TCONS_00017555 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017555
Unique NameTCONS_00017555
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length539

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017555 ID=TCONS_00017555|Name=TCONS_00017555|organism=Clytia hemisphaerica|type=transcript|length=539bp
agatttcacttttattggtagaaagaaaaaaaaatttaagagcTGAATTT
GGATACAGTAAAGCTAAAATAGAATGTATGTATGttatagtttatttcaa
gttgacgaacaggcagccacaaaggctaataaaagtcaacctactttaca
atttgtacgGTGATTACAAAAAGCCTACACCGTCAATATAGGTCTGGCAG
ATTCTGCACGGGCATGATGTAGGTCTCCACTGCCTATTCTTTTCCTTTAA
TACAGAATTAATTCCCACATTTTTGGCCCTCaaaatgaaagtgactctgA
ACCGTGAAAAAAACGTTAGAGAGTTTATATTTCTCTTGATCTGAAGTAAG
GCGTTTTGCGATTTACTTTAATATTGATATAAGAAGCTGATACTATTTAC
GTACGGAACTGTATActttattggaactaatttttgtgggAAGTAATATT
CGTGGTCGAAAAAaaagaatcggaaaaattgcatttcgcgggttttaatt
tttggggttttgcccctttttggacaaatttatttttcg
Run BLAST on NCBI

transcript from alignment at sc0000269:56835..57373

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017555 ID=TCONS_00017555|Name=TCONS_00017555|organism=Clytia hemisphaerica|type=transcript|length=539bp|location=Sequence derived from alignment at sc0000269:56835..57373 (Clytia hemisphaerica)
cgaaaaataaatttgtccaaaaaggggcaaaaccccaaaaattaaaaccc
gcgaaatgcaatttttccgattctttTTTTTCGACCACGAATATTACTTc
ccacaaaaattagttccaataaagTATACAGTTCCGTACGTAAATAGTAT
CAGCTTCTTATATCAATATTAAAGTAAATCGCAAAACGCCTTACTTCAGA
TCAAGAGAAATATAAACTCTCTAACGTTTTTTTCACGGTTcagagtcact
ttcattttGAGGGCCAAAAATGTGGGAATTAATTCTGTATTAAAGGAAAA
GAATAGGCAGTGGAGACCTACATCATGCCCGTGCAGAATCTGCCAGACCT
ATATTGACGGTGTAGGCTTTTTGTAATCACcgtacaaattgtaaagtagg
ttgacttttattagcctttgtggctgcctgttcgtcaacttgaaataaac
tataaCATACATACATTCTATTTTAGCTTTACTGTATCCAAATTCAgctc
ttaaatttttttttctttctaccaataaaagtgaaatct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009812XLOC_009812Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017555-exon-sc0000269-1491911889:56835..57373TCONS_00017555-exon-sc0000269-1491911889:56835..57373Clytia hemisphaericaexon
TCONS_00017555-exon-sc0000269-1510915933:56835..57373TCONS_00017555-exon-sc0000269-1510915933:56835..57373Clytia hemisphaericaexon
TCONS_00017555-exon-sc0000269-1575043694:56835..57373TCONS_00017555-exon-sc0000269-1575043694:56835..57373Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:56835..57373 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.104838	0	0	1.59479	0.343698	0.967532	1.29399	0.0905952	0.33665	0.217841	0.0715999	0	0.371269	0.244187	0.131025	0	0.165442	0.114284	0.239179	0	0.152102	0.246534	0	0.115427	0.103016	0.737076	0.629302	0.715955	0.364722
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017555 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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