TCONS_00017563 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017563
Unique NameTCONS_00017563
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length512

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017563 ID=TCONS_00017563|Name=TCONS_00017563|organism=Clytia hemisphaerica|type=transcript|length=512bp
TAGTGTGGTCTCGTGAGGTCTCATGTGACATAGTTTCTGTTTCTTTGTCG
GTCGCTTTGTCACAATTTGGAAAATTCTGTGATATGATCCGGATGGTGCT
GGGATAACTAAAGATAAGAAGATCATTTGGGGCGTTTTGACGTTACCACC
CTCAAAGTAGGGTAGGGCTCCGTTCACCATTTTAGATGACTTTATATAGA
TCCAAAAGGGTGCCTTCATCTTgcaagataatttgttttggtctccaggT
TTGGGAactagcaatgtttttggttgttttcgatggaaaatgttaagtgt
taaTAAAATATTACTTACATTTACAAttatcatttagtttttgctgtctg
atagaatggcaggatcctggacgGTTCCCTAATTGTCTTTACCTAGTATA
TTTGCAAAACAGTGGTGACAAACCATGGTTTTGACCGTTTAGACCATgtt
caaatttgtcaaattgaatCAAATAAACTTTAAAATACTCCGCTCTACTT
TAGAATACTGAA
Run BLAST on NCBI

protein sequence of TCONS_00017563-protein

>TCONS_00017563-protein ID=TCONS_00017563-protein|Name=TCONS_00017563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MIIVNVSNILLTLNIFHRKQPKTLLVPKPGDQNKLSCKMKAPFWIYIKSS
KMVNGALPYFEGGNVKTPQMIFLSLVIPAPSGSYHRIFQIVTKRPTKKQK
LCHMRPHETTL
Run BLAST on NCBI

transcript from alignment at sc0000269:121193..121704

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017563 ID=TCONS_00017563|Name=TCONS_00017563|organism=Clytia hemisphaerica|type=transcript|length=512bp|location=Sequence derived from alignment at sc0000269:121193..121704 (Clytia hemisphaerica)
TTCAGTATTCTAAAGTAGAGCGGAGTATTTTAAAGTTTATTTGattcaat
ttgacaaatttgaacATGGTCTAAACGGTCAAAACCATGGTTTGTCACCA
CTGTTTTGCAAATATACTAGGTAAAGACAATTAGGGAACcgtccaggatc
ctgccattctatcagacagcaaaaactaaatgataaTTGTAAATGTAAGT
AATATTTTAttaacacttaacattttccatcgaaaacaaccaaaaacatt
gctagtTCCCAAAcctggagaccaaaacaaattatcttgcAAGATGAAGG
CACCCTTTTGGATCTATATAAAGTCATCTAAAATGGTGAACGGAGCCCTA
CCCTACTTTGAGGGTGGTAACGTCAAAACGCCCCAAATGATCTTCTTATC
TTTAGTTATCCCAGCACCATCCGGATCATATCACAGAATTTTCCAAATTG
TGACAAAGCGACCGACAAAGAAACAGAAACTATGTCACATGAGACCTCAC
GAGACCACACTA

Coding sequence (CDS) from alignment at sc0000269:121193..121704

>TCONS_00017563 ID=TCONS_00017563|Name=TCONS_00017563|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0000269:121193..121704 (Clytia hemisphaerica)
atgataaTTGTAAATGTAAGTAATATTTTAttaacacttaacattttcca
tcgaaaacaaccaaaaacattgctagtTCCCAAAcctggagaccaaaaca
aattatcttgcAAGATGAAGGCACCCTTTTGGATCTATATAAAGTCATCT
AAAATGGTGAACGGAGCCCTACCCTACTTTGAGGGTGGTAACGTCAAAAC
GCCCCAAATGATCTTCTTATCTTTAGTTATCCCAGCACCATCCGGATCAT
ATCACAGAATTTTCCAAATTGTGACAAAGCGACCGACAAAGAAACAGAAA
CTATGTCACATGAGACCTCACGAGACCACACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009820XLOC_009820Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017563-exon-sc0000269-1491911889:121193..121704TCONS_00017563-exon-sc0000269-1491911889:121193..121704Clytia hemisphaericaexon
TCONS_00017563-exon-sc0000269-1510915933:121193..121704TCONS_00017563-exon-sc0000269-1510915933:121193..121704Clytia hemisphaericaexon
TCONS_00017563-exon-sc0000269-1575043694:121193..121704TCONS_00017563-exon-sc0000269-1575043694:121193..121704Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017563-proteinTCONS_00017563-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:121193..121704 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.70253	0.570897	0.798322	0.648512	1.2632	0.124775	0.602142	0.281859	0.592008	0.611081	0.949009	0.389901	0.934461	0.646964	0.332433	0.570802	0.527386	0.630646	1.49361	0.390739	1.58491	0.82828	0.537004	0.244107	0.628562	0.112195	0.481654	0.342689	1.03967	1.19167
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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