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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017559 ID=TCONS_00017559|Name=TCONS_00017559|organism=Clytia hemisphaerica|type=transcript|length=1178bp
CCGAGTGAACCCCAACCGGTCCTCAGGTTTCCATCGTTTACACTCCATTT
TCTGAcaatgacaatttttcaatttcaaatatttcactTTCTGCTTTTTA
CCATTCTCACAAGTTAGCCACGTTTCAGCCTCACGCATAGAGTTCGGGTA
ACAACGTGAGCATGACGTTGATTGGCCAGTCACGCGTGATTCGCACGCTC
CGCCACACATCTTCATCTTTATAGTTTTAGGTATACATCCTTCTATTCGT
ATAGTATATTCATACTTCATCGTCCGACATTTTCCCTTCTGCGTTGTGCG
CTTAACAGTCTCATAAATCTTTGGTTCTCCCAAATGAAAACTTAAAATAG
TAATCAGTAGGAATACTATCAAAGTATTTTCATGGTACTCCATCACGATT
GCCAACCTTTTTAAAATGTTCGTGATCAATTCTTTTACTTCGTTTTTAAA
CAACTCTCATCTAGATTTATATAATACACTAATTGTCCAATCAAGTTCGT
TCAAGGAGGTCACGTGAGTGTGTTTTATAAAAATCTTTGAATTCtataaa
aataactttcaagTATCAATTTTGCGATAGTTCGGCTCACTTCACTTGCA
TCAGAAGAGTAATGAACACTCAATAATTGGAAACCTGCTACGTCCAAAAC
TGATTCAAATGTAATCCAAATGATCCAAACGTAATCTTATCTTTTTGACA
ACCGTTTATGTATTGAGATGCAAGTTTGATACAGTGTCTCTCGGCTCCAA
TTGACAGATAAACCAATCAATGCCTCGTTCTGATAAACGGTAATCGATTT
GGGTACTTTATGCTTGATGGGATCTTTATGAGCTTTAAACacaaacaatt
ctcaataaccaTCCAGCTCCAACGAGTCAAATGATCCAAATATCCCTTGC
TTGCTCTTTGAAATCTTCGAATCGACAGTCTGCACTCATATAATTTGGGT
ACGAAAACTGTTATACAAGCTAACCATCCAACTAATCTAACCAATATGTG
TTACAGTCGTAATactgactgcattgatataaacCGCGACCTTACTCCAC
TGCGGTAGAAAGACATCTAATCAAACAGCAGCCAGCCATTATTAATCACT
TATGGACACAATGACAAAATATCAGAGACGCGACGttttaaagagaaaaa
caatcaaTTAAAAGCAACACTGTTAATT Run BLAST on NCBI protein sequence of TCONS_00017559-protein >TCONS_00017559-protein ID=TCONS_00017559-protein|Name=TCONS_00017559-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MEYHENTLIVFLLITILSFHLGEPKIYETVKRTTQKGKCRTMKYEYTIRI
EGCIPKTIKMKMCGGACESRVTGQSTSCSRCYPNSMREAETWLTCENGKK
QKVKYLKLKNCHCQKMECKRWKPEDRLGFTR Run BLAST on NCBI transcript from alignment at sc0000269:105955..107132 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017559 ID=TCONS_00017559|Name=TCONS_00017559|organism=Clytia hemisphaerica|type=transcript|length=1178bp|location=Sequence derived from alignment at sc0000269:105955..107132 (Clytia hemisphaerica)
AATTAACAGTGTTGCTTTTAAttgattgtttttctctttaaaaCGTCGCG
TCTCTGATATTTTGTCATTGTGTCCATAAGTGATTAATAATGGCTGGCTG
CTGTTTGATTAGATGTCTTTCTACCGCAGTGGAGTAAGGTCGCGgtttat
atcaatgcagtcagtATTACGACTGTAACACATATTGGTTAGATTAGTTG
GATGGTTAGCTTGTATAACAGTTTTCGTACCCAAATTATATGAGTGCAGA
CTGTCGATTCGAAGATTTCAAAGAGCAAGCAAGGGATATTTGGATCATTT
GACTCGTTGGAGCTGGAtggttattgagaattgtttgtGTTTAAAGCTCA
TAAAGATCCCATCAAGCATAAAGTACCCAAATCGATTACCGTTTATCAGA
ACGAGGCATTGATTGGTTTATCTGTCAATTGGAGCCGAGAGACACTGTAT
CAAACTTGCATCTCAATACATAAACGGTTGTCAAAAAGATAAGATTACGT
TTGGATCATTTGGATTACATTTGAATCAGTTTTGGACGTAGCAGGTTTCC
AATTATTGAGTGTTCATTACTCTTCTGATGCAAGTGAAGTGAGCCGAACT
ATCGCAAAATTGATActtgaaagttatttttataGAATTCAAAGATTTTT
ATAAAACACACTCACGTGACCTCCTTGAACGAACTTGATTGGACAATTAG
TGTATTATATAAATCTAGATGAGAGTTGTTTAAAAACGAAGTAAAAGAAT
TGATCACGAACATTTTAAAAAGGTTGGCAATCGTGATGGAGTACCATGAA
AATACTTTGATAGTATTCCTACTGATTACTATTTTAAGTTTTCATTTGGG
AGAACCAAAGATTTATGAGACTGTTAAGCGCACAACGCAGAAGGGAAAAT
GTCGGACGATGAAGTATGAATATACTATACGAATAGAAGGATGTATACCT
AAAACTATAAAGATGAAGATGTGTGGCGGAGCGTGCGAATCACGCGTGAC
TGGCCAATCAACGTCATGCTCACGTTGTTACCCGAACTCTATGCGTGAGG
CTGAAACGTGGCTAACTTGTGAGAATGGTAAAAAGCAGAAagtgaaatat
ttgaaattgaaaaattgtcattgTCAGAAAATGGAGTGTAAACGATGGAA
ACCTGAGGACCGGTTGGGGTTCACTCGG Coding sequence (CDS) from alignment at sc0000269:105955..107132 >TCONS_00017559 ID=TCONS_00017559|Name=TCONS_00017559|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at sc0000269:105955..107132 (Clytia hemisphaerica)
ATGGAGTACCATGAAAATACTTTGATAGTATTCCTACTGATTACTATTTT
AAGTTTTCATTTGGGAGAACCAAAGATTTATGAGACTGTTAAGCGCACAA
CGCAGAAGGGAAAATGTCGGACGATGAAGTATGAATATACTATACGAATA
GAAGGATGTATACCTAAAACTATAAAGATGAAGATGTGTGGCGGAGCGTG
CGAATCACGCGTGACTGGCCAATCAACGTCATGCTCACGTTGTTACCCGA
ACTCTATGCGTGAGGCTGAAACGTGGCTAACTTGTGAGAATGGTAAAAAG
CAGAAagtgaaatatttgaaattgaaaaattgtcattgTCAGAAAATGGA
GTGTAAACGATGGAAACCTGAGGACCGGTTGGGGTTCACTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017559-exon-sc0000269-1491911889:105955..107132 | TCONS_00017559-exon-sc0000269-1491911889:105955..107132 | Clytia hemisphaerica | exon |
| TCONS_00017559-exon-sc0000269-1510915933:105955..107132 | TCONS_00017559-exon-sc0000269-1510915933:105955..107132 | Clytia hemisphaerica | exon |
| TCONS_00017559-exon-sc0000269-1575043694:105955..107132 | TCONS_00017559-exon-sc0000269-1575043694:105955..107132 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000269 | supercontig | sc0000269:105955..107132 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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