TCONS_00017546 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017546
Unique NameTCONS_00017546
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length864

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017546 ID=TCONS_00017546|Name=TCONS_00017546|organism=Clytia hemisphaerica|type=transcript|length=864bp
tttcaggagaaaaaaaaacatagaagaatattttgtaaaataagaaaaaa
caactTGAAGAAAATTCGATTGAGGCTTGGAGAGATTTTAATAGTTTTCA
TTAACGAAGAAATGAAGGGATAAATATTTTCAGTACTTTGGCTTGAAATT
TTTTACACCATGGCGGTGACCATCACAACGGACTATGGGGATATGAAAAT
CGAATTATTTTGTGAGGATACTCCAAAAACATGTGAAAACTTTTTGGCGT
TATGTGCAAGTGGATATTATAATGGTTGCTCCTTTCACAGaaacATTAAA
GGCTTCATGGTCCAGACAGGTGATCCTTCAGGATCAGGCAAAGGTGGAAA
GAGCATTTGGGGAggaaaatttgaagatgaaatTGTGCCTCATTTAAAGC
ACAACGCACGTGGCATCCTTTCGATGGCAAACAGTGGTCCAAACACCAAT
GcaagtcagtttttttttacGTATGCCAAGCAACCGCACCTTGATATGAA
GTATACTATCTTTGGCAAAGTGATCGATGGTTTTGACGTTTTGGACGATT
TGGAGAAATTGCCGGTAAACGAAAAGAACTTTCGTCCTCATGATAAAGTT
TACATCAATAATGTCAACATTCATGCAAATCCACTGGCTGATTGATTGTA
CTCAACGCTGGTTTGGGTTTATAAAAGGATATTTTTAACTGTAAAATCAT
TTAGGCCCTTTTTATTTATACAGAAACAACAGAAACCCTGTCATTTAAAT
TCCTTTTTTCTGATCCTTCTAATGCCAAAAATAccaattatatatatttt
aagaGTACATAATTGCTGACAACCAAGGAACGATGTCAGTCTGCACTGTA
AAGTCtattttttt
Run BLAST on NCBI

protein sequence of TCONS_00017546-protein

>TCONS_00017546-protein ID=TCONS_00017546-protein|Name=TCONS_00017546-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MAVTITTDYGDMKIELFCEDTPKTCENFLALCASGYYNGCSFHRNIKGFM
VQTGDPSGSGKGGKSIWGGKFEDEIVPHLKHNARGILSMANSGPNTNASQ
FFFTYAKQPHLDMKYTIFGKVIDGFDVLDDLEKLPVNEKNFRPHDKVYIN
NVNIHANPLAD
Run BLAST on NCBI

transcript from alignment at sc0000269:315178..323871-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017546 ID=TCONS_00017546|Name=TCONS_00017546|organism=Clytia hemisphaerica|type=transcript|length=8694bp|location=Sequence derived from alignment at sc0000269:315178..323871- (Clytia hemisphaerica)
TTTCAGGAGAAAAAAAAACATAGAAGAATATTTTGTAAAATAAGAAAAAA
CAACTTGAAGAAAATTCGATTGAGGCTTGGAGAGATTTTAATAGTTTTCA
TTAACGAAGAAATGAAGGGATAAATATTTTCAGTACTTTGGCTTGAAATT
TTTTACACCATGGTACGTATATCGCTTTCATTCCTCCCCTAAACCTCTAC
ACAAACAACCTAAAATCAAGAATTTGTCGAGCTACTTAAAAGGTCTGGGA
CTGAACTTAATTCAAAACAACTCATTAGAAGTTTTTCGTCGCGCCTTTGT
CTGTTGGATTTTAGTTTATTTCCTAAAGTAGATTCTAAGATTTTAACATT
GTCCTGAATTAAAAAAATGAAGAAGATATCCAATAAACTTTATGTCTCTC
TTTTAGGCGGTGACCATCACAACGGACTATGGGGATATGAAAATCGAATT
ATTTTGTGAGGATACTCCAAAAACATGTGAAGTATGTAATCTCAAATTTT
ATGGAATTTTTAACTGATCCATTTTATTTTATCTTGAAAAGTTTGAAATC
AGTTTATTAATTGTATCAAAGTTATTCGCTTTTAAGTCTGCACTAATTCT
TGTTTTACTTGCCATTCTCCAACCGGTGCAAATCTAACCAATAGACCTTA
TCGGAGTTTTAAATTTTTCTAAAAAGGCAATGCATTGTGGGGTTGTTTCG
GGAGTATTACAACAGAAATTTCTTAGGAATTCCTCGAGGGAATTCCATTG
TTATACTCCCGAAACAATCCCACAATGCGTCGCTTTATTAGAAAAATCAA
AAACTCCGATAAGGTCTATTGTATACCGCTGTTGAAAAGATGATGCGATA
TTTTAATTTTCAAAAGAAATTTTTCCCTAGAAATTATAGTGCTCTGAATT
ATCTTTTCAACGGTATACTCAATAATAACAATGAAGCATTCGTTGAAATG
TGGCGAACAAAACAAAGGATTAGTTTGCACTTGAAGCAAATGGATATTTA
AATTGTATTATGTTTGAAAAAAAATCATGAATGAATGAATTTTGGGTGAG
AGTCAAATTACTCTTTTATTTTCAGAACTTTTTGGCGTTATGTGCAAGTG
GATATTATAATGGTTGCTCCTTTCACAGGTAGGCGCTCTTTCATCTCTTG
TGTTTTCAAGGGAGCGTGTAAATCTCAGAATCCCTACTGATCGACATGGA
TGGTAATTTCCCTGGATCTCCTTCCTCTCGGCACTTATTACACAGATCAC
GCGCTTTTTTTATAATAATACTTTATAAGAATGTCCATGATGAAAATGGC
CAAAAAAATTAAGAATAATACTAAGAATATCACCATCATGGAATTTTGCT
ACTCAAGCTAAGAATGTCATTTTTAGAGCATTTTCAATTATAAATTGTCA
ATTATCCCAAAGTAAGGCTCGCTCCTTTCACAAAAATGCCATTTTATGCT
TGAGACGTATGTACTAAATGTTGAATCTAGTCTGAATTAGGATCCTAACT
TAAGAATAAGAATGCTGTAAGAATATTTTAGGATGATTTTCCCAAAAAAG
TTAAGAATATCCATGATGAAATGGATGAATATCCATGATGAAATGGATAT
ACACCATTCTTATATAAAAAAAGCGTGTAATTAAAAATTAAGTACGCGTC
TAGGTTTCTGATCATTATCCAACATAGAGATCTAATTTGACAGTCAACAT
TCGTTTTTTGATTAATGTTGTCAAGAAAAGGTCCTGCGGAGAAGTGTGTC
TCTTGAGTGTGTAATTGAATCAAACAAAGTGAAACATGAGACTGTATTTT
GTTTGAAGTCTTTCGGTGGTATTTGCATGCTCTTTGAATTAAGAAGCTAC
AACGAAACTGAAACGAGACAAGGCCTTTGGAAGAGTTTTTCTTTCTCTTA
ATACATTGAGTCTTACAAACTCAAAACCATTTGAAAATGAGCAACGAAGA
CTCGGATCGGAGAATCGAAGGTTCAGGAGCTCATACAACTTCTGAACAGA
CAGATTTGCTGAAGAGAATTCAACAGTTAGAAAGAAAACATAAAGAGTTG
GAAAAAAGGCTAGAACATCTACCTTGGTTGGAGAGATTTCTCAATTATTT
GAATTGGTTCAAATTTTGGCAGCCTCGTAATGGAATGATCAGCATGGAAA
TGAGGCTGAAAGAAGGCGTTCAAAGGTTCATCGAGTTTCAACATTACGAC
AACAAGAAACGAATCTATGACAATTATGCGGAATATTATGAAGATATTTC
AAGTCGGATGATGTCGAATAAATATTACTATTCCGGGATCTATTGGTTCA
AAAAAGAGGCATTTAATACAAAACAGAAAAACGCTGAAATTGAAAGTGAG
TGGCTTGAAAAAAGACAAATGAATGGAGTGTTTCTTGGGAAATTATTTTG
GAAGATAATAAACTTGATTGAGGATCACAAGATATATGTACTGTTGCACC
CGACGGACAGAAGAAAATACCTTGAATTAAAGCGAGTTGAAAACATCCAT
AATCAACAAGGAGATGAGAAACACTTGTGGAAGCTCGATTGTGTGAACGA
GGAATATTGCATTGAAAGTGGACACGATGTCCAACAGAAATATACGAGAA
TAATGTACTGCACGTGGAAGTTTCGATGGTTTAGTCAGCAAGGTGTATCG
TTGATTTTGTTGGCGTTTATCTTCCTCTTCCTCTTCGTCGTTTACATTTA
CGGTCATTAATTATTTCTTAAACTTCAGTTAGCAAAAGAAAATTTGTCCT
TTAAATTTCTATTATTTAGATAATTTTAAGACGAATTGTTTCCTTTGTTT
CCTACATAACAGTCTTAATTTTAAAAATACAAATTCATGACACTAAGTCA
ATTTTTTTCAATTTTGTCGTCCAGGATCCTGACCAGTGGAGTATTTTTAT
TATTTGCACATTCCGAATGAACCCATTCGCCAATTTTGGGGGAATTTGTT
TTGGCGATTTAATAAAATTTTTAAATTTAGCGAGAATTAATTTTGGCGAA
CGATCCATTTTTTATTTTTAGTATTTAAGCTTAAAAAGGATGGAAAAAGG
GGTTTTTAGGATAAATAGAGACTATGTGAAAGAAATTTAATTTTGGCGGG
AAGAAATTTTGGCGAATTTTTGAGGCAGTTCGCCAAATTTGCCGAAATTT
CTTTCCGCCGTAATAATGATGATAATTCAATCAAAAACGAAAGAACTTGA
TCAATTGTCGCTGTTTACACTACTAAAAAGTGACTGTCTTTTAGTTTAGT
ACGTCATACAGGCAAAAGACCTATGCGGACAAGAGCATTTGATACCAATA
AGAAGGAAACTTGATACCATACTTCGATTTTCCAGTGATTTAAATTCTTA
AGAGAAGTCGAGAGAGCCAAAATTCGAAAACGAAACAAGACTCTACTAGA
CACAACTTCGTTTTTGGAGTATATGTAAATCCAATTCTGCATTGACAATT
CTTAAACGATCCAGAAAAATGAGCAACAACAATTTTGATCGAAGAATTGA
GGGGCGTGTTGCACTCAAAGAAGCAAATACAACTGAACACTTACGCAAAG
ATGTTGATGGTTTACAAAAAAAGATTATTTTGCTGGGGAGAAAACATAAA
GAGTTGGAAAAAAGGCTAGAACAGCTACCTTGGTTGGAGAGATTTCTCAA
TTATTTAAATGGGTTCAAATTTTGGCAGCCTCGTAATGGAATGGTCACCA
TGGAAATGAGGCTGAAAGAAGGCGTTCAAAGGTTCATCGAGTTTCAACAT
TACGACAACAAGAAACGAATCTACGACAATTATGCGGAATATTACAAAGA
TATTTCAAGTCGGATGTTACTCAATAAGGAATACCAATCAGGATTCTACT
GGTTTTTTAAGGAGGAATTCGATACAACAAAACAAAATGCTGAAATTACC
ACTGAGTACGAGAAATGTGACATGAATGAGTCATTTTTCGGGAAAATCCA
CTGGAAGCTGATCAACCTTTTCGAAGATCACGTGTCTTGTATTGTACTGC
ATTCTTCTGATGAAACAAAGTTTCTGGAATATGCGCGTGTTAAGAACAGA
AACTTCGGACGTCGCGAAGAACATATTTGGAAAATTGATGGGTTGACAAA
AGATTTTTATCTGGAACATCAGAACACTGACGAAAAGAAGTACACTAGAA
TAAGTTATAGTAAATGGAAGTTTCGATTGTTTAGTCAGCAAGGTGTATCG
TTGATTTTGTTGGCGTTTATCTTCCTCTTCGTCGTTTACTTTTTGAGAAG
AATGTGGGGCTTTTTCTTTTGGTGAAAATAATCCGTTTGGCGTCCACTCA
GATAGTGGTTATGATTGCTAACTCACACGAGTTTTCTTGTTTCAATTGGA
AATAAAAATTTATATGACGCAACTTTTTTTTGAATAAATTTGTAACATGA
AGAAATTATCTTCTTATTTTCTGGAAATAAATTTATATGATAAAGACAAA
GAAAAAAATGAAGGCCCTTGAATCAAAAGTTTCGAAGGGGAAGAAGTAAT
TCTTTGGGATTCGAAATGAAGAAACTTTTACTCCATTCCAAATGTGCTTA
GAAAACTATTCATACATAAGAAGTAGTCTCACGTTGTGTAGTTTTCACGG
TGCTAAAAAGGGTGGTACAAACTAGCACGGGGTCCACTTGAAGCTTTTTG
ATAGATACAGTCCGCCAGATTTTCGTTGTTTTTGCTAGATAAAAAAAATA
ATGAAGCAATGTTTTTATTTGAAAATAGGGGATTCAAAACCTGTTATTGA
TGTTTATTTCTCATTCTTAATTATATTTTTCAACTTCAAGTAGCTTTTTT
GTTATTTGGATTTTAAACATTTTTTTAAAAATGGCAACCTCGTCAAATGC
TTCTATAGTCTACTTCACTGGACTCAGCGTCATCAAAAATTATCTAAAAG
CAAGTTCAGCCAGAAGTTGGCTCTAGTCTAGGTACAAATCTGCTTTTCAT
CCACGAATCCACCTCAAAAACTGTCAACACTGGCAAAATTGTTGTTTGAT
ACCTTAACAAGTATTAAGATTTTCCATTCATTTTTTGTTTTCAGAAACAT
TAAAGGCTTCATGGTCCAGACAGGTGATCCTTCAGGTTTGTTGTTGTTGC
TAATCACCACTTGTAATACGTAGTAATGTTGTTAAGAGAGTAACTAAATC
CAAAGCTGCAAGGTTCGAGAACATTTTTGAAGAGCCTTTGAATTTTTAGG
ATAGATTTAAAGTACTCAATTTATTAAAATGTTACTGCCTGCCAACCAAC
ATTTTCGAAATTTGAATTTTATAACCATTCTCGCCCTACAATTAAAAAAG
TTACGAGGTTTGCATGCTCATAATCTCATACATCGTGTATTTTTGATGAG
CTCTTTTGTCCATTGGTGAAATCTTATTGCCTCGTTTAGGTGTTAGAAAT
TGAATCAAATGAGATTCATTGTTACTGACATAGGTGTAGGAAAATATTTG
GACTAAAAAAGGCCTGTAAACTCATGTAAACCTTTCAATCTTTCATCAAA
CACAAAATGATCAATGCTTTCTTCAAAGTGGACTCTATTGCTTGATACTT
TCCTCCAAAGTTTACCAGCAAATTTTTGTCTAACAGTTGAGTCTGAAATC
GCATGTGTTTATAAAGAACTTTCCATTTTCTGACTAAGTTTTATTTAATT
TCGCCTAATTTCGTATATTAGAAGGCTAGAAATATCTACAATTCCGATAG
TTAGAATGTTCAGAGTAAACTTGAGTTCTAATAAAAAGTTTTATTTCGAC
GGACGAGCCTCCGAATTTCTTTTGATACATTTAATTAAAAAAATCCAAAG
ACTTCAACGACCAATTACCGACAAATTCTACTCCTGTTTTTCCTCATACC
TCCATGTTTTCAGGATCAGGCAAAGGTGGAAAGAGCATTTGGGGAGGAAA
ATTTGAAGATGAAATTGTGCCTCATTTAAAGGTAAACATTATTTGGTTTA
CATATACACCGTTTTTTATATCAATTTCATTTTGTTGCTTACAGCACCTA
ACCCCGAGAATGTAGGTGAAATTTGAATCAAACCTGAAAGATGTAGATTT
GCATTTAAAAAAACATTTAATGTTTTCAACGAAACTTTGAACACTGAATT
ATTTTAAAATTTCTACTAAAGTCCCAATGGAAATAGAAATTCTATTGTTC
AAAAGCTAAGCAAATTTTCTGATTGTGCTTGGGTGCCAGCGGGTCTGTGA
CTCGTCGTAAAAGCTCAAAATGTCAACATCAATCATCTCTCGTTACATTT
ACATAATTTGACAAACTTTTTTATGTCGGGTTATGAAGACCCTAAAATTG
AAGGTCAGCTAAGGGGCCGTCCACATAGTACGTACGCACTAAGGGGGGAG
TCTTCTCAAAAGCGTATGCTTGCGTACGGGGGGAGGGGAGGGGTCAAAGG
GAAATGTACGTACGCAGAGAAAATTTTTTCATTTGCTTGTTTTTTACGCT
TCTTATACGCATCAAGGAAAAGAAAAAGTTTCTTAATAAACATTGAGTTT
CATGTATGAGATAAAGGTCCGAACCAAACGATTTGAATTCGAAATTTTCT
TCAACCGAGGGGGGTGTGGATGAAAGTACGTACTTACCAGGGGGTATAAC
CATTTGCGTACGCTTGCGTACAGGGGGGAGGGGGTATCCGATTTTCGACA
TTTTAGTGCGTACGTACTATGTGGACGGCCCCTAACCCCAAAAAGTAGGT
CGAACATTTTCGTCAAAATATCTAACTTAGAACAATAAATTTTGAAATGG
ACTATTTTTTGCCCATTTCCTTTGTTCATTAATAGTAAGAAAATGCCCTA
TCATCACAACTTAGTTCCAATAGATTGCGATTCAGAGAGGATTTATTTTA
GAAATGTCTCATATCTAAAAATTAATTTAAGCTCAAATTGATGAGTAATA
TGTAACAGTATTCTCTGAAACAACTTTCTATGAAGTTGAACTATCGTTAG
GGCTACAATGTTAAAAGATGAGAAACCTACATTCTCGAGGTTTACTACAT
TCTCGGGGCCAGGTGCTGTATGTTTCTTTTCTTCTCAACCTAAAATATTT
TTTGTTAGTATGTAGAAAGGAGGCGCCCCTCTATGCTCTCCAAAAAGCAG
AGCGCGGCGCTACAAAGGGAGAAGACTTATTTCTTTCTTTTGTTTAAAAA
TATTGTGCAAGCAAATAGTAGGATGTCCTTCAAGTGCATAGATCAGCAGG
ATACTTTAACTTGGTTTAATATCGACATCACTCTTCTAATCCAGACACCC
TTCTTTAGAGATAGGAATAGTAGAAAGGTCGAAATCGCTTATGTAAACTA
TATTTCTTTGCTTAGCGACCAGAGAGGAAAATAATATTTTGTCTTATCAG
TGATTCTGCCCTTACTATTATTCCTATCTCTAAAACTAGGTGTCAGGGTA
CTAAAAAAGCTTTTATTGCAAAAAGAACGTCCAGCTAACGTTGATTGAAC
GTTATTTGTCAGCTGTTGTAATTCAAATAATCCTTTGATTCTAGCACAAC
GCACGTGGCATCCTTTCGATGGCAAACAGTGGTCCAAACACCAATGCAAG
TCAGTTTTTTTTTACGTATGCCAAGCAACCGCACCTTGATATGAAGTATA
CTATCTTTGGCAAGTAAGAACCAACTATATCCTTAGTCCTAAAGAAAACT
TTTTCCATATTGAAATATTTTAAAAGTATTATCGTCACTCGTATTAACCA
CACCTCTTCTCACAGACCCGCTAGGATTTTTTTAGCCAGTGGGAGTAAAA
ACAACGGACCAAAAATCGATGGGGATTGATATTCCTATTTTTTTATGGCT
CGGGATTTGAAATCCATTGTTTTCGAGCCAGAAATTTCAGTGGGGGTAGA
AAAAATAGCACAATATTTTGTACTCAGGATTTGCTTATCTAATTATTTTT
AGCGGGGACAAAAATTAGAGAATAATTTTCCACTGAGCGATATTTTGGCC
AATATTTTCAGTGGAAAGGGGTCCCAGTGGGTCTGCGAGAAGGGGGTATC
GTCAACGAGAAATTCAATCCTTACCACAGAGCTATTTAAATCAAAACTCA
ATGAATCAGAAAGTAAAATCTTTCAAAAACCAATGTAAGATCAAAATGAG
AAAAAGGAATTCCTTTCGTTGTAGAGTAGTTGAAAGTGAAATGAATGGTC
TTACAGGTCTTACAGCTTTCTTGGAACCTAAAATCTAGGCTACCCTTCCT
GATGACATTAAAGAACTTAAAAACTACTGGGACTTAGTTCTCTATGTATT
CTTTTCAAGGGTTAAAAAGTTAATCGAGTGAAAAATTTAATGATGTATAT
CCAAGATGTCGAAGAAGTTAATTCAGATCTTATTTCCTTTCTTTCCAGAG
TGATCGATGGTTTTGACGTTTTGGACGATTTGGAGAAATTGCCGGTAAAC
GAAAAGAACTTTCGTCCTCATGATAAAGTTTACATCAATAATGTCAACAT
TCATGCAAATCCACTGGCTGATTGATTGTACTCAACGCTGGTTTGGGTTT
ATAAAAGGATATTTTTAACTGTAAAATCATTTAGGCCCTTTTTATTTATA
CAGAAACAACAGAAACCCTGTCATTTAAATTCCTTTTTTCTGATCCTTCT
AATGCCAAAAATACCAATTATATATATTTTAAGAGTACATAATTGCTGAC
AACCAAGGAACGATGTCAGTCTGCACTGTAAAGTCTATTTTTTT

Coding sequence (CDS) from alignment at sc0000269:315178..323871-

>TCONS_00017546 ID=TCONS_00017546|Name=TCONS_00017546|organism=Clytia hemisphaerica|type=CDS|length=3402bp|location=Sequence derived from alignment at sc0000269:315178..323871- (Clytia hemisphaerica)
AGTGATCGATGGTTTTGACGTTTTGGACGATTTGGAGAAATTGCCGGTAA
ACGAAAAGAACTTTCGTCCTCATGATAAAGTTTACATCAATAATGTCAAC
ATTCATGCAAATCCACTGGCTGATTGACACAACGCACGTGGCATCCTTTC
GATGGCAAACAGTGGTCCAAACACCAATGCAAGTCAGTTTTTTTTTACGT
ATGCCAAGCAACCGCACCTTGATATGAAGTATACTATCTTTGGCAAGATC
AGGCAAAGGTGGAAAGAGCATTTGGGGAGGAAAATTTGAAGATGAAATTG
TGCCTCATTTAAAGAAACATTAAAGGCTTCATGGTCCAGACAGGTGATCC
TTCAGAACTTTTTGGCGTTATGTGCAAGTGGATATTATAATGGTTGCTCC
TTTCACAGGCGGTGACCATCACAACGGACTATGGGGATATGAAAATCGAA
TTATTTTGTGAGGATACTCCAAAAACATGTGAAATGAGTGATCGATGGTT
TTGACGTTTTGGACGATTTGGAGAAATTGCCGGTAAACGAAAAGAACTTT
CGTCCTCATGATAAAGTTTACATCAATAATGTCAACATTCATGCAAATCC
ACTGGCTGATTGACACAACGCACGTGGCATCCTTTCGATGGCAAACAGTG
GTCCAAACACCAATGCAAGTCAGTTTTTTTTTACGTATGCCAAGCAACCG
CACCTTGATATGAAGTATACTATCTTTGGCAAGATCAGGCAAAGGTGGAA
AGAGCATTTGGGGAGGAAAATTTGAAGATGAAATTGTGCCTCATTTAAAG
AAACATTAAAGGCTTCATGGTCCAGACAGGTGATCCTTCAGAACTTTTTG
GCGTTATGTGCAAGTGGATATTATAATGGTTGCTCCTTTCACAGGCGGTG
ACCATCACAACGGACTATGGGGATATGAAAATCGAATTATTTTGTGAGGA
TACTCCAAAAACATGTGAAATGAGTGATCGATGGTTTTGACGTTTTGGAC
GATTTGGAGAAATTGCCGGTAAACGAAAAGAACTTTCGTCCTCATGATAA
AGTTTACATCAATAATGTCAACATTCATGCAAATCCACTGGCTGATTGAC
ACAACGCACGTGGCATCCTTTCGATGGCAAACAGTGGTCCAAACACCAAT
GCAAGTCAGTTTTTTTTTACGTATGCCAAGCAACCGCACCTTGATATGAA
GTATACTATCTTTGGCAAGATCAGGCAAAGGTGGAAAGAGCATTTGGGGA
GGAAAATTTGAAGATGAAATTGTGCCTCATTTAAAGAAACATTAAAGGCT
TCATGGTCCAGACAGGTGATCCTTCAGAACTTTTTGGCGTTATGTGCAAG
TGGATATTATAATGGTTGCTCCTTTCACAGGCGGTGACCATCACAACGGA
CTATGGGGATATGAAAATCGAATTATTTTGTGAGGATACTCCAAAAACAT
GTGAAATGAGTGATCGATGGTTTTGACGTTTTGGACGATTTGGAGAAATT
GCCGGTAAACGAAAAGAACTTTCGTCCTCATGATAAAGTTTACATCAATA
ATGTCAACATTCATGCAAATCCACTGGCTGATTGACACAACGCACGTGGC
ATCCTTTCGATGGCAAACAGTGGTCCAAACACCAATGCAAGTCAGTTTTT
TTTTACGTATGCCAAGCAACCGCACCTTGATATGAAGTATACTATCTTTG
GCAAGATCAGGCAAAGGTGGAAAGAGCATTTGGGGAGGAAAATTTGAAGA
TGAAATTGTGCCTCATTTAAAGAAACATTAAAGGCTTCATGGTCCAGACA
GGTGATCCTTCAGAACTTTTTGGCGTTATGTGCAAGTGGATATTATAATG
GTTGCTCCTTTCACAGGCGGTGACCATCACAACGGACTATGGGGATATGA
AAATCGAATTATTTTGTGAGGATACTCCAAAAACATGTGAAATGAGTGAT
CGATGGTTTTGACGTTTTGGACGATTTGGAGAAATTGCCGGTAAACGAAA
AGAACTTTCGTCCTCATGATAAAGTTTACATCAATAATGTCAACATTCAT
GCAAATCCACTGGCTGATTGACACAACGCACGTGGCATCCTTTCGATGGC
AAACAGTGGTCCAAACACCAATGCAAGTCAGTTTTTTTTTACGTATGCCA
AGCAACCGCACCTTGATATGAAGTATACTATCTTTGGCAAGATCAGGCAA
AGGTGGAAAGAGCATTTGGGGAGGAAAATTTGAAGATGAAATTGTGCCTC
ATTTAAAGAAACATTAAAGGCTTCATGGTCCAGACAGGTGATCCTTCAGA
ACTTTTTGGCGTTATGTGCAAGTGGATATTATAATGGTTGCTCCTTTCAC
AGGCGGTGACCATCACAACGGACTATGGGGATATGAAAATCGAATTATTT
TGTGAGGATACTCCAAAAACATGTGAAATGAGTGATCGATGGTTTTGACG
TTTTGGACGATTTGGAGAAATTGCCGGTAAACGAAAAGAACTTTCGTCCT
CATGATAAAGTTTACATCAATAATGTCAACATTCATGCAAATCCACTGGC
TGATTGACACAACGCACGTGGCATCCTTTCGATGGCAAACAGTGGTCCAA
ACACCAATGCAAGTCAGTTTTTTTTTACGTATGCCAAGCAACCGCACCTT
GATATGAAGTATACTATCTTTGGCAAGATCAGGCAAAGGTGGAAAGAGCA
TTTGGGGAGGAAAATTTGAAGATGAAATTGTGCCTCATTTAAAGAAACAT
TAAAGGCTTCATGGTCCAGACAGGTGATCCTTCAGAACTTTTTGGCGTTA
TGTGCAAGTGGATATTATAATGGTTGCTCCTTTCACAGGCGGTGACCATC
ACAACGGACTATGGGGATATGAAAATCGAATTATTTTGTGAGGATACTCC
AAAAACATGTGAAATGAGTGATCGATGGTTTTGACGTTTTGGACGATTTG
GAGAAATTGCCGGTAAACGAAAAGAACTTTCGTCCTCATGATAAAGTTTA
CATCAATAATGTCAACATTCATGCAAATCCACTGGCTGATTGACACAACG
CACGTGGCATCCTTTCGATGGCAAACAGTGGTCCAAACACCAATGCAAGT
CAGTTTTTTTTTACGTATGCCAAGCAACCGCACCTTGATATGAAGTATAC
TATCTTTGGCAAGATCAGGCAAAGGTGGAAAGAGCATTTGGGGAGGAAAA
TTTGAAGATGAAATTGTGCCTCATTTAAAGAAACATTAAAGGCTTCATGG
TCCAGACAGGTGATCCTTCAGAACTTTTTGGCGTTATGTGCAAGTGGATA
TTATAATGGTTGCTCCTTTCACAGGCGGTGACCATCACAACGGACTATGG
GGATATGAAAATCGAATTATTTTGTGAGGATACTCCAAAAACATGTGAAA
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009806XLOC_009806Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017546-proteinTCONS_00017546-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017546-exon-sc0000269-1575043694:323710..323871TCONS_00017546-exon-sc0000269-1575043694:323710..323871Clytia hemisphaericaexon
TCONS_00017546-exon-sc0000269-1575043694:323391..323465TCONS_00017546-exon-sc0000269-1575043694:323391..323465Clytia hemisphaericaexon
TCONS_00017546-exon-sc0000269-1575043694:322744..322796TCONS_00017546-exon-sc0000269-1575043694:322744..322796Clytia hemisphaericaexon
TCONS_00017546-exon-sc0000269-1575043694:318787..318827TCONS_00017546-exon-sc0000269-1575043694:318787..318827Clytia hemisphaericaexon
TCONS_00017546-exon-sc0000269-1575043694:317941..318008TCONS_00017546-exon-sc0000269-1575043694:317941..318008Clytia hemisphaericaexon
TCONS_00017546-exon-sc0000269-1575043694:316259..316377TCONS_00017546-exon-sc0000269-1575043694:316259..316377Clytia hemisphaericaexon
TCONS_00017546-exon-sc0000269-1575043694:315178..315523TCONS_00017546-exon-sc0000269-1575043694:315178..315523Clytia hemisphaericaexon
TCONS_00017546-exon-sc0000269-1510915933:323710..323871TCONS_00017546-exon-sc0000269-1510915933:323710..323871Clytia hemisphaericaexon
TCONS_00017546-exon-sc0000269-1510915933:323391..323465TCONS_00017546-exon-sc0000269-1510915933:323391..323465Clytia hemisphaericaexon
TCONS_00017546-exon-sc0000269-1510915933:322744..322796TCONS_00017546-exon-sc0000269-1510915933:322744..322796Clytia hemisphaericaexon
TCONS_00017546-exon-sc0000269-1510915933:318787..318827TCONS_00017546-exon-sc0000269-1510915933:318787..318827Clytia hemisphaericaexon
TCONS_00017546-exon-sc0000269-1510915933:317941..318008TCONS_00017546-exon-sc0000269-1510915933:317941..318008Clytia hemisphaericaexon
TCONS_00017546-exon-sc0000269-1510915933:316259..316377TCONS_00017546-exon-sc0000269-1510915933:316259..316377Clytia hemisphaericaexon
TCONS_00017546-exon-sc0000269-1510915933:315178..315523TCONS_00017546-exon-sc0000269-1510915933:315178..315523Clytia hemisphaericaexon
TCONS_00017546-exon-sc0000269-1491911889:323710..323871TCONS_00017546-exon-sc0000269-1491911889:323710..323871Clytia hemisphaericaexon
TCONS_00017546-exon-sc0000269-1491911889:323391..323465TCONS_00017546-exon-sc0000269-1491911889:323391..323465Clytia hemisphaericaexon
TCONS_00017546-exon-sc0000269-1491911889:322744..322796TCONS_00017546-exon-sc0000269-1491911889:322744..322796Clytia hemisphaericaexon
TCONS_00017546-exon-sc0000269-1491911889:318787..318827TCONS_00017546-exon-sc0000269-1491911889:318787..318827Clytia hemisphaericaexon
TCONS_00017546-exon-sc0000269-1491911889:317941..318008TCONS_00017546-exon-sc0000269-1491911889:317941..318008Clytia hemisphaericaexon
TCONS_00017546-exon-sc0000269-1491911889:316259..316377TCONS_00017546-exon-sc0000269-1491911889:316259..316377Clytia hemisphaericaexon
TCONS_00017546-exon-sc0000269-1491911889:315178..315523TCONS_00017546-exon-sc0000269-1491911889:315178..315523Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:315178..323871 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000711662	0.00113972	0.0022481	0.000319883	28.4871	24.3002	48.7761	50.6863	69.6061	55.8582	57.3453	64.4265	42.1183	42.1989	0.000890852	3.93231	0.000349115	0.000184703	0.00241466	0.00119647	0.000779591	3.88737e-05	0.00137707	1.72881e-05	46.7269	45.502	0.0011187	0.001265	0.000943959	0.00303597
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002130Cyclophilin-type_PPIase_dom
IPR029000Cyclophilin-like_dom
IPR024936Cyclophilin-type_PPIase
IPR020892Cyclophilin-type_PPIase_CS
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0000413protein peptidyl-prolyl isomerization
Vocabulary: Molecular Function
TermDefinition
GO:0003755peptidyl-prolyl cis-trans isomerase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
biological_process GO:0000413 protein peptidyl-prolyl isomerization
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
Blast
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BLAST of TCONS_00017546 vs. Swiss-Prot (Human)
Match: PPIL3 (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Homo sapiens GN=PPIL3 PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 6.042e-78
Identity = 119/160 (74.38%), Postives = 138/160 (86.25%), Query Frame = 1 
Query:  160 MAVTITTDYGDMKIELFCEDTPKTCENFLALCASGYYNGCSFHRNIKGFMVQTGDPXXXXXXXXXXXXXXFEDEIVPHLKHNARGILSMANSGPNTNASQFFFTYAKQPHLDMKYTIFGKVIDGFDVLDDLEKLPVNEKNFRPHDKVYINNVNIHANPLA 639
            M+VT+ TD GD+KIE+FCE TPKTCENFLALCAS YYNGC FHRNIKGFMVQTGDP+G+G+GG SIWG KFEDE   +LKHN RG++SMAN+GPNTN SQFF TY KQPHLDMKYT+FGKVIDG + LD+LEKLPVNEK +RP + V+I ++ IHANP A
Sbjct:    1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANPFA 160
The following BLAST results are available for this feature:
BLAST of TCONS_00017546 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PPIL36.042e-7874.38Peptidyl-prolyl cis-trans isomerase-like 3 OS=Homo... [more]
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