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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017542 ID=TCONS_00017542|Name=TCONS_00017542|organism=Clytia hemisphaerica|type=transcript|length=299bp
CAAGGATTAACCTGCGCTCGCTGTACTTTCGCTGTTCTAAAATGTAAATG
GTAGACTTTGTAGCGCACATGAACTTTTTTCTCGAAAGTGTGACTCGCTT
GTCGCtttattttctccaactttcCTCTTTTTTCTCGACATCTTTTTGAT
TAAATATGCCACCCAAGAAAGCTGATAAAGCAAGTAAAAAGACTCAAGAG
AAAGCAAAGCAGAAAGTTGTTGAGgaCAAAACATTTGGATTGAAGAATAA
GAAAGGAAAGAAACAACAAACATACATAAAAACTGTTCAACATCAGGTA Run BLAST on NCBI transcript from alignment at sc0000269:87628..92994- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017542 ID=TCONS_00017542|Name=TCONS_00017542|organism=Clytia hemisphaerica|type=transcript|length=5367bp|location=Sequence derived from alignment at sc0000269:87628..92994- (Clytia hemisphaerica)
CAAGGATTAACCTGCGCTCGCTGTACTTTCGCTGTTCTAAAATGTAAATG
GTAGACTTTGTAGCGCACATGAACTTTTTTCTCGAAAGTGTGACTCGCTT
GTCGCTTTATTTTCTCCAACTTTCCTCTTTTTTCTCGACATCTTTTTGAT
TAAATATGCCACCCAAGAAAGCTGATAAAGCAAGTAAAAAGACTCAAGAG
AAAGCAAAGCAGAAAGTTGTTGAGGTGAGTTCTTATTGTAATTCTGGGGC
TGGGTCGACCGGGCGGGTTGCCATGTGTGGAACCAGTCTGGAATTCATGC
ACAGTAATTCGGCGTGAGAATGTCCTCAATTGGGTGCAACCTTCTTGATC
CTCAAAATATCTTCGGCGTGGCTTTTGCATGGATTCCACACTGGGTGTGG
AAACGATGCAAAGGCTACGCCACGACGACCCACGGCATGGCCCGAACATG
TTCGGGCCTGTTCGGACCATGCTCGGGCCACAAAAAAGTATTATTGAATC
GGCCCGAACATTTTGTTCGGACCATGTTCGGGCCACAAAAAAGGATTATT
GAATCGGCCCGAACATTTTGTTCGGAACATGTTCGGGCCTGTTCGGACCC
TGCTCGGGCCACAAAAAAGTATTATTGAATCGGCCCGAACATTTTGTTCG
GACCATGTTCGGGCCATGTATTTACAATTGATACGGATTTCATTTACCTT
TCCTCACGTGCGTTTGCGTAGGGTAAAATGGCGAAATGCGAAAATCGAAT
TTGGCAAAAAATTTTTGAAAAATGACCCTACAAGATTTGACTATATCTTT
TTATTCCATGAAGAGATTACTTTCAAATAAAAAATGTATTAACAATGAAT
GTGTGACTATGTTTGCTACATCGTCTAGGCTAAAAAAAGTGCGAAAAGAC
ACGAACGCCATTTTTTAATGAGTGACGTTATGATTTTTTTGATTGCGGAT
GTGTACAGGAACTCGCCAAATGTTCCTAACTGTCTATTTAAAAGATATGG
ACATAAAAAAGGCACTTTTTTGGGTGATAATTAAGATTTTACTTAGAAAC
TTTAATTCTCTTACCCCCGTCTCCCCCCCCTGATATGAGCAAGGGAACCA
TGTTGGCCACNTTTTACTTAGAAACTTTAATTCTCTTACCCCCGTCTCCC
CCCCCTGATATGAGCAAGGGAACCATGTTGGCCACCCCTACTGAAATTTT
CAGATAAAAACAAACAAGGAATTAATTCCTGTAACTCGAAGAAAATTGGA
AAACAGCTGGTTTTTGACCGTTTCTGATCCTAAAGTGCTATTTTTTAGTA
AAAGCTATACAATTTATGTTTGGATTTCTAGAAAGCTTACCCATTCATTG
TCAATACATTTTTTATTTGAAAGTAATCTCTTCATGGAATAAAAAGATAT
GGTCAAATCTTGTATCTTGTAGGGTCATTTTTCAAAAAAATTTTGCCAAG
TTCGATTTTCGCATTTCGCCATTTTACCCTACGCAAACGCACGTGACGCC
GAATTGTTATTTGTTTGAACTGAGATCTACGCCAAAAAAAGGTCTGCATG
TAGGGGGGTTTGGGGTGCTGTAGCCCCCCCAATGAGTCCTGAGCCCTGGT
GGGGGGTTCAGGGGCGAAGCTTTGACTTACGCCAAAATCTTACTTTGTAT
CCGTTCCTTACTATTCACCAAAAGTAATTACTGCCTCACGCCGAATATAT
CCGTCGCACTGTTCACCATTTCCAAGCTGGCCGGGTTGTGAAGCAATCCA
GACAGTATAGACTTAACCAGTTGGCTGGGTGTTTAAGATAAAAACAGCAA
TTATTGCTTATTTCGGCAATTATTGCTATAAACGGCAATTTTTTCAACGA
TGAAATGCTTTAATCAACAAAATGTGTTGTCTTTATAAGGGCAAAGATGT
TAGAGGTGTTTGAAAATTGTAAAATTGCATCGAGAAAAAGGTTTTTCGGA
TTTTTAACAGTGATTTTTTCGATTTTTCGTTGCTCATTAACATGAAAAGT
TCTAAAATAATATGTAAAAAGATCCTGCATCGATGCCGAAACACAGCCAA
AACGAGATAACAAAACCCCCCGTTGTAAATTTGTTTACTAATACATGTGA
CTCGATTTTGCTAACTGAATCTCCAACAAAAACCAGTTGAAAACAAAACT
AAACGAGGCGTGTCAAATACCACGTGTTCAATAATAATATCAATTTTTCT
TTCCAAAAACGGCAGTAATTGCCGAAAACGGTAATGATCGACGTAATCTA
GCAATTCAATCACTTTGTTAACAACCCTTCAAAGACTCGATAACCGTTCG
AGTACTTTGATTGTTATTGATCAGTCCGTCACAAAGTGACATACAAACAA
AACTCAACATCCTTACAAAAGTTGTCTTTTTGATTTCCCAAACATTCATC
TCAAGTGTTCACTTCCACAATAATTTATGTAATTGCAATTTCTGTCAGTC
CACAGTCAGTTAGGAACATTTGGCGAGCTCCTGTACGCGGCTGCAATCAA
AGAAATTATAATATCACTCATTAAAAAATGACGTTTGTGTCTTTTCACAC
TTTTTTTAGCCTAGACGATGTAGCAAACATAGTAAGTATAGGCACACTAT
GCTTTTAATTTGCTGAAATTTTTTTTTGCGTTGGAAAAACTTTTACAAAC
TTTCAGCGATGATTGACCAAACTAATACAATGAAAATTATCCAGCGCATT
TTTTATCTTCTTACCTTCTTCATTTTTAATGAAGTACTCAAAGTTTACTG
AAGGTAAGCACATAAGATATTCTTATAATTAATGATATTCATTGAAACAT
GCTTCGTTGTGCACTGCGGTGGAGTGCATGACTTAACTCGCGCGGCAACT
AACTCGCCTTCTGTTGGAAGATCATATTGGATGTTTTGGCGTTACCACCC
TCGAAGCAGCAGGCGCCTTTGTCTTCCAGCAACTATTTCCGCCATTTTAG
ACTTAGGTAAGTAGCAATGTTTTTGGTTGTTTTCGATGGAAAATGGTAAG
AAACTTAAATTTAAAAGTGTCATTTAGTTTTTGCTGGCTTATAGAATGGC
AGGATCCTGGATGGTTTCCCTAACTGACAGTCGGGTTCAACATATAAGCG
TGTTTTTATTCATGTGACCAAAGTGCCTACTAAAACAATCTGGGGTAAGT
GGCGAAGCAACATAGCAGATTATTCGTAAAGTAAAGAAATATCTTTTGGC
ATTGACAATCAAATATAATATATTACATTATATTTCATTGATTCAAAAAT
CAAAAATTCATTTTGCAATCGCAAAAAAATAAAAAAATGAATTAATATTA
CATAATAAAGCGCCCCCGTCCCCGTCCTTTACTCTCGTCTAATTTCTGAT
CTCGGGACGTGTAAAACGCCCGTCCGCCCAATATCCATCCAATCATCTTA
AATTCACTTTAGTTGTGCTTTGACTTTTGAAAAATATTATTTAAAAACTA
TGAATTTATAACAATTACAAAAAACAAAAAGCTCGTATTTTCATCAGTGA
AACATAATCAATAAATTTCTAGTTTCAATTTTCAGTGGGCGTTTTTCTAG
CGCTTCGTTGATCGCGCAATTTTTGAGTCACACCAACTTTCTCGGCAACT
CTTAATAATTATGCATTGTCAAATTTGGTTCCCCATTGTCAAGTCAGGAT
CGATGGTGACATCACCTAAGCATATAAAAGAAAAGATTACGTCAGTTTTA
TGCATATATTGATTTGTGAGATATTCTATTCGCCGCGCGAGCGCACTTTT
CGTAGACTAGTTGGAATACCTTCTTTTACTGGCGGGATTGATGGTAACTT
TTCATCTTCGTTATTTTTAAAATGAAGCATTGCATCAACTATTTACATCA
TCCATTACATTATAACACACACAACATAATGAGCCTTTATAGCATCCAAC
CCATGAACGCTAAATAACTGACTAAATTACGGAGACATTACATAATGTGT
CTCAAATTAACTCAACAAAAGAAATGCAAGTTCAGGACTTATACAAATAC
TACAAATTGATGAAAATAAGAAGAAACACCAGATCTCAACTGGATGGCCA
ACAAGAAGGAACTCGAATGATCAACGAACAACCAAAAGGAAGAAACCCGG
GAAGAAACATAAAGAAGAAATATTTATTGTAAATTAAACTTGTGCACTAA
AGAGAAAAGAATCTAAGGGAAAAGAGTAAAATTATAGCGAACACTTTAAT
AAATAATTAGAGTCATTTATTGTTTGAAATAATTGGGAAGATTAAGGTAA
TCTTATTAGTGATAAAAGGTAATTATCACAATATTTTGAAAATATGCATT
TGTTTAAAAAAATTTGAAAATTTAGAGGGAAAAACTGCATTTTAAGTGCA
TATTTTAACTTCCTGAAAACTTCCTGTGGTACGTTTTCAATGCTAAACTT
TTACAGGGGAAAATGCTAAAAATTTCAGACAGATAGATGTCTCTGGTGGT
TAGTGCCTTTGTTTTTAGTATCCCCAGTAAAAAGAATTACAGTGTCGCAA
ATACATTTGAAAAAGTGCACTCACGAGTACTCATTTTCAAATTTTGAAAG
AACGAAAAGACGTATCTTAATAATAGTTTTTGCAAAAGTAAGTCTAATAA
ATTCTCTAAAAAAATTTCCAACCTGGAGGTATGAAAGTTTTTTTCAACAA
TCTTTTTTTGTTACTGCCGCAATCGCTACCAGTGCAGATACGGTTTCAGA
GTTACAGATTTATATATTGACACACACATTTTTACAGTGTCTACTGTCAT
GCCTGCAAGTTCTTTGTTGATTTGATTTAAAGTCAGTTCATATTCAAAAA
CAGCAGAGCTTTTAGAGCAAGGTTAGAAATCTGAAATCTGGAATGTTTTG
CTTTATTGCGATTAACCATTTTGTTGTTTTGATAAGAGGGGACCAAATTT
CTGTACAATCTGAAAAATGGCTTTGGAGTGACACATTGTACCAAGTAACC
TTTTATTAAAAGAGAGAATGGATGGTATAAGAAAGTTATCTATAAAGCAC
CACATCCCCAATCAGAGCAAATAATTGATGATGAAATAACCATTTTTTAC
TTTTTTAGGACAAAACATTTGGATTGAAGAATAAGAAAGGAAAGAAACAA
CAAACATACATAAAAACTGTTCAACATCAGGTATTAAAAGGTTTGCGGGT
GAAGTTTATCTTTTAAAAGCATTTTCAACCAGTTACATTTCTATGGCAGC
AATGCTTAATTAACTACTTGTCTATTTATAAAATGGACAAAACCTTACTT
GGGTTTAGATTTTTTAAGTGTTTCTGTGTTTTGACATTCAAAAATATTTT
CATTATTAAAATAACATAATAATNAAAGAAACAACAAACGTACATAAAAA
CTGTTCAACATCAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017542-exon-sc0000269-1575043694:92771..92994 | TCONS_00017542-exon-sc0000269-1575043694:92771..92994 | Clytia hemisphaerica | exon |
| TCONS_00017542-exon-sc0000269-1575043694:87886..87936 | TCONS_00017542-exon-sc0000269-1575043694:87886..87936 | Clytia hemisphaerica | exon |
| TCONS_00017542-exon-sc0000269-1575043694:87628..87651 | TCONS_00017542-exon-sc0000269-1575043694:87628..87651 | Clytia hemisphaerica | exon |
| TCONS_00017542-exon-sc0000269-1510915933:92771..92994 | TCONS_00017542-exon-sc0000269-1510915933:92771..92994 | Clytia hemisphaerica | exon |
| TCONS_00017542-exon-sc0000269-1510915933:87886..87936 | TCONS_00017542-exon-sc0000269-1510915933:87886..87936 | Clytia hemisphaerica | exon |
| TCONS_00017542-exon-sc0000269-1510915933:87628..87651 | TCONS_00017542-exon-sc0000269-1510915933:87628..87651 | Clytia hemisphaerica | exon |
| TCONS_00017542-exon-sc0000269-1491911889:92771..92994 | TCONS_00017542-exon-sc0000269-1491911889:92771..92994 | Clytia hemisphaerica | exon |
| TCONS_00017542-exon-sc0000269-1491911889:87886..87936 | TCONS_00017542-exon-sc0000269-1491911889:87886..87936 | Clytia hemisphaerica | exon |
| TCONS_00017542-exon-sc0000269-1491911889:87628..87651 | TCONS_00017542-exon-sc0000269-1491911889:87628..87651 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000269 | supercontig | sc0000269:87628..92994 - |
Blast
The following BLAST results are available for this feature:
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