCAATATCATCGGCATGCTTGCTGTTGAAGTATAGAAGACAGGTTGGT
GTCTGTATCAGCTGGATGCAAAATTTGTGTTGCAATGTGAATAAAATTAA
AAAACTTTTTCACGAATCAATGTTTCATGTCTGCAGATATTCAGCTTTCC
GCCATCTTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009800XLOC_009800Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017533-exon-sc0000269-1575043694:54391..55187TCONS_00017533-exon-sc0000269-1575043694:54391..55187Clytia hemisphaericaexon
TCONS_00017533-exon-sc0000269-1575043694:54031..54240TCONS_00017533-exon-sc0000269-1575043694:54031..54240Clytia hemisphaericaexon
TCONS_00017533-exon-sc0000269-1575043694:53851..53880TCONS_00017533-exon-sc0000269-1575043694:53851..53880Clytia hemisphaericaexon
TCONS_00017533-exon-sc0000269-1575043694:52926..53640TCONS_00017533-exon-sc0000269-1575043694:52926..53640Clytia hemisphaericaexon
TCONS_00017533-exon-sc0000269-1510915933:54391..55187TCONS_00017533-exon-sc0000269-1510915933:54391..55187Clytia hemisphaericaexon
TCONS_00017533-exon-sc0000269-1510915933:54031..54240TCONS_00017533-exon-sc0000269-1510915933:54031..54240Clytia hemisphaericaexon
TCONS_00017533-exon-sc0000269-1510915933:53851..53880TCONS_00017533-exon-sc0000269-1510915933:53851..53880Clytia hemisphaericaexon
TCONS_00017533-exon-sc0000269-1510915933:52926..53640TCONS_00017533-exon-sc0000269-1510915933:52926..53640Clytia hemisphaericaexon
TCONS_00017533-exon-sc0000269-1491911889:54391..55187TCONS_00017533-exon-sc0000269-1491911889:54391..55187Clytia hemisphaericaexon
TCONS_00017533-exon-sc0000269-1491911889:54031..54240TCONS_00017533-exon-sc0000269-1491911889:54031..54240Clytia hemisphaericaexon
TCONS_00017533-exon-sc0000269-1491911889:53851..53880TCONS_00017533-exon-sc0000269-1491911889:53851..53880Clytia hemisphaericaexon
TCONS_00017533-exon-sc0000269-1491911889:52926..53640TCONS_00017533-exon-sc0000269-1491911889:52926..53640Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:52926..55187 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.0232009	0	0	0.260688	0.26141	0	0.505774	0.201595	0.0374545	0	0	0.151312	0	0.0275977	0	0.41842	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017533 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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